Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 9.4e-104 380.2 189 100.0
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 8.5e-97 357.1 189 94.2
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.8e-78 296.2 187 75.9
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 5.0e-73 278.1 187 70.1
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 6.6e-73 277.7 187 70.1
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 4.3e-72 275.0 187 69.5
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.5e-72 273.9 187 67.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.8e-71 272.3 187 68.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.7e-71 271.6 187 70.6
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 6.1e-71 271.2 187 69.0
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.4e-70 270.0 187 67.9
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.4e-70 270.0 187 68.4
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.3e-70 269.2 187 66.8
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.3e-70 269.2 187 66.8
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 4.0e-70 268.5 187 67.4
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.0e-70 268.5 187 67.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 6.8e-70 267.7 187 67.9
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 6.8e-70 267.7 186 67.7
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.2e-69 266.9 187 67.4
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.5e-69 266.5 187 66.3
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.5e-69 266.5 187 67.4
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.5e-69 266.5 187 67.4
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.0e-69 266.2 187 66.8
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 2.6e-69 265.8 186 66.7
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.4e-69 265.4 187 69.0
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 3.4e-69 265.4 186 66.7
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.4e-69 265.4 186 66.1
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 4.4e-69 265.0 187 68.4
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 5.8e-69 264.6 187 67.4
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.5e-69 264.2 187 66.8
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 7.5e-69 264.2 187 67.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 7.5e-69 264.2 187 67.4
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 9.8e-69 263.8 187 66.8
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.3e-68 263.5 186 65.6
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.3e-68 263.5 186 65.6
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 2.2e-68 262.7 187 66.8
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.9e-68 262.3 187 66.3
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.9e-68 262.3 187 66.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.9e-68 262.3 187 66.8
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 4.9e-68 261.5 187 66.8
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.9e-68 261.5 187 67.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 6.4e-68 261.2 187 66.3
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 6.4e-68 261.2 187 66.8
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 6.4e-68 261.2 187 66.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 6.4e-68 261.2 187 65.8
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 8.3e-68 260.8 187 65.8
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 8.3e-68 260.8 187 65.8
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 8.3e-68 260.8 187 65.8
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 8.3e-68 260.8 187 66.8
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 8.3e-68 260.8 187 66.8
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 8.3e-68 260.8 187 66.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.1e-67 260.4 187 66.8
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-67 260.4 180 67.2
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.1e-67 260.4 187 65.8
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 65.8
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 66.3
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 65.2
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 65.8
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.9e-67 259.6 187 64.7
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.4e-67 259.2 187 65.8
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.4e-67 259.2 187 65.8
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.4e-67 259.2 187 65.2
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.4e-67 259.2 187 65.2
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 3.2e-67 258.8 187 64.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 4.1e-67 258.5 187 65.2
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 4.1e-67 258.5 187 65.2
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 4.1e-67 258.5 187 64.7
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 5.4e-67 258.1 187 65.8
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 5.4e-67 258.1 187 65.2
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 7.0e-67 257.7 187 64.2
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 7.0e-67 257.7 187 65.2
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 7.0e-67 257.7 187 65.2
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 7.0e-67 257.7 187 65.2
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 7.0e-67 257.7 187 66.3
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 9.2e-67 257.3 187 63.6
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 9.2e-67 257.3 187 64.7
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 9.2e-67 257.3 187 66.3
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.2e-66 256.9 187 65.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.2e-66 256.9 187 64.2
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.6e-66 256.5 187 65.2
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.6e-66 256.5 187 65.2
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.6e-66 256.5 187 66.3
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.6e-66 256.5 187 64.7
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 2.0e-66 256.1 187 65.2
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 2.0e-66 256.1 187 65.8
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 2.7e-66 255.8 187 64.2
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.7e-66 255.8 187 65.8
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.7e-66 255.8 187 64.7
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.5e-66 255.4 187 65.8
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.5e-66 255.4 187 64.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.5e-66 255.4 187 64.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.5e-66 255.4 187 65.2
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 4.6e-66 255.0 187 64.7
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 4.6e-66 255.0 187 66.8
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.6e-66 255.0 187 65.2
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 6.0e-66 254.6 187 65.8
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 6.0e-66 254.6 180 67.8
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 7.8e-66 254.2 187 64.7
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.0e-65 253.8 187 64.7
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.0e-65 253.8 187 65.8
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.3e-65 253.4 187 65.2
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.7e-65 253.1 187 63.1
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.7e-65 253.1 189 64.6
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.7e-65 253.1 187 66.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.7e-65 253.1 187 62.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.7e-65 253.1 187 65.2
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.7e-65 253.1 187 65.2
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.3e-65 252.7 187 64.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 3.0e-65 252.3 189 63.0
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 8.6e-65 250.8 187 63.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-64 250.4 189 64.0
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-64 250.4 189 64.0
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.1e-64 250.4 187 64.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.5e-64 250.0 187 63.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.5e-64 249.2 187 65.2
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 4.3e-64 248.4 188 63.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 9.5e-64 247.3 179 64.8
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.1e-62 243.8 187 64.2
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.4e-62 243.4 188 64.4
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.3e-62 242.7 187 61.5
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 4.0e-62 241.9 169 66.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 5.2e-62 241.5 188 62.8
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 6.8e-62 241.1 187 61.0
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 7.5e-61 237.7 187 62.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.7e-60 236.5 178 62.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.7e-60 236.5 178 63.5
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 4.9e-60 235.0 188 62.8
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 4.9e-60 235.0 188 62.2
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.1e-59 233.8 187 58.3
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.1e-59 233.8 188 61.2
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.4e-59 233.4 188 61.2
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.9e-59 233.0 188 61.7
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.2e-59 232.3 187 59.9
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 5.4e-59 231.5 187 61.0
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.0e-57 227.3 187 59.4
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.0e-57 227.3 187 59.4
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-57 226.9 173 62.4
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.3e-54 216.1 188 54.8
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-53 213.8 187 58.8
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 7.5e-53 211.1 187 54.0
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 7.5e-53 211.1 187 57.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.2e-52 209.5 187 57.8
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 4.9e-52 208.4 177 58.2
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.3e-49 200.3 180 56.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 8.6e-49 197.6 177 56.5
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 4.2e-43 178.7 168 56.0
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 7.8e-42 174.5 187 48.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.7e-41 173.3 187 48.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 3.4e-37 159.1 119 61.3
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.1e-32 144.1 114 60.5
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 4.3e-32 142.1 108 64.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 6.9e-30 134.8 127 52.0
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 5.4e-27 125.2 121 57.0
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.4e-27 125.2 187 39.0
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.6e-26 122.1 172 40.7
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.0e-25 120.9 84 69.0
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.5e-21 107.1 77 63.6
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 2.5e-19 99.8 64 68.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 1.1e-11 74.3 92 44.6


User provided reference genes

Program Settings