Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 0.0e+00 1510.7 797 100.0
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.9e-232 808.1 798 56.9
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.2e-229 800.4 804 56.6
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 4.4e-227 792.0 799 55.1
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 5.7e-227 791.6 780 56.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 2.2e-226 789.6 796 55.7
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 6.3e-226 788.1 806 55.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 4.5e-224 781.9 797 55.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 7.7e-224 781.2 813 55.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.3e-223 780.4 798 56.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.2e-223 779.6 804 55.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 3.8e-223 778.9 798 54.5
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.5e-222 776.9 813 55.7
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.1e-221 773.1 812 53.9
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 6.1e-221 771.5 792 54.4
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.8e-220 770.0 789 54.0
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.0e-220 769.2 793 55.5
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 4.0e-220 768.8 791 56.5
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.3e-218 763.8 791 54.9
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 2.8e-218 762.7 807 53.8
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 4.8e-218 761.9 790 53.5
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 6.3e-218 761.5 816 53.8
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 6.3e-218 761.5 805 53.8
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 8.3e-218 761.1 484 82.0
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.4e-217 759.6 807 53.5
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 7.0e-217 758.1 809 53.4
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.0e-216 756.5 792 53.9
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 5.9e-216 755.0 801 54.2
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 7.7e-216 754.6 797 52.8
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.3e-215 753.8 784 54.5
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.2e-215 753.1 791 55.0
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 6.5e-215 751.5 760 56.1
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 6.5e-215 751.5 798 55.6
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.2e-214 749.2 815 53.4
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 4.2e-214 748.8 796 53.3
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.2e-213 747.3 789 54.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.2e-213 747.3 760 55.8
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 2.1e-213 746.5 798 52.6
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.4e-212 743.8 790 55.2
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.8e-212 743.4 812 52.8
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.8e-212 743.4 794 53.5
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.0e-212 742.7 801 53.7
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.0e-212 742.7 790 54.8
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 4.0e-212 742.3 801 53.7
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 8.8e-212 741.1 783 53.4
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-211 740.3 822 52.9
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 2.0e-211 740.0 799 52.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.0e-211 740.0 820 52.9
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.6e-211 739.6 792 53.8
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 4.4e-211 738.8 793 53.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 5.7e-211 738.4 790 52.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 7.5e-211 738.0 791 54.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.8e-211 737.6 801 53.3
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 8.3e-210 734.6 812 53.2
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.1e-209 734.2 789 52.1
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.4e-209 733.0 805 51.4
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.1e-209 732.6 850 51.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.2e-208 730.7 793 53.3
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.2e-208 730.7 788 53.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 3.5e-208 729.2 794 51.8
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 3.5e-208 729.2 783 52.7
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.5e-208 728.8 790 53.2
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.5e-208 728.8 792 52.4
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 7.7e-208 728.0 789 53.6
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 8.6e-207 724.5 798 52.6
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.9e-206 723.4 793 54.5
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 4.2e-206 722.2 792 52.8
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.2e-205 720.7 799 51.8
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 8.0e-205 718.0 791 52.3
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.0e-204 717.6 792 51.9
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.3e-204 716.5 761 52.6
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 3.0e-204 716.1 772 52.2
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 4.0e-204 715.7 791 52.7
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 9.8e-203 711.1 792 53.5
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 4.9e-202 708.8 825 51.8
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.0e-200 703.4 788 52.5
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.9e-200 701.8 792 52.9
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.9e-200 701.8 806 50.9
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.0e-199 701.0 811 52.2
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.7e-199 700.3 810 52.0
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.3e-199 699.9 809 51.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.5e-198 697.2 812 52.0
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.5e-198 697.2 812 52.0
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.5e-198 697.2 812 52.0
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.5e-198 697.2 807 51.5
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.9e-198 696.8 815 52.1
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.9e-198 696.8 800 51.9
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 4.3e-198 695.7 789 52.6
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.4e-196 690.6 790 50.6
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.8e-195 685.3 709 55.6
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 7.5e-195 684.9 788 50.4
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 7.5e-195 684.9 842 49.4
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 8.3e-194 681.4 789 53.0
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-192 677.6 788 51.3
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 7.8e-192 674.9 788 51.0
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.3e-175 620.2 808 46.9
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 5.8e-171 605.5 617 57.5
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.5e-158 564.3 624 52.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.1e-156 558.1 845 43.0
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.3e-150 536.6 652 50.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.3e-150 536.6 652 50.2
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.9e-142 510.8 718 43.7
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 4.3e-142 509.6 458 58.7
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.2e-136 491.5 460 60.0
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.3e-134 483.0 463 56.8
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 6.3e-133 479.2 461 56.4
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 4.1e-132 476.5 463 56.2
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.2e-131 474.9 477 57.4
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 3.4e-131 473.4 463 55.9
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 8.5e-130 468.8 489 56.6
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.4e-129 468.0 486 52.7
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 8.8e-127 458.8 483 52.0
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 8.8e-127 458.8 483 52.0
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 7.4e-126 455.7 460 53.3
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 9.7e-126 455.3 461 55.5
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 9.1e-124 448.7 702 42.6
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.2e-123 448.4 459 52.9
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 2.6e-123 447.2 460 52.2
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.6e-123 447.2 458 53.5
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.4e-123 446.8 449 54.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.1e-118 431.8 571 47.3
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.3e-117 428.3 413 57.1
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.3e-117 428.3 452 52.9
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.2e-115 421.8 450 51.1
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.5e-115 420.2 507 47.5
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 7.7e-115 419.1 747 38.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.5e-113 414.1 449 49.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 5.5e-113 412.9 754 39.3
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.2e-111 406.4 472 49.4
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.3e-109 401.7 448 49.6
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.3e-109 401.7 464 52.8
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.8e-109 400.6 448 49.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 8.2e-109 399.1 448 49.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.0e-106 392.1 455 51.9
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 2.2e-101 374.4 684 39.2
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 8.8e-95 352.4 462 46.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.9e-90 337.4 296 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.8e-88 330.9 451 43.0
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.0e-82 312.4 315 57.8
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.1e-80 304.7 279 61.3
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 6.8e-71 273.1 197 71.6
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.6e-70 271.2 216 67.6
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.2e-64 252.3 339 46.9
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 2.4e-55 221.5 358 36.9
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 6.4e-53 213.4 742 29.6
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.9e-47 193.4 144 65.3
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.9e-47 193.4 144 65.3
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 7.9e-43 179.9 352 38.1
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.5e-41 175.6 433 29.3
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 2.5e-33 148.3 141 53.9
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-32 146.0 134 55.2
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-30 139.4 148 50.7
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.2e-20 104.4 89 57.3
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.6e-16 92.4 88 62.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.7e-13 82.4 74 52.7
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.1e-11 75.5 151 39.7
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.6e-11 74.7 151 38.4
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.8e-08 64.3 55 60.0


User provided reference genes

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