Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb266130 Zea mays HOM05D000921 ORTHO05D002852 3.4e-67 258.1 120 100.0
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 1.4e-23 113.2 100 58.0
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 1.8e-20 102.8 54 83.3
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 9.1e-20 100.5 57 73.7
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.9e-19 97.8 57 70.2
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 7.7e-19 97.4 57 70.2
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.0e-18 97.1 57 70.2
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.0e-18 97.1 57 70.2
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 1.3e-18 96.7 57 71.9
TAR629G0908 Trochodendron aralioides HOM05D000921 ORTHO05D002852 1.3e-18 96.7 64 65.6
TAR629G2419 Trochodendron aralioides HOM05D000921 ORTHO05D002852 1.3e-18 96.7 64 65.6
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 1.7e-18 96.3 60 65.0
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.7e-18 96.3 57 71.9
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 2.2e-18 95.9 57 66.7
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 2.9e-18 95.5 57 70.2
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 3.8e-18 95.1 57 68.4
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 5.0e-18 94.7 57 66.7
Gohir.D08G042866 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.0e-18 94.7 57 68.4
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.0e-18 94.7 57 68.4
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 6.5e-18 94.4 57 68.4
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 6.5e-18 94.4 60 61.7
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 6.5e-18 94.4 57 63.2
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 66.7
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 68.4
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 68.4
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 68.4
Lalb_Chr07g0189601 Lupinus albus HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 66.7
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 71.9
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 68.4
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 8.5e-18 94.0 57 68.4
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 1.1e-17 93.6 57 64.9
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.1e-17 93.6 57 66.7
Lalb_Chr01g0021281 Lupinus albus HOM05D000921 ORTHO05D002852 1.1e-17 93.6 64 62.5
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 1.5e-17 93.2 57 66.7
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 1.5e-17 93.2 57 64.9
RcHm_v2.0_Chr1g0351141 Rosa chinensis HOM05D000921 ORTHO05D002852 1.5e-17 93.2 57 68.4
Sabra02G0118700 Salix brachista HOM05D000921 ORTHO05D002852 1.5e-17 93.2 57 64.9
ATR0757G054 Amborella trichopoda HOM05D000921 ORTHO05D002852 1.9e-17 92.8 57 68.4
arahy.Tifrunner.gnm1.ann1.UYJG1L Arachis hypogaea HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 68.4
Lj3g0001885 Lotus japonicus HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 64.9
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 66.7
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 66.7
Potri.014G072600 Populus trichocarpa HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 66.7
Sabra14G0051800 Salix brachista HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 66.7
GSVIVG01027547001 Vitis vinifera HOM05D000921 ORTHO05D002852 2.5e-17 92.4 57 66.7
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 3.2e-17 92.0 57 63.2
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 4.2e-17 91.7 57 64.9
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 4.2e-17 91.7 57 64.9
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 5.5e-17 91.3 57 64.9
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 7.2e-17 90.9 59 67.8
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 7.2e-17 90.9 78 52.6
arahy.Tifrunner.gnm1.ann1.4FT79Q Arachis hypogaea HOM05D000921 ORTHO05D002852 9.4e-17 90.5 57 66.7
Cpa.g.sc18.151 Carica papaya HOM05D000921 ORTHO05D002852 1.2e-16 90.1 57 64.9
Sed0009254 Sechium edule HOM05D000921 ORTHO05D002852 1.2e-16 90.1 57 63.2
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 1.2e-16 90.1 72 56.9
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 1.6e-16 89.7 57 64.9
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 1.6e-16 89.7 59 66.1
SEGI_07876 Sequoiadendron giganteum HOM05D000921 ORTHO05D002852 1.6e-16 89.7 54 70.4
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.6e-16 89.7 54 74.1
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 2.1e-16 89.4 57 66.7
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 2.7e-16 89.0 64 60.9
Glyma.18G223300 Glycine max HOM05D000921 ORTHO05D002852 2.7e-16 89.0 100 48.0
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 3.6e-16 88.6 57 63.2
Oeu003495.3 Olea europaea HOM05D000921 ORTHO05D002852 3.6e-16 88.6 100 44.0
Peaxi162Scf00416g00310 Petunia axillaris HOM05D000921 ORTHO05D002852 3.6e-16 88.6 54 68.5
Ciclev10024213m.g Citrus clementina HOM05D000921 ORTHO05D002852 4.7e-16 88.2 54 68.5
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 4.7e-16 88.2 64 57.8
Sed0001143 Sechium edule HOM05D000921 ORTHO05D002852 4.7e-16 88.2 57 63.2
Aa31LG1G27030 Aethionema arabicum HOM05D000921 ORTHO05D002852 6.1e-16 87.8 57 63.2
AL4G44720 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 6.1e-16 87.8 57 64.9
AT2G45540 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 6.1e-16 87.8 57 64.9
Eucgr.E01352 Eucalyptus grandis HOM05D000921 ORTHO05D002852 6.1e-16 87.8 57 63.2
Thhalv10001277m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 6.1e-16 87.8 57 63.2
MD10G1005600 Malus domestica HOM05D000921 ORTHO05D002852 6.1e-16 87.8 54 66.7
CARHR140720 Cardamine hirsuta HOM05D000921 ORTHO05D002852 8.0e-16 87.4 57 63.2
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 8.0e-16 87.4 57 66.7
Psat4g150320 Pisum sativum HOM05D000921 ORTHO05D002852 8.0e-16 87.4 57 59.6
Sp4g27560 Schrenkiella parvula HOM05D000921 ORTHO05D002852 8.0e-16 87.4 57 63.2
AUR62013603 Chenopodium quinoa HOM05D000921 ORTHO05D002852 1.0e-15 87.0 57 61.4
A05p05550 Brassica napus HOM05D000921 ORTHO05D002852 1.4e-15 86.7 57 61.4
BraA05t19525Z Brassica rapa HOM05D000921 ORTHO05D002852 1.4e-15 86.7 57 61.4
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 1.4e-15 86.7 100 45.0
THA.LOC104801996 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 1.4e-15 86.7 54 64.8
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 1.4e-15 86.7 60 58.3
VMungo1383G3171 Vigna mungo HOM05D000921 ORTHO05D002852 1.4e-15 86.7 62 62.9
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 1.8e-15 86.3 54 68.5
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 1.8e-15 86.3 57 61.4
BolC4t22272H Brassica oleracea HOM05D000921 ORTHO05D002852 1.8e-15 86.3 57 61.4
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 1.8e-15 86.3 100 41.0
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 1.8e-15 86.3 54 64.8
Rhsim07G0024100 Rhododendron simsii HOM05D000921 ORTHO05D002852 1.8e-15 86.3 54 66.7
Carub.0004s2816 Capsella rubella HOM05D000921 ORTHO05D002852 2.3e-15 85.9 57 63.2
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 2.3e-15 85.9 100 40.0
MBI12_g38016_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 2.3e-15 85.9 54 66.7
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 2.3e-15 85.9 100 44.0
TPR.G28298 Trifolium pratense HOM05D000921 ORTHO05D002852 2.3e-15 85.9 59 59.3
BcaC02g10197 Brassica carinata HOM05D000921 ORTHO05D002852 3.0e-15 85.5 54 66.7
C04p31670 Brassica napus HOM05D000921 ORTHO05D002852 3.0e-15 85.5 54 66.7
BolC4t24715H Brassica oleracea HOM05D000921 ORTHO05D002852 3.0e-15 85.5 54 66.7
CARHR171310 Cardamine hirsuta HOM05D000921 ORTHO05D002852 3.0e-15 85.5 57 61.4
HPP92_003358 Vanilla planifolia HOM05D000921 ORTHO05D002852 3.0e-15 85.5 100 42.0
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 4.0e-15 85.1 57 61.4
Carub.0005s2767 Capsella rubella HOM05D000921 ORTHO05D002852 4.0e-15 85.1 57 61.4
AT3G60920 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 63.2
Thhalv10005733m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 63.2
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 64.9
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 64.9
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 64.9
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 64.9
Nitab4.5_0002436g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 5.2e-15 84.7 51 72.5
THA.LOC104827617 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 5.2e-15 84.7 57 61.4
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 8.8e-15 84.0 57 61.4
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 8.8e-15 84.0 57 61.4
CAN.G1561.17 Capsicum annuum HOM05D000921 ORTHO05D002852 1.2e-14 83.6 100 43.0
Migut.F01430 Erythranthe guttata HOM05D000921 ORTHO05D002852 1.2e-14 83.6 98 41.8
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.2e-14 83.6 57 63.2
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 1.2e-14 83.6 60 56.7
Sopen01g037870 Solanum pennellii HOM05D000921 ORTHO05D002852 1.2e-14 83.6 102 47.1
Sc02g0002400 Simmondsia chinensis HOM05D000921 ORTHO05D002852 1.5e-14 83.2 64 57.8
EL10Ac1g00924 Beta vulgaris HOM05D000921 ORTHO05D002852 2.0e-14 82.8 100 41.0
HanXRQChr04g0122231 Helianthus annuus HOM05D000921 ORTHO05D002852 2.0e-14 82.8 57 61.4
Lj9A573G74 Lonicera japonica HOM05D000921 ORTHO05D002852 2.6e-14 82.4 57 57.9
BcaC07g40611 Brassica carinata HOM05D000921 ORTHO05D002852 3.4e-14 82.0 57 57.9
A09p53140 Brassica napus HOM05D000921 ORTHO05D002852 3.4e-14 82.0 57 57.9
C08p35860 Brassica napus HOM05D000921 ORTHO05D002852 3.4e-14 82.0 57 57.9
BolC8t51174H Brassica oleracea HOM05D000921 ORTHO05D002852 3.4e-14 82.0 57 57.9
BraA09t40739Z Brassica rapa HOM05D000921 ORTHO05D002852 3.4e-14 82.0 57 57.9
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 3.4e-14 82.0 102 45.1
ECA236G3038 Erigeron canadensis HOM05D000921 ORTHO05D002852 4.4e-14 81.6 64 57.8
Lsat_1_v5_gn_7_7601 Lactuca sativa HOM05D000921 ORTHO05D002852 4.4e-14 81.6 64 54.7
BcaC07g42649 Brassica carinata HOM05D000921 ORTHO05D002852 5.7e-14 81.3 54 61.1
vmacro13368 Vaccinium macrocarpon HOM05D000921 ORTHO05D002852 9.8e-14 80.5 51 66.7
Cc02_g36420 Coffea canephora HOM05D000921 ORTHO05D002852 4.8e-13 78.2 100 39.0
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 4.8e-13 78.2 57 61.4
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 1.2e-11 73.6 57 56.1
Pp3c25_6190 Physcomitrium patens HOM05D000921 ORTHO05D002852 4.5e-11 71.6 55 56.4
Mapoly0056s0137 Marchantia polymorpha HOM05D000921 ORTHO05D002852 5.9e-11 71.2 101 37.6
Lsat_1_v5_gn_8_84441 Lactuca sativa HOM05D000921 ORTHO05D002852 1.3e-10 70.1 51 54.9
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 1.7e-10 69.7 54 53.7
AagrBONN_evm.TU.Sc2ySwM_117.767 Anthoceros agrestis HOM05D000921 ORTHO05D002852 3.8e-10 68.6 55 52.7
Pp3c16_14330 Physcomitrium patens HOM05D000921 ORTHO05D002852 2.5e-09 65.9 99 35.4
AagrBONN_evm.TU.Sc2ySwM_368.3442 Anthoceros agrestis HOM05D000921 ORTHO05D002852 4.2e-09 65.1 55 50.9
AUR62004245 Chenopodium quinoa HOM05D000921 ORTHO05D002852 5.5e-09 64.7 104 35.6
ECA240G3430 Erigeron canadensis HOM05D000921 ORTHO05D002852 5.5e-09 64.7 100 32.0
Aa31LG10G15130 Aethionema arabicum HOM05D000921 ORTHO05D002852 1.6e-08 63.2 42 59.5
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 1.6e-08 63.2 56 46.4
Sp5g02330 Schrenkiella parvula HOM05D000921 ORTHO05D002852 4.7e-08 61.6 42 59.5
VMungo0331G0704 Vigna mungo HOM05D000921 ORTHO05D002852 4.7e-08 61.6 101 34.7
unitig_22.g5373 Utricularia gibba HOM05D000921 ORTHO05D002852 6.1e-08 61.2 42 52.4
CBR_g26196 Chara braunii HOM05D000921 ORTHO05D002852 1.0e-07 60.5 100 33.0
AUR62037342 Chenopodium quinoa HOM05D000921 ORTHO05D002852 5.2e-07 58.2 34 64.7


User provided reference genes

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