Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb248420 Zea mays HOM05D003498 ORTHO05D004191 1.5e-59 232.6 114 100.0
Zm00001eb208950 Zea mays HOM05D003498 ORTHO05D004191 1.7e-52 209.1 104 98.1
Zm00001eb311360 Zea mays HOM05D003498 ORTHO05D004191 9.8e-48 193.4 101 95.0
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 3.7e-47 191.4 94 98.9
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 1.6e-45 186.0 94 94.7
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 4.0e-41 171.4 94 81.9
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 2.0e-40 169.1 97 80.4
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 5.8e-40 167.5 94 79.8
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 9.8e-40 166.8 99 79.8
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 9.8e-40 166.8 94 80.9
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 9.8e-40 166.8 94 80.9
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 2.2e-39 165.6 99 75.8
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 2.9e-39 165.2 94 79.8
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 2.9e-39 165.2 93 83.9
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 2.9e-39 165.2 93 83.9
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 2.9e-39 165.2 95 80.0
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 4.9e-39 164.5 99 75.8
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 4.9e-39 164.5 93 81.7
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 6.4e-39 164.1 94 78.7
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 8.3e-39 163.7 94 79.8
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 8.3e-39 163.7 94 79.8
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 8.3e-39 163.7 93 83.9
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 8.3e-39 163.7 99 77.8
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 1.1e-38 163.3 93 80.6
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.1e-38 163.3 94 81.9
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 1.4e-38 162.9 99 77.8
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 1.4e-38 162.9 99 77.8
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 1.9e-38 162.5 93 82.8
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 1.9e-38 162.5 94 80.9
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 2.4e-38 162.2 94 79.8
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 2.4e-38 162.2 99 73.7
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 3.2e-38 161.8 99 74.7
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 3.2e-38 161.8 94 77.7
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 3.2e-38 161.8 95 77.9
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 78.7
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 78.7
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 78.7
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 4.1e-38 161.4 99 74.7
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 79.8
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 76.6
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 81.9
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 4.1e-38 161.4 94 81.9
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 4.1e-38 161.4 99 75.8
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 5.4e-38 161.0 94 80.9
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 7.1e-38 160.6 94 76.6
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 7.1e-38 160.6 94 79.8
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 7.1e-38 160.6 94 78.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 9.2e-38 160.2 98 76.5
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 9.2e-38 160.2 99 74.7
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 9.2e-38 160.2 94 75.5
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 9.2e-38 160.2 99 75.8
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 9.2e-38 160.2 94 77.7
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 1.2e-37 159.8 99 75.8
CDE09G0325 Ceratophyllum demersum HOM05D003498 ORTHO05D004191 1.2e-37 159.8 94 75.5
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 1.2e-37 159.8 94 77.7
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 1.2e-37 159.8 98 76.5
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 1.2e-37 159.8 99 75.8
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 1.2e-37 159.8 94 76.6
Medtr0271s0030 Medicago truncatula HOM05D003498 ORTHO05D004191 1.6e-37 159.5 93 77.4
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 1.6e-37 159.5 94 78.7
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 2.1e-37 159.1 93 77.4
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 2.1e-37 159.1 107 70.1
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 2.1e-37 159.1 94 75.5
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 2.7e-37 158.7 94 78.7
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 2.7e-37 158.7 94 77.7
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 2.7e-37 158.7 94 76.6
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 2.7e-37 158.7 94 76.6
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 2.7e-37 158.7 93 78.5
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 2.7e-37 158.7 93 79.6
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 2.7e-37 158.7 94 77.7
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 2.7e-37 158.7 94 79.8
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 2.7e-37 158.7 93 79.6
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 3.5e-37 158.3 94 76.6
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.5e-37 158.3 96 75.0
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 3.5e-37 158.3 94 75.5
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 3.5e-37 158.3 93 77.4
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 3.5e-37 158.3 94 78.7
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 4.6e-37 157.9 99 71.7
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 4.6e-37 157.9 94 75.5
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 4.6e-37 157.9 94 76.6
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 6.0e-37 157.5 93 78.5
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 6.0e-37 157.5 99 74.7
HPP92_003500 Vanilla planifolia HOM05D003498 ORTHO05D004191 6.0e-37 157.5 94 75.5
HPP92_026896 Vanilla planifolia HOM05D003498 ORTHO05D004191 6.0e-37 157.5 94 75.5
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 7.8e-37 157.1 99 72.7
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 7.8e-37 157.1 94 75.5
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 7.8e-37 157.1 94 75.5
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 7.8e-37 157.1 94 74.5
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 1.0e-36 156.8 94 76.6
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 1.0e-36 156.8 94 75.5
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 1.0e-36 156.8 98 72.4
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 1.0e-36 156.8 99 75.8
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 1.0e-36 156.8 93 77.4
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 1.0e-36 156.8 94 76.6
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 1.3e-36 156.4 94 78.7
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 1.3e-36 156.4 99 73.7
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 1.3e-36 156.4 94 75.5
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 1.3e-36 156.4 94 75.5
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 1.3e-36 156.4 93 76.3
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 1.7e-36 156.0 93 77.4
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 1.7e-36 156.0 99 75.8
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 2.3e-36 155.6 93 78.5
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 2.3e-36 155.6 99 72.7
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 3.0e-36 155.2 94 74.5
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 3.0e-36 155.2 94 75.5
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 5.1e-36 154.5 92 77.2
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 5.1e-36 154.5 93 76.3
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 5.1e-36 154.5 94 74.5
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 6.6e-36 154.1 99 71.7
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 6.6e-36 154.1 94 74.5
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 6.6e-36 154.1 94 74.5
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 6.6e-36 154.1 93 76.3
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 8.6e-36 153.7 99 70.7
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 8.6e-36 153.7 94 74.5
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 1.1e-35 153.3 94 72.3
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 1.1e-35 153.3 94 73.4
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 1.1e-35 153.3 99 70.7
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 1.5e-35 152.9 94 73.4
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 1.9e-35 152.5 94 73.4
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 1.9e-35 152.5 94 73.4
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 2.5e-35 152.1 94 71.3
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 2.5e-35 152.1 94 72.3
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 2.5e-35 152.1 99 70.7
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 3.3e-35 151.8 94 73.4
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 5.6e-35 151.0 112 67.9
ClCG07G012360 Citrullus lanatus HOM05D003498 ORTHO05D004191 9.5e-35 150.2 94 73.4
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 9.5e-35 150.2 94 75.5
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.2e-34 149.8 94 70.2
AUR62043688 Chenopodium quinoa HOM05D003498 ORTHO05D004191 3.6e-34 148.3 100 67.0
AUR62012113 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.0e-33 144.8 94 70.2
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 5.2e-33 144.4 106 65.1
MELO3C017855.2 Cucumis melo HOM05D003498 ORTHO05D004191 6.8e-33 144.1 94 70.2
Mapoly0001s0438 Marchantia polymorpha HOM05D003498 ORTHO05D004191 1.5e-32 142.9 92 70.7
SMO201G0123 Selaginella moellendorffii HOM05D003498 ORTHO05D004191 2.0e-32 142.5 99 67.7
Manes.06G007550 Manihot esculenta HOM05D003498 ORTHO05D004191 5.8e-32 141.0 92 70.7
TPR.G16146 Trifolium pratense HOM05D003498 ORTHO05D004191 1.4e-30 136.3 97 68.0
CsaV3_4G001780 Cucumis sativus L. HOM05D003498 ORTHO05D004191 2.4e-30 135.6 100 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2546 Anthoceros agrestis HOM05D003498 ORTHO05D004191 1.6e-29 132.9 93 63.4
CSS0025632 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 6.0e-29 131.0 93 67.7
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 7.8e-29 130.6 94 68.1
CBR_g30299 Chara braunii HOM05D003498 ORTHO05D004191 5.6e-27 124.4 96 62.5
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 7.3e-27 124.0 94 63.8
Gohir.A07G076000 Gossypium hirsutum HOM05D003498 ORTHO05D004191 1.2e-26 123.2 71 77.5
CBR_g50851 Chara braunii HOM05D003498 ORTHO05D004191 2.8e-26 122.1 98 60.2
Gohir.D07G080500 Gossypium hirsutum HOM05D003498 ORTHO05D004191 3.6e-26 121.7 67 83.6
PSO384G2342 Papaver somniferum HOM05D003498 ORTHO05D004191 1.1e-25 120.2 146 45.9
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 1.1e-25 120.2 70 75.7
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 1.2e-24 116.7 99 59.6
MCO11G310 Micromonas commoda HOM05D003498 ORTHO05D004191 5.8e-24 114.4 97 56.7
Lalb_Chr01g0016871 Lupinus albus HOM05D003498 ORTHO05D004191 7.6e-24 114.0 108 56.5
Cre03.g190750 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 2.2e-23 112.5 88 60.2
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 8.4e-23 110.5 93 61.3
PRCOL_00002439 Prasinoderma coloniale HOM05D003498 ORTHO05D004191 4.2e-22 108.2 93 52.7
CSS0002226 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 4.6e-21 104.8 58 82.8
CSS0030890 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 4.6e-21 104.8 93 58.1
Haze_21315 Corylus avellana HOM05D003498 ORTHO05D004191 1.3e-20 103.2 58 82.8
Haze_27494 Corylus avellana HOM05D003498 ORTHO05D004191 3.9e-20 101.7 90 54.4
AUR62003275 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.1e-20 101.3 58 75.9
AUR62042988 Chenopodium quinoa HOM05D003498 ORTHO05D004191 5.1e-20 101.3 58 75.9
Atru.chr6.2501 Acer truncatum HOM05D003498 ORTHO05D004191 4.3e-19 98.2 58 75.9
AUR62033715 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.3e-19 97.4 58 72.4
Cre03.g190800 Chlamydomonas reinhardtii HOM05D003498 ORTHO05D004191 9.6e-19 97.1 88 54.5
Pp3c13_20320 Physcomitrium patens HOM05D003498 ORTHO05D004191 4.8e-18 94.7 58 72.4
SMO327G0007 Selaginella moellendorffii HOM05D003498 ORTHO05D379411 4.8e-18 94.7 59 72.9
Dinv27202 Davidia involucrata HOM05D003498 ORTHO05D004191 1.8e-17 92.8 56 73.2
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 6.9e-17 90.9 78 61.5
AUR62040722 Chenopodium quinoa HOM05D003498 ORTHO05D004191 1.5e-16 89.7 57 66.7
BcaC05g26822 Brassica carinata HOM05D003498 ORTHO05D004191 2.0e-16 89.4 55 76.4
Haze_25285 Corylus avellana HOM05D003498 ORTHO05D004191 2.0e-16 89.4 78 59.0
Atru.chr9.861 Acer truncatum HOM05D003498 ORTHO05D037953 7.6e-16 87.4 55 70.9
Hma1.2p1_1219F.1_g267800 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 6.4e-15 84.3 51 68.6
Atru.chr9.862 Acer truncatum HOM05D003498 ORTHO05D004191 3.5e-13 78.6 83 56.6
Cfa023828 Carpinus fangiana HOM05D003498 ORTHO05D004191 1.0e-12 77.0 89 41.6
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 2.3e-12 75.9 48 77.1
Ciclev10026903m.g Citrus clementina HOM05D003498 ORTHO05D037953 2.5e-11 72.4 56 60.7
HanXRQChr14g0428161 Helianthus annuus HOM05D003498 ORTHO05D004191 5.6e-11 71.2 38 86.8
SMO203G0194 Selaginella moellendorffii HOM05D003498 ORTHO05D378116 8.1e-10 67.4 35 82.9
BolC3t13820H Brassica oleracea HOM05D000021 ORTHO05D000010 5.3e-09 64.7 73 45.2
TPR.G5710 Trifolium pratense HOM05D003498 ORTHO05D004191 1.5e-08 63.2 35 80.0
QL93p1517_0005 Quercus lobata HOM05D003498 ORTHO05D004191 5.8e-08 61.2 42 64.3
C05p26950 Brassica napus HOM05D003498 ORTHO05D004191 7.6e-08 60.8 34 76.5
BcaB01g04580 Brassica carinata HOM05D000021 ORTHO05D000010 9.9e-08 60.5 49 53.1
AUR62044540 Chenopodium quinoa HOM05D003498 ORTHO05D004191 4.9e-07 58.2 45 55.6
QL02p008646 Quercus lobata HOM05D003498 ORTHO05D004191 6.4e-07 57.8 46 65.2
Dinv41748 Davidia involucrata HOM05D003498 ORTHO05D184261 1.9e-06 56.2 39 61.5


User provided reference genes

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