Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 4.0e-102 374.8 191 100.0
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 2.0e-61 239.6 168 76.2
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 2.9e-44 182.6 170 59.4
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 6.7e-33 144.8 160 50.6
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 2.0e-32 143.3 154 50.6
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 3.3e-32 142.5 150 48.7
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.7e-31 140.2 150 48.7
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 2.2e-31 139.8 146 48.6
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.8e-31 139.4 151 49.0
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 3.7e-31 139.0 149 49.7
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 4.8e-31 138.7 149 49.7
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 4.8e-31 138.7 149 49.7
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 4.8e-31 138.7 154 50.0
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 6.3e-31 138.3 154 50.6
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 6.3e-31 138.3 153 49.0
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.4e-30 137.1 153 49.7
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.8e-30 136.7 148 49.3
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.8e-30 136.7 182 42.9
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 2.4e-30 136.3 150 51.3
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 6.9e-30 134.8 159 47.2
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 9.1e-30 134.4 149 47.7
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 9.1e-30 134.4 180 45.0
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 9.1e-30 134.4 157 49.0
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 1.2e-29 134.0 178 45.5
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.2e-29 134.0 150 48.7
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 1.2e-29 134.0 149 45.0
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.2e-29 134.0 174 46.0
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.5e-29 133.7 146 48.6
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-29 133.7 149 48.3
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 2.0e-29 133.3 175 45.7
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 2.6e-29 132.9 145 49.0
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.6e-29 132.9 152 44.7
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 4.5e-29 132.1 154 47.4
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 4.5e-29 132.1 157 46.5
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 4.5e-29 132.1 151 49.7
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 5.9e-29 131.7 179 44.1
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 5.9e-29 131.7 153 44.4
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.9e-29 131.7 176 43.2
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.3e-28 130.6 160 45.6
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 1.7e-28 130.2 150 48.0
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 2.2e-28 129.8 150 46.7
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 2.2e-28 129.8 150 49.3
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 2.9e-28 129.4 184 41.8
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 3.8e-28 129.0 185 42.7
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 3.8e-28 129.0 152 44.7
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.8e-28 129.0 178 43.8
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.8e-28 129.0 146 48.6
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 5.0e-28 128.6 178 40.4
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 8.5e-28 127.9 181 41.4
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.1e-27 127.5 159 44.0
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.4e-27 127.1 154 43.5
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.9e-27 126.7 155 46.5
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 2.5e-27 126.3 146 43.8
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.5e-27 126.3 157 44.6
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.5e-27 126.3 183 41.0
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 3.2e-27 125.9 154 44.8
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 5.5e-27 125.2 183 41.0
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 5.5e-27 125.2 170 44.1
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 7.2e-27 124.8 156 42.9
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 1.6e-26 123.6 117 55.6
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.1e-26 123.2 151 46.4
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 3.6e-26 122.5 140 47.9
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 3.6e-26 122.5 173 42.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.6e-26 122.5 154 44.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 6.1e-26 121.7 120 50.8
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.8e-25 120.2 179 45.3
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 2.3e-25 119.8 155 43.9
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 3.0e-25 119.4 102 55.9
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 8.8e-25 117.9 149 44.3
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 8.8e-25 117.9 151 43.7
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.1e-24 117.5 179 41.3
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 5.7e-24 115.2 150 44.0
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 5.7e-24 115.2 145 44.8
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.7e-24 115.2 154 42.2
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 7.4e-24 114.8 177 40.7
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 7.4e-24 114.8 176 39.8
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 7.4e-24 114.8 154 43.5
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.7e-24 114.4 145 44.8
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.7e-24 114.4 123 48.0
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.3e-23 114.0 180 40.0
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.3e-23 114.0 149 44.3
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 3.7e-23 112.5 145 43.4
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 3.7e-23 112.5 149 44.3
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 4.8e-23 112.1 178 39.3
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 4.8e-23 112.1 149 43.0
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.1e-22 110.9 146 44.5
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-22 110.5 142 43.7
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 1.8e-22 110.2 178 39.3
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 1.8e-22 110.2 151 41.7
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 1.8e-22 110.2 149 45.6
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 1.8e-22 110.2 149 45.6
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.4e-22 109.8 145 40.7
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 2.4e-22 109.8 149 45.6
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 5.3e-22 108.6 180 41.1
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 5.3e-22 108.6 149 45.0
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 5.3e-22 108.6 149 45.0
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 5.3e-22 108.6 157 41.4
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 7.0e-22 108.2 147 44.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.1e-22 107.8 123 46.3
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.6e-21 107.1 150 40.7
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 3.5e-21 105.9 159 39.6
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 5.9e-21 105.1 157 41.4
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 5.9e-21 105.1 161 39.1
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.0e-20 104.4 116 46.6
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.9e-20 102.8 136 41.9
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 6.5e-20 101.7 140 40.7
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 6.5e-20 101.7 116 45.7
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 1.1e-19 100.9 158 38.6
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 3.6e-18 95.9 143 38.5
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 4.0e-17 92.4 146 37.0
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 4.4e-16 89.0 143 36.4
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 7.5e-16 88.2 143 36.4
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 9.7e-16 87.8 143 36.4
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 8.2e-15 84.7 151 39.1
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.1e-14 82.4 97 49.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 7.0e-14 81.6 104 45.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.0e-13 80.1 96 47.9
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 7.7e-13 78.2 160 39.4
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 1.0e-12 77.8 156 37.2
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.2e-12 76.6 144 36.8
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.2e-10 70.9 161 33.5
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 2.1e-10 70.1 156 37.2
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.8e-09 67.0 145 37.2
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 1.4e-06 57.4 55 45.5
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 5.4e-06 55.5 135 29.6


User provided reference genes

Program Settings