Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb237030 Zea mays HOM05D004195 ORTHO05D005309 2.9e-87 325.1 154 100.0
Zm00001eb215830 Zea mays HOM05D004195 ORTHO05D005309 3.9e-84 314.7 151 98.0
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 6.3e-82 307.4 151 96.0
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 1.1e-81 306.6 151 94.0
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 1.4e-73 279.6 151 86.1
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 2.4e-73 278.9 151 85.4
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 3.1e-73 278.5 151 86.8
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 7.0e-73 277.3 151 84.8
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 7.0e-73 277.3 151 85.4
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 9.1e-73 276.9 151 85.4
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 9.1e-73 276.9 151 84.8
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 9.1e-73 276.9 151 84.8
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.2e-72 276.6 151 85.4
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.2e-72 276.6 151 83.4
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 2.0e-72 275.8 151 84.8
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.1
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.8
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.8
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.8
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.8
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.8
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 3.5e-72 275.0 151 84.1
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 4.5e-72 274.6 151 85.4
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 4.5e-72 274.6 151 84.8
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 4.5e-72 274.6 151 85.4
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 5.9e-72 274.2 151 84.8
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 5.9e-72 274.2 151 86.1
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 7.7e-72 273.9 151 85.4
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 7.7e-72 273.9 151 84.1
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 1.0e-71 273.5 151 84.8
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.0e-71 273.5 151 83.4
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 1.3e-71 273.1 151 84.8
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 1.3e-71 273.1 151 84.8
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 1.3e-71 273.1 151 85.4
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 1.3e-71 273.1 151 85.4
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 1.3e-71 273.1 150 86.0
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 1.3e-71 273.1 151 84.8
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.3e-71 273.1 151 83.4
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 1.7e-71 272.7 151 84.1
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.7e-71 272.7 151 84.1
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 1.7e-71 272.7 151 84.8
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 2.2e-71 272.3 151 84.1
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 2.9e-71 271.9 151 82.8
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 2.9e-71 271.9 151 84.8
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 3.8e-71 271.6 151 85.4
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 3.8e-71 271.6 151 84.1
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 3.8e-71 271.6 151 84.8
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 3.8e-71 271.6 151 84.8
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.1
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.8
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.8
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.8
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.8
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 83.4
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.1
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 5.0e-71 271.2 151 84.1
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 6.5e-71 270.8 151 84.1
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 6.5e-71 270.8 151 83.4
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 6.5e-71 270.8 151 82.8
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 8.5e-71 270.4 151 84.1
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 1.1e-70 270.0 151 82.1
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 1.1e-70 270.0 151 83.4
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 1.1e-70 270.0 151 81.5
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 1.5e-70 269.6 151 83.4
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 1.9e-70 269.2 151 84.1
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 1.9e-70 269.2 151 84.1
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 1.9e-70 269.2 151 84.1
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 2.5e-70 268.9 151 84.1
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 3.2e-70 268.5 151 83.4
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 3.2e-70 268.5 151 84.8
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 3.2e-70 268.5 151 83.4
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 4.2e-70 268.1 151 84.1
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 4.2e-70 268.1 151 84.1
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 5.5e-70 267.7 151 83.4
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 5.5e-70 267.7 151 82.8
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 5.5e-70 267.7 151 84.8
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 7.2e-70 267.3 151 83.4
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 7.2e-70 267.3 151 83.4
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 7.2e-70 267.3 151 82.8
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 7.2e-70 267.3 151 82.8
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 7.2e-70 267.3 151 82.8
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 9.4e-70 266.9 151 83.4
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 9.4e-70 266.9 151 83.4
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 9.4e-70 266.9 151 82.8
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 1.2e-69 266.5 151 82.1
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 1.2e-69 266.5 151 82.8
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 1.2e-69 266.5 151 84.1
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 1.2e-69 266.5 151 83.4
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 1.2e-69 266.5 151 82.8
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 1.2e-69 266.5 151 82.8
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 1.6e-69 266.2 151 81.5
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 2.1e-69 265.8 151 82.8
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 2.1e-69 265.8 151 81.5
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 2.7e-69 265.4 151 82.1
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 2.7e-69 265.4 151 82.8
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 2.7e-69 265.4 151 82.1
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 3.6e-69 265.0 151 83.4
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 3.6e-69 265.0 127 99.2
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 4.7e-69 264.6 151 82.8
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 4.7e-69 264.6 151 81.5
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 4.7e-69 264.6 151 82.1
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 6.1e-69 264.2 151 81.5
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 8.0e-69 263.8 151 82.1
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.0e-68 263.5 151 81.5
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.0e-68 263.5 151 82.1
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.0e-68 263.5 151 82.8
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.0e-68 263.5 151 83.4
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.4e-68 263.1 151 84.1
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 1.8e-68 262.7 151 82.1
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 3.0e-68 261.9 151 81.5
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 4.0e-68 261.5 151 81.5
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 5.2e-68 261.2 151 82.8
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 8.8e-68 260.4 151 80.1
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 1.5e-67 259.6 144 85.4
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 4.4e-67 258.1 151 81.5
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 5.7e-67 257.7 151 80.1
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 5.7e-67 257.7 151 78.1
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 8.3e-66 253.8 151 80.1
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 2.4e-65 252.3 151 79.5
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 3.5e-64 248.4 147 80.3
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 2.9e-63 245.4 150 80.0
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.5e-62 243.0 152 72.4
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 5.5e-62 241.1 151 73.5
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 6.8e-60 234.2 151 70.9
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 1.2e-59 233.4 151 72.8
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.4e-59 231.9 157 73.2
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 1.0e-55 220.3 151 73.5
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 1.0e-55 220.3 150 66.0
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 1.7e-55 219.5 151 66.9
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.1e-54 216.9 127 79.5
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 3.3e-54 215.3 120 85.0
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 5.8e-51 204.5 135 74.1
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 2.9e-50 202.2 154 63.6
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.4e-49 199.9 138 70.3
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.2e-37 160.2 118 68.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.4e-36 156.8 85 87.1
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 1.0e-31 140.6 82 80.5
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 2.4e-28 129.4 113 61.1
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.4e-27 125.2 114 58.8
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 4.4e-27 125.2 82 74.4
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 3.8e-26 122.1 142 40.8
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 4.2e-25 118.6 66 80.3
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 6.2e-21 104.8 106 50.9
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 3.1e-20 102.4 81 60.5
vmacro11216 Vaccinium macrocarpon HOM05D004195 ORTHO05D050721 8.4e-18 94.4 90 53.3
Lsat_1_v5_gn_6_43121 Lactuca sativa HOM05D004195 ORTHO05D005309 4.2e-17 92.0 100 49.0
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 1.2e-16 90.5 151 35.8
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 5.3e-12 75.1 42 73.8
FAN26G1170 Fragaria x ananassa HOM05D004195 ORTHO05D035846 3.4e-11 72.4 34 91.2
Gohir.D07G155733 Gossypium hirsutum HOM05D004195 ORTHO05D217344 1.3e-10 70.5 42 78.6
RcHm_v2.0_Chr3g0470721 Rosa chinensis HOM05D004195 ORTHO05D050721 5.5e-09 65.1 39 79.5
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.0e-07 60.8 50 56.0
Lsat_1_v5_gn_3_55481 Lactuca sativa HOM05D002352 ORTHO05D011576 3.0e-07 59.3 32 75.0
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 4.3e-06 55.5 32 68.8


User provided reference genes

Program Settings