Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 7.2e-139 497.3 258 100.0
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.8e-119 432.2 261 83.5
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 4.1e-94 348.6 192 90.1
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.5e-47 191.8 213 43.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 8.4e-47 191.4 214 41.6
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-46 191.0 214 40.7
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.9e-46 190.3 218 42.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.5e-46 189.9 215 42.8
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.2e-46 189.5 214 40.2
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.3e-46 188.0 219 40.2
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.2e-45 187.6 219 40.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.1e-45 186.8 221 41.6
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.1e-45 186.8 215 39.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.7e-45 186.4 222 40.1
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.5e-45 186.0 211 42.7
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.6e-45 185.7 215 41.9
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.9e-45 184.9 219 39.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.0e-44 184.5 217 38.7
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.8e-44 183.7 217 42.4
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.9e-44 182.6 217 39.2
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 5.1e-44 182.2 216 42.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.1e-43 181.0 222 40.1
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.1e-43 181.0 222 40.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.5e-43 180.6 218 40.8
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.9e-43 180.3 218 40.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.5e-43 179.9 220 40.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.5e-43 179.9 215 40.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.7e-43 178.7 214 39.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 7.4e-43 178.3 219 40.6
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.7e-43 177.9 220 40.5
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 9.7e-43 177.9 215 40.5
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 2.8e-42 176.4 216 38.4
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.8e-42 176.4 214 38.3
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 3.7e-42 176.0 252 36.5
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 3.7e-42 176.0 210 39.0
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 4.8e-42 175.6 221 38.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 8.2e-42 174.9 214 38.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 8.2e-42 174.9 219 38.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 8.2e-42 174.9 218 39.9
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.1e-41 174.5 214 39.7
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-41 174.5 218 38.5
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.4e-41 174.1 214 37.4
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-41 174.1 222 39.6
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.8e-41 173.7 216 38.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 4.1e-41 172.6 199 42.2
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.3e-41 172.2 216 40.3
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.3e-41 172.2 208 40.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 6.9e-41 171.8 216 41.2
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 9.0e-41 171.4 214 39.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 9.0e-41 171.4 214 38.8
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.2e-40 171.0 215 37.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.2e-40 171.0 224 38.4
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.5e-40 170.6 215 38.1
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.0e-40 170.2 215 37.7
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.6e-40 169.9 217 38.2
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.4e-40 169.5 220 39.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.4e-40 169.5 212 38.7
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.4e-40 169.5 215 40.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 4.5e-40 169.1 223 37.2
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.7e-40 168.3 218 38.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 7.7e-40 168.3 212 37.7
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 7.7e-40 168.3 214 38.3
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 7.7e-40 168.3 207 39.1
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.0e-39 167.9 214 37.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-39 167.2 214 38.8
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.2e-39 166.8 212 36.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-39 166.4 257 34.2
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-39 166.4 257 34.2
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.8e-39 166.0 210 40.0
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 6.5e-39 165.2 214 38.3
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 6.5e-39 165.2 214 39.7
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.5e-39 165.2 220 37.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-38 164.5 213 39.9
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.1e-38 164.5 213 38.0
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-38 164.1 210 39.0
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-38 164.1 213 39.9
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-38 164.1 213 39.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.4e-38 164.1 212 36.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.4e-38 164.1 211 38.9
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.2e-38 162.9 213 39.9
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.2e-38 162.9 213 39.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.2e-38 162.9 215 38.1
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 9.4e-38 161.4 213 36.2
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.2e-37 161.0 218 36.2
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.6e-37 160.6 215 35.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.1e-37 160.2 220 36.4
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.7e-37 159.8 214 37.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.6e-37 159.5 211 36.0
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.6e-37 159.1 196 39.3
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.8e-36 157.1 215 36.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.3e-36 156.8 194 38.1
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.0e-36 156.4 212 36.8
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 6.7e-36 155.2 247 35.2
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 8.8e-36 154.8 216 36.6
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.5e-35 154.1 215 36.3
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.5e-35 154.1 204 37.3
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.0e-35 153.7 216 36.6
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.0e-35 153.7 211 36.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.0e-35 153.7 247 35.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.0e-35 153.7 221 36.7
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.5e-35 153.3 214 33.6
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 4.3e-35 152.5 216 38.9
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 5.7e-35 152.1 225 33.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 5.7e-35 152.1 211 38.4
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 9.7e-35 151.4 213 37.6
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 9.7e-35 151.4 215 37.7
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.2e-34 150.2 215 34.4
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 3.7e-34 149.4 213 38.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 3.7e-34 149.4 213 38.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 8.2e-34 148.3 214 34.1
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 8.2e-34 148.3 222 34.7
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 8.2e-34 148.3 218 35.8
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.8e-33 147.1 211 34.6
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.8e-33 147.1 213 38.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.8e-33 147.1 154 43.5
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 2.4e-33 146.7 210 32.9
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.4e-33 146.7 213 38.0
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.4e-33 146.7 213 38.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.1e-33 146.4 218 34.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.2e-32 144.4 212 34.9
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.0e-32 143.7 215 34.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.5e-32 142.5 211 34.1
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.0e-31 141.4 210 33.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.3e-31 141.0 149 44.3
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 5.0e-31 139.0 216 33.8
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 8.5e-31 138.3 156 43.6
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 8.5e-31 138.3 206 34.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.9e-30 137.1 187 35.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.5e-30 136.7 187 35.8
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.6e-29 134.0 202 35.6
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.6e-29 132.9 219 34.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.7e-29 132.5 181 38.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.0e-28 131.3 151 41.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.4e-28 131.0 215 34.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.4e-28 131.0 210 33.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.0e-28 129.8 147 42.9
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.6e-27 126.7 182 37.4
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.6e-27 126.7 181 37.0
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 4.4e-27 125.9 215 32.1
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 5.7e-27 125.6 182 37.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-26 124.4 177 37.3
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.8e-26 122.5 191 33.5
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.4e-25 120.9 188 34.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.4e-25 120.9 144 40.3
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.4e-25 120.9 163 36.2
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.1e-25 119.8 227 29.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.5e-24 116.3 248 30.2
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 4.5e-24 115.9 171 32.7
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.3e-23 114.4 191 31.4
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.8e-23 112.8 186 37.1
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.8e-23 112.8 186 37.1
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.5e-23 112.1 203 31.0
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 6.1e-21 105.5 137 42.3
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.8e-20 104.0 147 35.4
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 2.6e-19 100.1 57 78.9
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.2e-18 97.1 76 53.9
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.2e-18 97.1 84 48.8
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.2e-18 97.1 88 47.7
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 5.3e-17 92.4 152 30.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.7e-15 87.4 73 50.7
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.5e-15 85.5 193 29.5
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.5e-14 83.6 97 38.1
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.5e-14 83.6 106 41.5
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.2e-14 83.2 143 32.2
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 3.0e-12 76.6 154 27.3
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.8e-12 75.1 105 33.3
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.5e-11 72.0 92 39.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-10 71.2 104 35.6
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.2e-10 70.5 73 42.5
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 4.5e-08 62.8 83 39.8
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.9e-08 62.4 201 25.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-07 61.6 147 28.6
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-07 61.2 91 33.0
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-07 61.2 91 33.0
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 5.0e-07 59.3 143 28.0
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.5e-06 57.0 112 28.6


User provided reference genes

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