Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.5e-96 356.3 189 100.0
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 3.6e-95 351.7 189 98.9
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 4.7e-95 351.3 189 98.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.1e-95 350.9 189 98.9
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.0e-94 350.1 189 98.4
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 3.2e-88 328.6 178 97.8
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 4.6e-58 228.4 150 83.3
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.1e-40 170.6 122 75.4
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 8.7e-25 117.9 142 47.9
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 4.3e-16 89.0 143 39.2
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.3e-15 87.4 123 43.9
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.3e-15 87.4 142 40.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.6e-15 87.0 123 43.9
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 2.1e-15 86.7 142 40.1
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.1e-15 86.7 142 40.1
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 3.7e-15 85.9 123 41.5
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.1e-14 84.3 142 40.1
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.4e-14 84.0 142 38.0
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.8e-14 83.6 142 40.1
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.8e-14 83.6 142 38.0
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 2.4e-14 83.2 142 37.3
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 3.1e-14 82.8 121 41.3
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.1e-14 82.8 142 38.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.1e-14 82.8 142 38.0
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 3.1e-14 82.8 142 38.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.1e-14 82.8 142 38.7
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 4.0e-14 82.4 142 37.3
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 4.0e-14 82.4 142 38.0
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 4.0e-14 82.4 146 37.0
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.0e-14 82.4 142 37.3
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 4.0e-14 82.4 142 39.4
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 5.3e-14 82.0 142 37.3
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 5.3e-14 82.0 140 37.9
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 5.3e-14 82.0 142 38.0
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 5.3e-14 82.0 142 35.9
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 5.3e-14 82.0 142 38.7
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 9.0e-14 81.3 140 36.4
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.2e-13 80.9 142 37.3
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.2e-13 80.9 142 37.3
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.2e-13 80.9 142 37.3
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.2e-13 80.9 142 37.3
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.2e-13 80.9 142 38.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.2e-13 80.9 140 38.6
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.2e-13 80.9 142 37.3
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.5e-13 80.5 142 38.7
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.5e-13 80.5 142 38.7
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 2.0e-13 80.1 142 37.3
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 2.6e-13 79.7 123 39.0
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.6e-13 79.7 123 39.0
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.6e-13 79.7 142 36.6
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.6e-13 79.7 142 37.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 2.6e-13 79.7 142 36.6
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.4e-13 79.3 121 39.7
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 3.4e-13 79.3 121 39.7
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.4e-13 79.3 146 35.6
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.4e-13 79.3 146 35.6
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 3.4e-13 79.3 142 36.6
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.5e-13 79.0 142 35.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 4.5e-13 79.0 142 36.6
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 4.5e-13 79.0 142 35.2
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 4.5e-13 79.0 142 35.2
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.8e-13 78.6 142 36.6
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.7e-12 77.0 142 35.9
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.7e-12 77.0 141 35.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.7e-12 77.0 142 35.2
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.7e-12 77.0 142 35.2
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.2e-12 76.6 141 34.0
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.9e-12 76.3 142 37.3
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.8e-12 75.9 142 35.2
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.8e-12 75.9 142 35.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 3.8e-12 75.9 142 35.9
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 4.9e-12 75.5 142 35.9
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.9e-12 75.5 142 35.2
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 4.9e-12 75.5 142 37.3
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 4.9e-12 75.5 142 33.8
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 4.9e-12 75.5 142 37.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.9e-12 75.5 141 34.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 6.5e-12 75.1 141 34.0
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 6.5e-12 75.1 141 34.0
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.5e-12 75.1 141 34.0
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 6.5e-12 75.1 141 34.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 6.5e-12 75.1 141 34.0
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 8.4e-12 74.7 141 33.3
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.1e-11 74.3 121 37.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.1e-11 74.3 142 33.8
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.1e-11 74.3 142 34.5
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-11 74.3 142 35.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.9e-11 73.6 142 35.2
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.9e-11 73.6 142 34.5
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.5e-11 73.2 142 33.8
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.5e-11 73.2 142 33.8
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.5e-11 73.2 142 33.8
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.2e-11 72.8 122 38.5
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 3.2e-11 72.8 121 37.2
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 3.2e-11 72.8 141 34.0
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 4.2e-11 72.4 142 33.8
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.2e-11 72.4 142 33.8
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.2e-10 70.9 142 33.8
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.2e-10 70.9 142 36.6
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.6e-10 70.5 142 32.4
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.6e-10 70.5 142 33.1
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 2.1e-10 70.1 142 34.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 4.6e-10 68.9 142 33.8
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 6.1e-10 68.6 142 31.7
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 7.9e-10 68.2 140 34.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 7.9e-10 68.2 140 34.3
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.3e-09 67.4 94 43.6
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.8e-09 67.0 119 34.5
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.3e-09 66.6 142 32.4
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 3.0e-09 66.2 136 33.1
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-08 64.3 75 50.7
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-08 63.2 75 49.3
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 9.7e-08 61.2 103 35.9
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.8e-06 57.0 108 32.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.3e-06 55.5 74 44.6


User provided reference genes

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