Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 1.6e-181 640.2 585 100.0
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 6.2e-154 548.5 587 87.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.4e-105 387.9 582 75.9
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 3.8e-103 379.8 585 73.8
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 6.5e-103 379.0 582 72.5
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 4.2e-102 376.3 587 71.2
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.9e-100 369.8 585 71.5
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 2.0e-99 367.5 581 73.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 4.3e-99 366.3 581 73.8
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 9.7e-99 365.2 588 71.9
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 4.8e-98 362.8 585 72.8
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 6.3e-98 362.5 581 69.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 8.2e-98 362.1 585 73.3
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 3.4e-96 356.7 581 73.0
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.9e-96 355.9 582 68.9
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 5.9e-96 355.9 585 71.6
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.4e-94 351.3 585 71.3
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 5.5e-94 349.4 585 70.9
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.8e-92 344.4 581 72.8
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.8e-92 344.4 585 72.3
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 8.8e-92 342.0 581 72.6
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 4.4e-91 339.7 581 69.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.8e-90 337.0 585 69.1
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.7e-90 336.7 585 69.9
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.4e-89 334.7 585 70.6
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 5.3e-89 332.8 584 67.6
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 7.0e-89 332.4 585 68.0
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 7.0e-89 332.4 585 71.6
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.6e-88 330.5 585 68.2
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 7.7e-88 328.9 581 69.5
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.7e-88 328.9 590 63.7
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.3e-87 328.2 591 67.3
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.3e-87 328.2 587 67.5
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.2e-87 327.4 583 55.2
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 3.8e-87 326.6 564 74.8
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.1e-86 325.1 585 68.0
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.4e-86 324.7 587 71.4
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 1.9e-86 324.3 581 68.5
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 4.2e-86 323.2 581 67.1
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.2e-85 321.6 584 70.7
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.2e-85 321.6 581 68.3
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 2.1e-85 320.9 585 66.8
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 2.7e-85 320.5 590 66.6
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 5.2e-84 316.2 585 71.1
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 3.3e-83 313.5 581 68.0
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.2e-82 310.8 582 72.0
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 3.7e-82 310.1 574 59.9
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 4.8e-82 309.7 581 70.9
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.4e-81 308.1 591 66.7
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.2e-80 305.1 505 71.1
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 5.9e-80 302.8 590 64.9
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.1e-78 298.5 582 67.5
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.5e-78 298.1 631 65.5
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.9e-78 297.7 598 64.2
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 2.5e-78 297.4 507 72.8
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.5e-78 297.4 589 57.6
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 7.2e-78 295.8 365 66.6
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 2.3e-76 290.8 585 68.4
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 3.0e-76 290.4 598 62.7
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 8.8e-76 288.9 581 69.9
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.5e-75 288.1 582 68.9
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.0e-75 287.7 573 64.4
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 2.0e-75 287.7 585 67.4
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 2.0e-75 287.7 585 68.9
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 3.4e-75 287.0 615 67.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 2.2e-74 284.3 585 70.1
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.1e-73 282.0 410 68.8
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.8e-73 281.2 593 63.7
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 5.3e-73 279.6 562 65.5
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.6e-72 278.1 557 64.6
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 5.9e-72 276.2 586 67.4
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.3e-71 275.0 644 56.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.3e-71 275.0 582 67.9
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.2e-71 274.2 532 65.8
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 3.8e-71 273.5 585 64.6
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 3.8e-71 273.5 581 65.6
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.0e-71 273.1 596 60.9
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 5.0e-71 273.1 507 61.3
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 6.5e-71 272.7 564 68.6
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.2e-70 270.4 582 67.4
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 4.2e-70 270.0 582 68.9
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.2e-69 268.5 562 69.2
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 6.1e-69 266.2 585 62.2
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.4e-68 265.0 685 60.7
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 3.0e-68 263.8 507 67.1
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.0e-67 261.2 310 63.2
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.0e-67 261.2 560 68.6
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 3.1e-65 253.8 417 64.0
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 7.7e-64 249.2 585 65.1
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 3.3e-62 243.8 588 64.8
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 5.5e-62 243.0 451 71.0
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 5.5e-62 243.0 595 58.5
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.1e-61 241.1 559 40.4
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.5e-59 235.0 517 67.1
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 4.4e-59 233.4 572 61.0
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 7.5e-59 232.6 328 66.2
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 9.2e-57 225.7 561 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 5.6e-54 216.5 592 54.7
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 8.0e-53 212.6 221 63.8
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 2.3e-52 211.1 582 57.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 8.9e-44 182.6 584 58.4
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 7.1e-41 172.9 541 59.0
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.4e-36 158.7 245 51.8
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 4.9e-34 150.2 198 57.6
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 2.1e-32 144.8 243 39.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.3e-31 142.1 147 51.0
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 2.7e-24 117.9 160 46.9
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.6e-23 113.2 119 50.4
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.6e-21 108.6 75 69.3
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-21 106.7 133 67.7
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-21 106.7 133 67.7
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-21 106.7 133 67.7
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 6.2e-21 106.7 75 66.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 6.2e-21 106.7 75 66.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.8e-20 105.1 75 65.3
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 4.0e-20 104.0 75 65.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.6e-19 99.8 98 54.1
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 3.0e-15 87.8 90 51.1
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.0e-12 77.4 98 70.4
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.2e-11 75.9 98 70.4
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 2.0e-11 75.1 301 31.6
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 4.5e-11 73.9 53 60.4
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 5.8e-11 73.6 60 55.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 4.9e-10 70.5 75 44.0
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 4.9e-10 70.5 238 43.7
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.4e-09 68.2 46 73.9
Gohir.D05G351100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.8e-07 62.0 163 32.5
Gorai.009G381300 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.8e-07 62.0 163 32.5
Gorai.009G385200 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.9e-06 58.5 162 30.9
Gohir.A04G033550 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.3e-06 57.8 152 30.3


User provided reference genes

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