Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb255610 Zea mays HOM05D000483 ORTHO05D000158 3.5e-82 308.1 145 100.0
Os02g0760500 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 2.7e-26 122.5 64 93.8
ECA246G4436 Erigeron canadensis HOM05D000483 ORTHO05D000158 1.0e-20 104.0 60 80.0
Lsat_1_v5_gn_6_106280 Lactuca sativa HOM05D000483 ORTHO05D000158 3.5e-18 95.5 63 69.8
HanXRQChr05g0163431 Helianthus annuus HOM05D000483 ORTHO05D000158 1.0e-17 94.0 59 74.6
Sed0017995 Sechium edule HOM05D000483 ORTHO05D000158 1.8e-17 93.2 66 69.7
CANSAT25G1929 Cannabis sativa HOM05D000483 ORTHO05D000158 3.0e-17 92.4 74 67.6
Ciclev10030411m.g Citrus clementina HOM05D000483 ORTHO05D000158 3.0e-17 92.4 64 70.3
QL09p017542 Quercus lobata HOM05D000483 ORTHO05D000158 3.0e-17 92.4 69 69.6
vmacro04662 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 3.0e-17 92.4 66 71.2
Nitab4.5_0003525g0050 Nicotiana tabacum HOM05D000483 ORTHO05D000158 3.9e-17 92.0 70 65.7
Potri.002G104700 Populus trichocarpa HOM05D000483 ORTHO05D000158 3.9e-17 92.0 73 68.5
Cfa013690 Carpinus fangiana HOM05D000483 ORTHO05D000158 5.1e-17 91.7 69 71.0
DCAR_020017 Daucus carota HOM05D000483 ORTHO05D000158 5.1e-17 91.7 65 67.7
Cc10_g15780 Coffea canephora HOM05D000483 ORTHO05D000158 8.7e-17 90.9 63 69.8
MD15G1383800 Malus domestica HOM05D000483 ORTHO05D000158 8.7e-17 90.9 70 70.0
Nitab4.5_0000131g0380 Nicotiana tabacum HOM05D000483 ORTHO05D000158 8.7e-17 90.9 70 64.3
THA.LOC104816800 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 8.7e-17 90.9 69 69.6
Thecc.08G069300 Theobroma cacao HOM05D000483 ORTHO05D000158 8.7e-17 90.9 72 69.4
ClCG08G011740 Citrullus lanatus HOM05D000483 ORTHO05D000158 1.1e-16 90.5 68 67.6
Atru.chr13.1029 Acer truncatum HOM05D000483 ORTHO05D000158 1.5e-16 90.1 67 67.2
CiPaw.07G166800 Carya illinoinensis HOM05D000483 ORTHO05D000158 1.5e-16 90.1 71 66.2
Medtr5g065980 Medicago truncatula HOM05D000483 ORTHO05D000158 1.5e-16 90.1 69 68.1
Eucgr.F00412 Eucalyptus grandis HOM05D000483 ORTHO05D000158 1.9e-16 89.7 66 71.2
Lj4A89G41 Lonicera japonica HOM05D000483 ORTHO05D000158 1.9e-16 89.7 70 65.7
Prupe.1G529900 Prunus persica HOM05D000483 ORTHO05D000158 1.9e-16 89.7 72 69.4
HPP92_016736 Vanilla planifolia HOM05D000483 ORTHO05D000158 1.9e-16 89.7 73 64.4
LjContig00408g0017560 Lotus japonicus HOM05D000483 ORTHO05D000158 3.3e-16 89.0 74 62.2
Nn5g29915 Nelumbo nucifera HOM05D000483 ORTHO05D000158 3.3e-16 89.0 67 70.1
ATR0022G067 Amborella trichopoda HOM05D000483 ORTHO05D000158 4.3e-16 88.6 69 66.7
Manes.18G059911 Manihot esculenta HOM05D000483 ORTHO05D000158 4.3e-16 88.6 70 64.3
RcHm_v2.0_Chr7g0236901 Rosa chinensis HOM05D000483 ORTHO05D000158 4.3e-16 88.6 70 68.6
FvH4_5g35520 Fragaria vesca HOM05D000483 ORTHO05D000158 5.7e-16 88.2 71 64.8
Hma1.2p1_0010F.1_g006860 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 5.7e-16 88.2 71 64.8
Peaxi162Scf00281g00016 Petunia axillaris HOM05D000483 ORTHO05D000158 5.7e-16 88.2 70 64.3
Psat2g068000 Pisum sativum HOM05D000483 ORTHO05D000158 5.7e-16 88.2 69 66.7
TPR.G16025 Trifolium pratense HOM05D000483 ORTHO05D000158 5.7e-16 88.2 68 67.6
Actinidia29619 Actinidia chinensis HOM05D000483 ORTHO05D000158 7.4e-16 87.8 69 66.7
Aa31LG1G5250 Aethionema arabicum HOM05D000483 ORTHO05D000158 7.4e-16 87.8 68 66.2
EL10Ac1g01068 Beta vulgaris HOM05D000483 ORTHO05D000158 7.4e-16 87.8 64 67.2
CAN.G475.44 Capsicum annuum HOM05D000483 ORTHO05D000158 7.4e-16 87.8 71 63.4
PSO017G1275 Papaver somniferum HOM05D000483 ORTHO05D000158 7.4e-16 87.8 78 59.0
PSO170G4415 Papaver somniferum HOM05D000483 ORTHO05D000158 7.4e-16 87.8 78 59.0
A08p34380 Brassica napus HOM05D000483 ORTHO05D000158 9.7e-16 87.4 68 67.6
BraA08t35350Z Brassica rapa HOM05D000483 ORTHO05D000158 9.7e-16 87.4 68 67.6
Duzib093G0554 Durio zibethinus HOM05D000483 ORTHO05D000158 9.7e-16 87.4 69 66.7
MBI02_g32613_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 9.7e-16 87.4 68 67.6
PGR042G2427 Punica granatum HOM05D000483 ORTHO05D000158 9.7e-16 87.4 72 65.3
Sabra02G0082200 Salix brachista HOM05D000483 ORTHO05D000158 9.7e-16 87.4 70 68.6
PGSC0003DMG400012895 Solanum tuberosum HOM05D000483 ORTHO05D000158 1.3e-15 87.0 69 62.3
CSS0003758 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 1.6e-15 86.7 65 69.2
Carub.0001s0908 Capsella rubella HOM05D000483 ORTHO05D000158 1.6e-15 86.7 68 66.2
TAR628G0502 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.6e-15 86.7 71 63.4
GSVIVG01009157001 Vitis vinifera HOM05D000483 ORTHO05D000158 2.2e-15 86.3 68 63.2
Ah.05g170770 Amaranthus hybridus HOM05D000483 ORTHO05D000158 2.8e-15 85.9 64 65.6
C08p13150 Brassica napus HOM05D000483 ORTHO05D000158 2.8e-15 85.9 68 66.2
BolC8t48943H Brassica oleracea HOM05D000483 ORTHO05D000158 2.8e-15 85.9 68 66.2
Thhalv10008924m.g Eutrema salsugineum HOM05D000483 ORTHO05D000158 2.8e-15 85.9 68 66.2
Gohir.A06G032620 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.8e-15 85.9 69 60.9
Gohir.D06G032200 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.8e-15 85.9 69 60.9
BcaNung06982 Brassica carinata HOM05D000483 ORTHO05D000158 3.7e-15 85.5 68 64.7
Gorai.010G035500 Gossypium raimondii HOM05D000483 ORTHO05D000158 3.7e-15 85.5 69 60.9
Solyc04g076200.3 Solanum lycopersicum HOM05D000483 ORTHO05D000158 3.7e-15 85.5 72 61.1
CsaV3_2G030360 Cucumis sativus L. HOM05D000483 ORTHO05D000158 6.3e-15 84.7 68 63.2
FAN18G1753 Fragaria x ananassa HOM05D000483 ORTHO05D000158 6.3e-15 84.7 71 63.4
Sopen04g030000 Solanum pennellii HOM05D000483 ORTHO05D000158 6.3e-15 84.7 72 61.1
Glyma.14G181000 Glycine max HOM05D000483 ORTHO05D000158 8.2e-15 84.3 68 66.2
Rhsim07G0211300 Rhododendron simsii HOM05D000483 ORTHO05D000158 8.2e-15 84.3 70 62.9
Hund16864 Selenicereus undatus HOM05D000483 ORTHO05D000158 1.1e-14 84.0 67 65.7
BraA06t23853Z Brassica rapa HOM05D000483 ORTHO05D000158 1.4e-14 83.6 68 64.7
CARHR009710 Cardamine hirsuta HOM05D000483 ORTHO05D000158 1.4e-14 83.6 68 63.2
Hund27013 Selenicereus undatus HOM05D000483 ORTHO05D000158 1.4e-14 83.6 64 64.1
FAN08G2412 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.8e-14 83.2 68 63.2
Oeu012752.2 Olea europaea HOM05D000483 ORTHO05D000158 1.8e-14 83.2 63 66.7
AL1G20290 Arabidopsis lyrata HOM05D000483 ORTHO05D000158 2.4e-14 82.8 68 64.7
AT1G09740 Arabidopsis thaliana HOM05D000483 ORTHO05D000158 2.4e-14 82.8 68 64.7
AUR62019037 Chenopodium quinoa HOM05D000483 ORTHO05D000158 2.4e-14 82.8 65 67.7
AUR62027874 Chenopodium quinoa HOM05D000483 ORTHO05D000158 2.4e-14 82.8 65 67.7
arahy.Tifrunner.gnm1.ann1.AGS0VV Arachis hypogaea HOM05D000483 ORTHO05D000158 3.1e-14 82.4 68 63.2
arahy.Tifrunner.gnm1.ann1.M8HDEY Arachis hypogaea HOM05D000483 ORTHO05D000158 3.1e-14 82.4 68 63.2
Peaxi162Scf00210g00510 Petunia axillaris HOM05D000483 ORTHO05D000158 3.1e-14 82.4 62 66.1
Sp1g08330 Schrenkiella parvula HOM05D000483 ORTHO05D000158 3.1e-14 82.4 68 63.2
Sc01g0001110 Simmondsia chinensis HOM05D000483 ORTHO05D000158 3.1e-14 82.4 68 64.7
A06p06420 Brassica napus HOM05D000483 ORTHO05D000158 4.1e-14 82.0 68 63.2
SEGI_12524 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 6.9e-14 81.3 69 63.8
Glyma.02G213100 Glycine max HOM05D000483 ORTHO05D000158 9.0e-14 80.9 68 60.3
Lalb_Chr04g0252911 Lupinus albus HOM05D000483 ORTHO05D000158 9.0e-14 80.9 71 62.0
TWI12G1139 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 9.0e-14 80.9 66 63.6
VMungo0647G2464 Vigna mungo HOM05D000483 ORTHO05D000158 9.0e-14 80.9 68 60.3
FAN04G2089 Fragaria x ananassa HOM05D002435 ORTHO05D002550 1.2e-13 80.5 67 62.7
C05p07820 Brassica napus HOM05D000483 ORTHO05D000158 2.0e-13 79.7 70 61.4
BolC5t29533H Brassica oleracea HOM05D000483 ORTHO05D000158 2.0e-13 79.7 70 61.4
CDE03G0483 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 2.0e-13 79.7 65 60.0
Phvul.008G180800 Phaseolus vulgaris HOM05D000483 ORTHO05D000158 5.9e-13 78.2 68 60.3
CAN.G418.18 Capsicum annuum HOM05D000483 ORTHO05D000158 1.0e-12 77.4 66 60.6
CiPaw.06G032200 Carya illinoinensis HOM05D000483 ORTHO05D000158 1.3e-12 77.0 67 56.7
Os10g0318900 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 5.0e-12 75.1 42 85.7
COL.COLO4_35215 Corchorus olitorius HOM05D000483 ORTHO05D000158 4.2e-11 72.0 56 67.9
Ciclev10003311m.g Citrus clementina HOM05D000483 ORTHO05D000158 1.2e-10 70.5 70 54.3
MELO3C010306.2 Cucumis melo HOM05D000483 ORTHO05D000158 4.3e-08 62.0 53 58.5


User provided reference genes

Program Settings