Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb251010 Zea mays HOM05D018866 ORTHO05D002963 1.2e-93 347.1 249 100.0
Os02g0687500 Oryza sativa ssp. japonica HOM05D018866 ORTHO05D002963 7.7e-29 131.7 80 80.0
Zm00001eb187460 Zea mays HOM05D000410 ORTHO05D002963 3.8e-28 129.4 206 54.9
Zm00001eb103430 Zea mays HOM05D018866 ORTHO05D002963 2.7e-26 123.2 80 80.0
Zm00001eb311570 Zea mays HOM05D039816 ORTHO05D445245 3.8e-20 102.8 63 74.6
Zm00001eb179670 Zea mays HOM05D018866 ORTHO05D002963 3.9e-17 92.8 66 74.2
EL10Ac5g12214 Beta vulgaris HOM05D000410 ORTHO05D002963 2.2e-15 87.0 182 35.2
Peaxi162Scf00084g00027 Petunia axillaris HOM05D000410 ORTHO05D002963 2.8e-15 86.7 181 40.9
Actinidia10871 Actinidia chinensis HOM05D000410 ORTHO05D002963 3.7e-15 86.3 181 37.6
Dinv25169 Davidia involucrata HOM05D000410 ORTHO05D002963 3.7e-15 86.3 179 35.8
Actinidia31483 Actinidia chinensis HOM05D000410 ORTHO05D002963 6.3e-15 85.5 181 36.5
HPP92_014648 Vanilla planifolia HOM05D000410 ORTHO05D002963 8.2e-15 85.1 181 34.3
COL.COLO4_06707 Corchorus olitorius HOM05D000410 ORTHO05D002963 1.4e-14 84.3 187 50.3
Solyc08g077460.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 2.4e-14 83.6 185 34.6
Sopen08g026050 Solanum pennellii HOM05D000410 ORTHO05D002963 2.4e-14 83.6 185 38.4
AUR62018798 Chenopodium quinoa HOM05D000410 ORTHO05D002963 3.1e-14 83.2 182 44.0
Dinv28900 Davidia involucrata HOM05D000410 ORTHO05D002963 3.1e-14 83.2 186 36.0
Manes.17G020100 Manihot esculenta HOM05D000410 ORTHO05D002963 4.1e-14 82.8 185 34.1
Duzib205G1992 Durio zibethinus HOM05D000410 ORTHO05D002963 5.3e-14 82.4 188 46.8
Gohir.A08G161400 Gossypium hirsutum HOM05D000410 ORTHO05D002963 5.3e-14 82.4 183 42.6
Sopen06g021170 Solanum pennellii HOM05D000410 ORTHO05D002963 5.3e-14 82.4 181 34.3
Nitab4.5_0001708g0030 Nicotiana tabacum HOM05D000410 ORTHO05D002963 7.0e-14 82.0 181 33.7
Solyc06g061020.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 7.0e-14 82.0 181 34.3
Thecc.03G236500 Theobroma cacao HOM05D000410 ORTHO05D002963 7.0e-14 82.0 188 35.6
Nitab4.5_0007226g0020 Nicotiana tabacum HOM05D000410 ORTHO05D002963 9.1e-14 81.6 181 37.6
Potri.003G085800 Populus trichocarpa HOM05D000410 ORTHO05D002963 9.1e-14 81.6 189 36.0
PGSC0003DMG400001841 Solanum tuberosum HOM05D000410 ORTHO05D002963 1.2e-13 81.3 185 34.1
PGSC0003DMG400026593 Solanum tuberosum HOM05D000410 ORTHO05D002963 1.2e-13 81.3 181 34.3
Ah.12g053780 Amaranthus hybridus HOM05D000410 ORTHO05D002963 1.6e-13 80.9 181 32.6
MBI04_g44417_MAGBIO Magnolia biondii HOM05D000410 ORTHO05D002963 1.6e-13 80.9 185 34.1
MBI04_g45962_MAGBIO Magnolia biondii HOM05D000410 ORTHO05D002963 1.6e-13 80.9 185 34.1
GSVIVG01013266001 Vitis vinifera HOM05D000410 ORTHO05D002963 1.6e-13 80.9 182 34.6
CSS0004938 Camellia sinensis var. sinensis HOM05D000410 ORTHO05D002963 2.6e-13 80.1 179 43.6
Gohir.D08G181300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 2.6e-13 80.1 183 51.9
TWI60G0489 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 2.6e-13 80.1 186 34.9
CANSAT21G1942 Cannabis sativa HOM05D000410 ORTHO05D002963 3.5e-13 79.7 186 33.3
Glyma.01G203300 Glycine max HOM05D000410 ORTHO05D002963 3.5e-13 79.7 179 36.3
Rhsim07G0120500 Rhododendron simsii HOM05D000410 ORTHO05D002963 3.5e-13 79.7 179 34.6
PGR031G3665 Punica granatum HOM05D000410 ORTHO05D002963 4.5e-13 79.3 182 33.0
TWI81G0043 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 4.5e-13 79.3 186 34.4
TAR375G0421 Trochodendron aralioides HOM05D000410 ORTHO05D002963 4.5e-13 79.3 182 35.7
DCAR_008308 Daucus carota HOM05D000410 ORTHO05D002963 7.7e-13 78.6 179 30.7
Eucgr.E00327 Eucalyptus grandis HOM05D000410 ORTHO05D002963 7.7e-13 78.6 181 53.0
Hma1.2p1_0311F.1_g121150 Hydrangea macrophylla HOM05D000410 ORTHO05D002963 7.7e-13 78.6 190 53.7
Sabra01G0118500 Salix brachista HOM05D000410 ORTHO05D002963 7.7e-13 78.6 187 33.2
Duzib068G0858 Durio zibethinus HOM05D000410 ORTHO05D002963 1.0e-12 78.2 188 34.0
Sabra03G0055700 Salix brachista HOM05D000410 ORTHO05D002963 1.0e-12 78.2 188 34.6
AUR62007204 Chenopodium quinoa HOM05D000410 ORTHO05D002963 1.3e-12 77.8 184 39.1
MD06G1043600 Malus domestica HOM05D000410 ORTHO05D002963 1.3e-12 77.8 188 33.5
PGR042G2973 Punica granatum HOM05D000410 ORTHO05D002963 1.3e-12 77.8 183 32.8
vmacro00369 Vaccinium macrocarpon HOM05D000410 ORTHO05D002963 1.3e-12 77.8 176 33.5
Cc08_g01570 Coffea canephora HOM05D000410 ORTHO05D002963 2.2e-12 77.0 197 30.5
Eucgr.D02146 Eucalyptus grandis HOM05D000410 ORTHO05D002963 2.2e-12 77.0 188 36.2
Manes.15G171500 Manihot esculenta HOM05D000410 ORTHO05D002963 2.2e-12 77.0 185 32.4
Nitab4.5_0000506g0240 Nicotiana tabacum HOM05D000410 ORTHO05D002963 2.2e-12 77.0 181 33.1
Nitab4.5_0000185g0300 Nicotiana tabacum HOM05D000410 ORTHO05D002963 2.9e-12 76.6 182 33.0
Actinidia03400 Actinidia chinensis HOM05D000410 ORTHO05D002963 3.8e-12 76.3 176 33.0
Gorai.008G229800 Gossypium raimondii HOM05D000410 ORTHO05D002963 3.8e-12 76.3 183 34.4
Hma1.2p1_0414F.1_g147550 Hydrangea macrophylla HOM05D000410 ORTHO05D002963 3.8e-12 76.3 189 33.3
Actinidia25931 Actinidia chinensis HOM05D000410 ORTHO05D002963 5.0e-12 75.9 176 33.5
Cfa012361 Carpinus fangiana HOM05D000410 ORTHO05D002963 5.0e-12 75.9 184 42.4
Glyma.11G039700 Glycine max HOM05D000410 ORTHO05D002963 5.0e-12 75.9 178 38.8
Nitab4.5_0009819g0010 Nicotiana tabacum HOM05D000410 ORTHO05D002963 5.0e-12 75.9 181 33.1
PSO063G3541 Papaver somniferum HOM05D000410 ORTHO05D002963 5.0e-12 75.9 195 32.3
Zm00001eb320720 Zea mays HOM05D018866 ORTHO05D002963 5.0e-12 75.9 36 94.4
Gohir.D12G214200 Gossypium hirsutum HOM05D000410 ORTHO05D002963 6.5e-12 75.5 183 41.0
Gorai.004G190300 Gossypium raimondii HOM05D000410 ORTHO05D002963 6.5e-12 75.5 183 55.7
Hund11297 Selenicereus undatus HOM05D000410 ORTHO05D002963 6.5e-12 75.5 187 33.2
Gohir.A12G211700 Gossypium hirsutum HOM05D000410 ORTHO05D002963 8.5e-12 75.1 183 33.9
Solyc08g007120.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 8.5e-12 75.1 185 33.5
FAN13G1868 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.1e-11 74.7 191 33.5
Gohir.D11G028100 Gossypium hirsutum HOM05D000410 ORTHO05D002963 1.1e-11 74.7 193 32.6
vmacro14113 Vaccinium macrocarpon HOM05D000410 ORTHO05D002963 1.1e-11 74.7 240 29.2
Ciclev10020548m.g Citrus clementina HOM05D000410 ORTHO05D002963 1.5e-11 74.3 184 34.8
TAR636G3151 Trochodendron aralioides HOM05D000410 ORTHO05D002963 1.5e-11 74.3 181 33.7
Haze_08322 Corylus avellana HOM05D000410 ORTHO05D002963 1.9e-11 73.9 184 39.7
FvH4_5g20850 Fragaria vesca HOM05D000410 ORTHO05D002963 1.9e-11 73.9 192 32.8
FAN18G0369 Fragaria x ananassa HOM05D000410 ORTHO05D002963 1.9e-11 73.9 192 32.8
Peaxi162Scf00190g00029 Petunia axillaris HOM05D000410 ORTHO05D002963 1.9e-11 73.9 181 33.1
FAN08G2615 Fragaria x ananassa HOM05D000410 ORTHO05D002963 2.5e-11 73.6 192 32.8
Gorai.007G030800 Gossypium raimondii HOM05D000410 ORTHO05D002963 2.5e-11 73.6 193 32.1
Phvul.002G002700 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 2.5e-11 73.6 179 32.4
Sc01g0007850 Simmondsia chinensis HOM05D000410 ORTHO05D002963 2.5e-11 73.6 182 46.7
Atru.chr9.1140 Acer truncatum HOM05D000410 ORTHO05D002963 4.2e-11 72.8 188 33.0
Lj2g0008503 Lotus japonicus HOM05D000410 ORTHO05D002963 4.2e-11 72.8 180 40.0
VMungo1215G2465 Vigna mungo HOM05D000410 ORTHO05D002963 4.2e-11 72.8 179 33.0
Ah.07g199690 Amaranthus hybridus HOM05D000410 ORTHO05D002963 5.5e-11 72.4 182 31.3
arahy.Tifrunner.gnm1.ann1.D5YLID Arachis hypogaea HOM05D000410 ORTHO05D002963 5.5e-11 72.4 187 32.6
Glyma.17G150900 Glycine max HOM05D000410 ORTHO05D002963 5.5e-11 72.4 181 32.6
Zm00001eb390750 Zea mays HOM05D000410 ORTHO05D002963 5.5e-11 72.4 197 31.5
HPP92_020690 Vanilla planifolia HOM05D000410 ORTHO05D002963 7.2e-11 72.0 181 32.6
arahy.Tifrunner.gnm1.ann1.6R4MXJ Arachis hypogaea HOM05D000410 ORTHO05D002963 9.4e-11 71.6 183 30.6
arahy.Tifrunner.gnm1.ann1.I1CICT Arachis hypogaea HOM05D000410 ORTHO05D002963 9.4e-11 71.6 187 32.6
arahy.Tifrunner.gnm1.ann1.Y6VK3W Arachis hypogaea HOM05D000410 ORTHO05D002963 9.4e-11 71.6 183 30.6
PSO782G0633 Papaver somniferum HOM05D000410 ORTHO05D002963 9.4e-11 71.6 196 32.7
TAR629G2559 Trochodendron aralioides HOM05D000410 ORTHO05D002963 9.4e-11 71.6 181 34.3
BraA09t38905Z Brassica rapa HOM05D000410 ORTHO05D002963 1.2e-10 71.2 73 52.1
AL1G47020 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 1.6e-10 70.9 181 30.4
CiPaw.11G085800 Carya illinoinensis HOM05D000410 ORTHO05D002963 1.6e-10 70.9 189 31.7
CiPaw.12G058700 Carya illinoinensis HOM05D000410 ORTHO05D002963 1.6e-10 70.9 198 31.3
Sopen08g003070 Solanum pennellii HOM05D000410 ORTHO05D002963 1.6e-10 70.9 186 33.3
Lj2P250T9 Lonicera japonica HOM05D000410 ORTHO05D002963 2.1e-10 70.5 183 47.5
HPP92_014929 Vanilla planifolia HOM05D000410 ORTHO05D002963 2.1e-10 70.5 179 29.6
FAN04G2418 Fragaria x ananassa HOM05D000410 ORTHO05D002963 3.6e-10 69.7 192 31.2
Prupe.5G050300 Prunus persica HOM05D000410 ORTHO05D002963 3.6e-10 69.7 79 49.4
MELO3C003360.2 Cucumis melo HOM05D000410 ORTHO05D002963 6.1e-10 68.9 182 31.3
Thhalv10008231m.g Eutrema salsugineum HOM05D000410 ORTHO05D002963 6.1e-10 68.9 188 29.8
Oeu017311.1 Olea europaea HOM05D000410 ORTHO05D002963 6.1e-10 68.9 179 30.7
Carub.0001s3107 Capsella rubella HOM05D000410 ORTHO05D002963 8.0e-10 68.6 187 30.5
Lalb_Chr09g0324001 Lupinus albus HOM05D000410 ORTHO05D002963 8.0e-10 68.6 182 33.0
Os10g0565500 Oryza sativa ssp. japonica HOM05D000410 ORTHO05D002963 8.0e-10 68.6 185 38.9
Potri.001G148600 Populus trichocarpa HOM05D000410 ORTHO05D002963 8.0e-10 68.6 78 51.3
RcHm_v2.0_Chr7g0207871 Rosa chinensis HOM05D000410 ORTHO05D002963 8.0e-10 68.6 189 43.9
HPP92_014926 Vanilla planifolia HOM05D000410 ORTHO05D002963 8.0e-10 68.6 179 38.5
ClCG09G012480 Citrullus lanatus HOM05D000410 ORTHO05D002963 1.0e-09 68.2 182 36.3
CsaV3_3G049650 Cucumis sativus L. HOM05D000410 ORTHO05D002963 1.0e-09 68.2 182 31.3
Gohir.D03G169300 Gossypium hirsutum HOM05D000410 ORTHO05D002963 1.0e-09 68.2 187 50.3
Sed0020068 Sechium edule HOM05D000410 ORTHO05D002963 1.0e-09 68.2 179 31.8
Gorai.003G179400 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.4e-09 67.8 187 50.3
Lsat_1_v5_gn_3_15981 Lactuca sativa HOM05D000410 ORTHO05D002963 1.4e-09 67.8 179 29.6
MELO3C013883.2 Cucumis melo HOM05D000410 ORTHO05D002963 1.8e-09 67.4 184 31.0
Lalb_Chr05g0214161 Lupinus albus HOM05D000410 ORTHO05D002963 1.8e-09 67.4 182 31.3
Lsat_1_v5_gn_6_89121 Lactuca sativa HOM05D000410 ORTHO05D002963 2.3e-09 67.0 182 36.3
Sed0015081 Sechium edule HOM05D000410 ORTHO05D002963 3.0e-09 66.6 182 37.9
Aa31LG9G15200 Aethionema arabicum HOM05D000410 ORTHO05D002963 6.7e-09 65.5 196 28.6
Gohir.A03G003100 Gossypium hirsutum HOM05D000410 ORTHO05D002963 6.7e-09 65.5 187 49.7
QL12p007792 Quercus lobata HOM05D000410 ORTHO05D002963 6.7e-09 65.5 78 51.3
Sp1g28230 Schrenkiella parvula HOM05D000410 ORTHO05D002963 8.8e-09 65.1 74 48.6
TAR374G1463 Trochodendron aralioides HOM05D000410 ORTHO05D002963 8.8e-09 65.1 182 32.4
AT1G32740 Arabidopsis thaliana HOM05D000410 ORTHO05D002963 1.2e-08 64.7 187 28.9
AT4G17680 Arabidopsis thaliana HOM05D000410 ORTHO05D002963 1.2e-08 64.7 214 28.0
ECA240G1721 Erigeron canadensis HOM05D000410 ORTHO05D002963 1.2e-08 64.7 184 27.2
HanXRQChr17g0535651 Helianthus annuus HOM05D000410 ORTHO05D002963 1.2e-08 64.7 184 27.7
THA.LOC104812822 Tarenaya hassleriana HOM05D000410 ORTHO05D002963 1.2e-08 64.7 184 31.5
Lalb_Chr05g0220741 Lupinus albus HOM05D000410 ORTHO05D002963 1.5e-08 64.3 185 29.2
Sed0019352 Sechium edule HOM05D000410 ORTHO05D002963 1.5e-08 64.3 181 30.4
CARHR032120 Cardamine hirsuta HOM05D000410 ORTHO05D002963 2.0e-08 63.9 186 29.0
Phvul.003G227200 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 2.0e-08 63.9 182 37.9
Psat2g174360 Pisum sativum HOM05D000410 ORTHO05D002963 2.0e-08 63.9 182 30.2
CsaV3_3G002110 Cucumis sativus L. HOM05D000410 ORTHO05D002963 3.3e-08 63.2 184 28.8
Aqoxy3G02584 Aquilegia oxysepala HOM05D000410 ORTHO05D002963 4.4e-08 62.8 78 46.2
THA.LOC104806686 Tarenaya hassleriana HOM05D000410 ORTHO05D002963 4.4e-08 62.8 179 31.3
VMungo0251G2888 Vigna mungo HOM05D000410 ORTHO05D002963 4.4e-08 62.8 185 30.3
HanXRQChr06g0167201 Helianthus annuus HOM05D000410 ORTHO05D002963 5.7e-08 62.4 179 27.9
PGSC0003DMG400020510 Solanum tuberosum HOM05D000410 ORTHO05D002963 5.7e-08 62.4 186 30.6
TPR.G19186 Trifolium pratense HOM05D000410 ORTHO05D002963 7.5e-08 62.0 181 29.8
ClCG10G002020 Citrullus lanatus HOM05D000410 ORTHO05D002963 9.7e-08 61.6 184 31.0
Medtr4g099060 Medicago truncatula HOM05D000410 ORTHO05D002963 1.3e-07 61.2 181 29.8
Psat4g077520 Pisum sativum HOM05D000410 ORTHO05D002963 1.3e-07 61.2 181 28.7
CARHR224400 Cardamine hirsuta HOM05D000410 ORTHO05D002963 1.7e-07 60.8 186 27.4
ECA233G3513 Erigeron canadensis HOM05D000410 ORTHO05D002963 1.7e-07 60.8 188 30.9
TPR.G33935 Trifolium pratense HOM05D000410 ORTHO05D002963 2.2e-07 60.5 185 29.2
Medtr5g013690 Medicago truncatula HOM05D000410 ORTHO05D002963 2.8e-07 60.1 182 28.6
Zm00001eb037720 Zea mays HOM05D000411 ORTHO05D000310 2.8e-07 60.1 46 71.7
CSS0025021 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D002963 3.7e-07 59.7 177 27.1
Os04g0402500 Oryza sativa ssp. japonica HOM05D000410 ORTHO05D002963 4.8e-07 59.3 53 54.7
HanXRQChr03g0086941 Helianthus annuus HOM05D000410 ORTHO05D002963 1.8e-06 57.4 72 44.4
A03p50610 Brassica napus HOM05D000410 ORTHO05D002963 2.4e-06 57.0 80 42.5
Carub.0007s2370 Capsella rubella HOM05D000410 ORTHO05D002963 2.4e-06 57.0 188 27.7
CDE04G1820 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 2.4e-06 57.0 76 44.7
CDE12G0441 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 2.4e-06 57.0 76 43.4
HPP92_017747 Vanilla planifolia HOM05D000410 ORTHO05D001514 2.4e-06 57.0 53 52.8
BolC9t55787H Brassica oleracea HOM05D000410 ORTHO05D002963 3.1e-06 56.6 179 29.1
Glyma.05G068400 Glycine max HOM05D000410 ORTHO05D002963 3.1e-06 56.6 77 45.5
Lj4g0007315 Lotus japonicus HOM05D000410 ORTHO05D002963 3.1e-06 56.6 75 45.3
AL7G36910 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 4.1e-06 56.2 187 27.8
BcaC04g21656 Brassica carinata HOM05D000410 ORTHO05D002963 4.1e-06 56.2 179 29.1
Lalb_Chr09g0329641 Lupinus albus HOM05D000410 ORTHO05D002963 4.1e-06 56.2 189 27.0
Sp7g16460 Schrenkiella parvula HOM05D000410 ORTHO05D002963 4.1e-06 56.2 80 41.2
ATR0829G036 Amborella trichopoda HOM05D000410 ORTHO05D002963 5.3e-06 55.8 179 27.9
HPP92_017678 Vanilla planifolia HOM05D000410 ORTHO05D001514 5.3e-06 55.8 56 50.0
BcaC06g33572 Brassica carinata HOM05D000410 ORTHO05D002963 7.0e-06 55.5 80 41.2
C07p48930 Brassica napus HOM05D000410 ORTHO05D002963 7.0e-06 55.5 80 41.2
BolC7t45401H Brassica oleracea HOM05D000410 ORTHO05D002963 7.0e-06 55.5 80 41.2
unitig_26.g10076 Utricularia gibba HOM05D000410 ORTHO05D001514 9.1e-06 55.1 71 49.3


User provided reference genes

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