Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb241480 Zea mays HOM05D008270 ORTHO05D010684 1.7e-69 265.8 126 100.0
Zm00001eb344660 Zea mays HOM05D008270 ORTHO05D010684 7.2e-68 260.4 126 98.4
Zm00001eb387990 Zea mays HOM05D008270 ORTHO05D010684 1.2e-67 259.6 126 97.6
Zm00001eb282160 Zea mays HOM05D008270 ORTHO05D010684 1.6e-67 259.2 126 97.6
Zm00001eb096200 Zea mays HOM05D008270 ORTHO05D010684 3.6e-67 258.1 126 97.6
Zm00001eb103270 Zea mays HOM05D008270 ORTHO05D010684 1.4e-66 256.1 126 96.8
Zm00001eb158440 Zea mays HOM05D008270 ORTHO05D010684 2.3e-66 255.4 126 96.0
Zm00001eb207180 Zea mays HOM05D008270 ORTHO05D010684 2.3e-66 255.4 126 96.0
Zm00001eb186030 Zea mays HOM05D008270 ORTHO05D010684 8.6e-61 236.9 126 89.7
Zm00001eb330950 Zea mays HOM05D008270 ORTHO05D010684 1.5e-41 172.9 85 92.9
Zm00001eb024520 Zea mays HOM05D008270 ORTHO05D010684 8.4e-32 140.6 70 90.0
Zm00001eb073700 Zea mays HOM05D008270 ORTHO05D010684 4.7e-27 124.8 57 98.2
Zm00001eb295280 Zea mays HOM05D008270 ORTHO05D010684 2.6e-25 119.0 60 95.0
Zm00001eb084210 Zea mays HOM05D008270 ORTHO05D010684 9.9e-25 117.1 60 93.3
Zm00001eb395870 Zea mays HOM05D008270 ORTHO05D010684 3.2e-23 112.1 50 100.0
Zm00001eb059320 Zea mays HOM05D009386 ORTHO05D011419 1.4e-18 96.7 125 41.6
Zm00001eb272060 Zea mays HOM05D009386 ORTHO05D011419 1.8e-18 96.3 125 41.6
Zm00001eb442850 Zea mays HOM05D009386 ORTHO05D011419 1.8e-18 96.3 125 41.6
Zm00001eb162840 Zea mays HOM05D009386 ORTHO05D011419 3.4e-17 92.0 108 43.5
Zm00001eb021110 Zea mays HOM05D009386 ORTHO05D011419 9.9e-17 90.5 112 43.8
Zm00001eb188020 Zea mays HOM05D009386 ORTHO05D011419 1.4e-15 86.7 107 43.0
Zm00001eb203740 Zea mays HOM05D008270 ORTHO05D010684 3.5e-14 82.0 43 90.7
Zm00001eb178860 Zea mays HOM05D008270 ORTHO05D010684 7.9e-14 80.9 56 69.6
Zm00001eb021580 Zea mays HOM05D008270 ORTHO05D010684 1.3e-13 80.1 43 86.0
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.3e-13 80.1 97 43.3
Zm00001eb223790 Zea mays HOM05D008270 ORTHO05D010684 1.7e-13 79.7 41 92.7
Zm00001eb324040 Zea mays HOM05D009386 ORTHO05D011419 2.3e-13 79.3 125 34.4
Zm00001eb007160 Zea mays HOM05D008270 ORTHO05D010684 3.0e-13 79.0 48 85.4
Zm00001eb286500 Zea mays HOM05D008270 ORTHO05D010684 3.0e-13 79.0 41 90.2
Zm00001eb321500 Zea mays HOM05D008270 ORTHO05D010684 3.0e-13 79.0 41 90.2
Zm00001eb427350 Zea mays HOM05D009386 ORTHO05D011419 5.1e-13 78.2 125 33.6
Zm00001eb394900 Zea mays HOM05D008270 ORTHO05D010684 8.7e-13 77.4 41 90.2
Os10g0388600 Oryza sativa ssp. japonica HOM05D008270 ORTHO05D010684 7.4e-12 74.3 126 34.1
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 1.3e-11 73.6 108 35.2
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 2.1e-11 72.8 43 81.4
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 8.1e-11 70.9 109 32.1
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 8.1e-11 70.9 109 32.1
SMO115G0256 Selaginella moellendorffii HOM05D002639 ORTHO05D003094 2.6e-09 65.9 121 33.1
HPP92_013719 Vanilla planifolia HOM05D002639 ORTHO05D003094 9.9e-09 63.9 121 30.6
Cc03_g01820 Coffea canephora HOM05D002639 ORTHO05D003094 1.7e-08 63.2 116 31.9
Duzib151G0387 Durio zibethinus HOM05D002639 ORTHO05D003094 1.7e-08 63.2 115 32.2
Gohir.D10G170600 Gossypium hirsutum HOM05D002639 ORTHO05D003094 1.7e-08 63.2 121 30.6
Gorai.011G190600 Gossypium raimondii HOM05D002639 ORTHO05D003094 2.2e-08 62.8 121 30.6
Dinv29750 Davidia involucrata HOM05D002639 ORTHO05D003094 2.9e-08 62.4 116 31.0
THA.LOC104820271 Tarenaya hassleriana HOM05D002639 ORTHO05D003094 2.9e-08 62.4 118 32.2
vmacro08160 Vaccinium macrocarpon HOM05D002639 ORTHO05D003094 2.9e-08 62.4 122 32.0
CAN.G484.35 Capsicum annuum HOM05D002639 ORTHO05D003094 3.8e-08 62.0 115 32.2
Haze_01193 Corylus avellana HOM05D002639 ORTHO05D003094 3.8e-08 62.0 116 31.0
PGR031G1085 Punica granatum HOM05D002639 ORTHO05D003094 3.8e-08 62.0 118 30.5
Nitab4.5_0000960g0070 Nicotiana tabacum HOM05D002639 ORTHO05D003094 4.9e-08 61.6 115 33.0
Duzib212G0172 Durio zibethinus HOM05D002639 ORTHO05D003094 6.4e-08 61.2 115 30.4
ECA240G4557 Erigeron canadensis HOM05D002639 ORTHO05D003094 6.4e-08 61.2 116 31.0
Actinidia00017 Actinidia chinensis HOM05D002639 ORTHO05D003094 8.4e-08 60.8 121 30.6
Gohir.A10G164400 Gossypium hirsutum HOM05D002639 ORTHO05D003094 8.4e-08 60.8 115 31.3
Hma1.2p1_1185F.1_g265060 Hydrangea macrophylla HOM05D002639 ORTHO05D003094 8.4e-08 60.8 116 31.0
Nitab4.5_0008499g0020 Nicotiana tabacum HOM05D002639 ORTHO05D003094 8.4e-08 60.8 116 31.9
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 8.4e-08 60.8 116 30.2
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 8.4e-08 60.8 116 30.2
ClCG06G005110 Citrullus lanatus HOM05D002639 ORTHO05D003094 1.1e-07 60.5 123 34.1
MD13G1167800 Malus domestica HOM05D002639 ORTHO05D003094 1.1e-07 60.5 123 35.8
Rhsim04G0223300 Rhododendron simsii HOM05D002639 ORTHO05D003094 1.1e-07 60.5 116 29.3
Rhsim09G0006900 Rhododendron simsii HOM05D002639 ORTHO05D003094 1.1e-07 60.5 116 29.3
RcHm_v2.0_Chr4g0422391 Rosa chinensis HOM05D002639 ORTHO05D003094 1.1e-07 60.5 116 31.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.1e-07 60.5 53 49.1
Actinidia40277 Actinidia chinensis HOM05D002639 ORTHO05D003094 1.4e-07 60.1 116 29.3
BcaC06g33440 Brassica carinata HOM05D002639 ORTHO05D003094 1.4e-07 60.1 116 31.9
BolC7t45274H Brassica oleracea HOM05D002639 ORTHO05D003094 1.4e-07 60.1 116 31.9
CiPaw.01G147900 Carya illinoinensis HOM05D002639 ORTHO05D003094 1.4e-07 60.1 115 32.2
Sed0005683 Sechium edule HOM05D002639 ORTHO05D003094 1.4e-07 60.1 124 31.5
TWI53G0486 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 1.4e-07 60.1 116 31.0
BcaB04g18335 Brassica carinata HOM05D002639 ORTHO05D003094 1.9e-07 59.7 116 31.9
CAN.G129.28 Capsicum annuum HOM05D002639 ORTHO05D003094 1.9e-07 59.7 124 30.6
AUR62040372 Chenopodium quinoa HOM05D002639 ORTHO05D003094 1.9e-07 59.7 121 31.4
Ca_01932_v3 Cicer arietinum L. HOM05D002639 ORTHO05D003094 1.9e-07 59.7 115 32.2
MELO3C021328.2 Cucumis melo HOM05D002639 ORTHO05D003094 1.9e-07 59.7 123 34.1
CsaV3_6G022290 Cucumis sativus L. HOM05D002639 ORTHO05D003094 1.9e-07 59.7 123 34.1
DCAR_030525 Daucus carota HOM05D002639 ORTHO05D003094 1.9e-07 59.7 115 31.3
Migut.G00153 Erythranthe guttata HOM05D002639 ORTHO05D003094 1.9e-07 59.7 121 34.7
Medtr2g436660 Medicago truncatula HOM05D002639 ORTHO05D003094 1.9e-07 59.7 115 31.3
Sc13g0003440 Simmondsia chinensis HOM05D002639 ORTHO05D003094 1.9e-07 59.7 121 29.8
Actinidia14298 Actinidia chinensis HOM05D002639 ORTHO05D003094 2.4e-07 59.3 121 29.8
AT4G15880 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 2.4e-07 59.3 116 31.9
EL10Ac3g06606 Beta vulgaris HOM05D002639 ORTHO05D003094 2.4e-07 59.3 116 31.0
A03p49390 Brassica napus HOM05D002639 ORTHO05D003094 2.4e-07 59.3 116 31.9
C07p47470 Brassica napus HOM05D002639 ORTHO05D003094 2.4e-07 59.3 122 33.6
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 2.4e-07 59.3 116 31.9
CSS0011099 Camellia sinensis var. sinensis HOM05D002639 ORTHO05D003094 2.4e-07 59.3 115 30.4
HanXRQChr03g0081551 Helianthus annuus HOM05D002639 ORTHO05D003094 2.4e-07 59.3 116 30.2
PSO210G1023 Papaver somniferum HOM05D002639 ORTHO05D003094 2.4e-07 59.3 126 29.4
Zm00001eb398720 Zea mays HOM05D009386 ORTHO05D011419 2.4e-07 59.3 53 47.2
BcaC06g32970 Brassica carinata HOM05D002639 ORTHO05D003094 3.2e-07 58.9 116 31.9
BcaC07g37936 Brassica carinata HOM05D002639 ORTHO05D003094 3.2e-07 58.9 116 31.9
Ciclev10004735m.g Citrus clementina HOM05D002639 ORTHO05D003094 3.2e-07 58.9 132 33.3
HanXRQChr06g0173971 Helianthus annuus HOM05D002639 ORTHO05D003094 3.2e-07 58.9 116 30.2
HanXRQChr17g0538731 Helianthus annuus HOM05D002639 ORTHO05D003094 3.2e-07 58.9 116 30.2
Lsat_1_v5_gn_5_62580 Lactuca sativa HOM05D002639 ORTHO05D003094 3.2e-07 58.9 122 33.6
Sed0000099 Sechium edule HOM05D002639 ORTHO05D003094 3.2e-07 58.9 121 32.2
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.2e-07 58.9 53 47.2
AL7G39400 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 4.2e-07 58.5 116 31.0
A08p12010 Brassica napus HOM05D002639 ORTHO05D003094 4.2e-07 58.5 115 31.3
AUR62041504 Chenopodium quinoa HOM05D002639 ORTHO05D003094 4.2e-07 58.5 121 31.4
Eucgr.B01592 Eucalyptus grandis HOM05D002639 ORTHO05D003094 4.2e-07 58.5 114 31.6
Sp7g14290 Schrenkiella parvula HOM05D002639 ORTHO05D003094 4.2e-07 58.5 116 31.0
Hund20545 Selenicereus undatus HOM05D002639 ORTHO05D003094 4.2e-07 58.5 119 31.1
PGSC0003DMG400004634 Solanum tuberosum HOM05D002639 ORTHO05D003094 4.2e-07 58.5 121 33.9
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 4.2e-07 58.5 53 47.2
Zm00001eb318680 Zea mays HOM05D009386 ORTHO05D011419 4.2e-07 58.5 105 30.5
Carub.0007s2578 Capsella rubella HOM05D002639 ORTHO05D003094 5.5e-07 58.2 116 30.2
Cpa.g.sc16.178 Carica papaya HOM05D002639 ORTHO05D003094 5.5e-07 58.2 114 31.6
ECA246G1134 Erigeron canadensis HOM05D002639 ORTHO05D003094 5.5e-07 58.2 116 30.2
Mapoly0071s0122 Marchantia polymorpha HOM05D002639 ORTHO05D003094 5.5e-07 58.2 115 30.4
TWI73G0200 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 5.5e-07 58.2 114 31.6
Zm00001eb144700 Zea mays HOM05D009386 ORTHO05D011419 5.5e-07 58.2 63 42.9
CSS0003276 Camellia sinensis var. sinensis HOM05D002639 ORTHO05D003094 7.1e-07 57.8 117 32.5
CiPaw.02G082600 Carya illinoinensis HOM05D002639 ORTHO05D003094 7.1e-07 57.8 123 35.0
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 7.1e-07 57.8 117 31.6
Lj6g0011426 Lotus japonicus HOM05D002639 ORTHO05D003094 7.1e-07 57.8 126 33.3
Oeu035678.1 Olea europaea HOM05D002639 ORTHO05D003094 7.1e-07 57.8 121 32.2
Potri.008G221500 Populus trichocarpa HOM05D002639 ORTHO05D003094 7.1e-07 57.8 115 29.6
Prupe.1G135200 Prunus persica HOM05D002639 ORTHO05D003094 7.1e-07 57.8 115 30.4
QL06p009035 Quercus lobata HOM05D002639 ORTHO05D003094 7.1e-07 57.8 123 35.0
GSVIVG01017729001 Vitis vinifera HOM05D002639 ORTHO05D003094 7.1e-07 57.8 115 30.4
Zm00001eb290820 Zea mays HOM05D009386 ORTHO05D011419 7.1e-07 57.8 91 38.5
Aa31LG10G6270 Aethionema arabicum HOM05D002639 ORTHO05D005651 9.3e-07 57.4 122 32.8
arahy.Tifrunner.gnm1.ann1.7RK78I Arachis hypogaea HOM05D002639 ORTHO05D003094 9.3e-07 57.4 116 31.9
COL.COLO4_13861 Corchorus olitorius HOM05D002639 ORTHO05D003094 9.3e-07 57.4 115 28.7
Gohir.A01G032900 Gossypium hirsutum HOM05D002639 ORTHO05D003094 9.3e-07 57.4 116 28.4
Gorai.002G028400 Gossypium raimondii HOM05D002639 ORTHO05D003094 9.3e-07 57.4 116 28.4
Psat1g154240 Pisum sativum HOM05D002639 ORTHO05D003094 9.3e-07 57.4 115 30.4
Ah.04g153570 Amaranthus hybridus HOM05D002639 ORTHO05D003094 1.2e-06 57.0 116 29.3
Lsat_1_v5_gn_3_24681 Lactuca sativa HOM05D002639 ORTHO05D003094 1.2e-06 57.0 116 31.0
MD16G1167200 Malus domestica HOM05D002639 ORTHO05D003094 1.2e-06 57.0 121 33.1
Os01g0355900 Oryza sativa ssp. japonica HOM05D002639 ORTHO05D003094 1.2e-06 57.0 124 31.5
Solyc12g099530.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 1.2e-06 57.0 121 33.1
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 1.2e-06 57.0 120 30.0
Zm00001eb170840 Zea mays HOM05D009386 ORTHO05D011419 1.2e-06 57.0 53 47.2
Zm00001eb242860 Zea mays HOM05D009386 ORTHO05D011419 1.2e-06 57.0 53 47.2
Zm00001eb324120 Zea mays HOM05D000238 ORTHO05D011419 1.2e-06 57.0 53 47.2
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.2e-06 57.0 101 33.7
Pp3c22_12640 Physcomitrium patens HOM05D002639 ORTHO05D003094 1.6e-06 56.6 115 30.4
TAR636G2312 Trochodendron aralioides HOM05D002639 ORTHO05D003094 1.6e-06 56.6 115 29.6
Zm00001eb367360 Zea mays HOM05D002702 ORTHO05D003416 1.6e-06 56.6 53 47.2
AagrBONN_evm.TU.Sc2ySwM_340.204 Anthoceros agrestis HOM05D002639 ORTHO05D003094 2.1e-06 56.2 115 28.7
arahy.Tifrunner.gnm1.ann1.L0QAVJ Arachis hypogaea HOM05D002639 ORTHO05D003094 2.1e-06 56.2 120 31.7
MSTRG.10098 Avicennia marina HOM05D002639 ORTHO05D003094 2.1e-06 56.2 121 32.2
Thhalv10025061m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 2.1e-06 56.2 115 30.4
Lj3A817T82 Lonicera japonica HOM05D002639 ORTHO05D003094 2.1e-06 56.2 121 30.6
Nitab4.5_0000570g0140 Nicotiana tabacum HOM05D002639 ORTHO05D003094 2.1e-06 56.2 121 33.1
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 2.1e-06 56.2 53 45.3
BolC8t48321H Brassica oleracea HOM05D002639 ORTHO05D003094 2.7e-06 55.8 115 29.6
CDE02G3750 Ceratophyllum demersum HOM05D002639 ORTHO05D003094 2.7e-06 55.8 116 30.2
Sabra10G0008800 Salix brachista HOM05D002639 ORTHO05D003094 2.7e-06 55.8 117 29.9
Sopen12g034210 Solanum pennellii HOM05D002639 ORTHO05D003094 2.7e-06 55.8 121 32.2
SGA_v2.0_scaffold67G22629 Striga asiatica HOM05D002639 ORTHO05D003094 2.7e-06 55.8 115 29.6
Zm00001eb024010 Zea mays HOM05D009386 ORTHO05D011419 2.7e-06 55.8 53 47.2
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 2.7e-06 55.8 53 45.3
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 2.7e-06 55.8 53 45.3
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 2.7e-06 55.8 53 47.2
Aa31LG8G3730 Aethionema arabicum HOM05D002639 ORTHO05D003094 3.5e-06 55.5 122 32.0
Zm00001eb297690 Zea mays HOM05D009386 ORTHO05D011419 3.5e-06 55.5 53 47.2
Ah.13g074620 Amaranthus hybridus HOM05D002639 ORTHO05D003094 4.6e-06 55.1 116 28.4
ATR0796G180 Amborella trichopoda HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 29.6
FvH4_4g18241 Fragaria vesca HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 30.4
FAN07G0222 Fragaria x ananassa HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 30.4
FAN12G2797 Fragaria x ananassa HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 30.4
FAN12G3880 Fragaria x ananassa HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 30.4
FAN17G1452 Fragaria x ananassa HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 30.4
SEGI_08688 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 4.6e-06 55.1 115 29.6
CANSAT78G0264 Cannabis sativa HOM05D002639 ORTHO05D003094 7.9e-06 54.3 121 33.9
Zm00001eb131540 Zea mays HOM05D002639 ORTHO05D003094 7.9e-06 54.3 122 31.1


User provided reference genes

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