Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb231700 Zea mays HOM05D006597 ORTHO05D008141 2.9e-160 568.5 290 100.0
Os02g0135900 Oryza sativa ssp. japonica HOM05D006597 ORTHO05D008141 3.4e-105 385.6 274 74.1
Aqoxy3G00058 Aquilegia oxysepala HOM05D006597 ORTHO05D008141 5.5e-63 245.4 212 59.4
Eucgr.J01591 Eucalyptus grandis HOM05D006597 ORTHO05D008141 2.0e-60 236.9 208 59.1
MSTRG.15326 Avicennia marina HOM05D006597 ORTHO05D008141 2.2e-59 233.4 208 59.6
Manes.02G075700 Manihot esculenta HOM05D006597 ORTHO05D008141 3.7e-59 232.6 192 62.5
Thecc.04G117800 Theobroma cacao HOM05D006597 ORTHO05D008141 6.3e-59 231.9 207 58.9
Potri.017G125400 Populus trichocarpa HOM05D006597 ORTHO05D008141 8.3e-59 231.5 207 57.0
Cfa007827 Carpinus fangiana HOM05D006597 ORTHO05D008141 1.1e-58 231.1 207 57.5
CANSAT78G2380 Cannabis sativa HOM05D006597 ORTHO05D008141 1.4e-58 230.7 206 59.7
QL02p057713 Quercus lobata HOM05D006597 ORTHO05D008141 1.4e-58 230.7 217 58.1
Atru.chr1.1860 Acer truncatum HOM05D006597 ORTHO05D008141 1.8e-58 230.3 246 52.8
CiPaw.03G070700 Carya illinoinensis HOM05D006597 ORTHO05D008141 1.8e-58 230.3 218 56.4
vmacro23322 Vaccinium macrocarpon HOM05D006597 ORTHO05D008141 1.8e-58 230.3 207 58.5
AUR62038689 Chenopodium quinoa HOM05D006597 ORTHO05D008141 3.1e-58 229.6 242 52.9
Cc07_g08000 Coffea canephora HOM05D006597 ORTHO05D008141 3.1e-58 229.6 210 56.2
Migut.L00456 Erythranthe guttata HOM05D006597 ORTHO05D008141 3.1e-58 229.6 171 66.7
Prupe.7G052900 Prunus persica HOM05D006597 ORTHO05D008141 4.1e-58 229.2 207 59.9
GSVIVG01030813001 Vitis vinifera HOM05D006597 ORTHO05D008141 4.1e-58 229.2 207 57.5
SGA_v2.0_scaffold13G06385 Striga asiatica HOM05D006597 ORTHO05D008141 7.0e-58 228.4 165 67.3
Nn4g24232 Nelumbo nucifera HOM05D006597 ORTHO05D008141 9.2e-58 228.0 288 46.5
FAN06G5124 Fragaria x ananassa HOM05D006597 ORTHO05D008141 1.2e-57 227.6 207 57.0
MD07G1037100 Malus domestica HOM05D006597 ORTHO05D008141 1.2e-57 227.6 207 58.9
TAR374G1305 Trochodendron aralioides HOM05D006597 ORTHO05D008141 2.7e-57 226.5 208 58.2
AUR62018202 Chenopodium quinoa HOM05D006597 ORTHO05D008141 3.5e-57 226.1 245 52.2
FvH4_7g02800 Fragaria vesca HOM05D006597 ORTHO05D008141 5.9e-57 225.3 207 56.5
PGR042G1892 Punica granatum HOM05D006597 ORTHO05D008141 5.9e-57 225.3 213 57.7
Cpa.g.sc116.41 Carica papaya HOM05D006597 ORTHO05D008141 2.3e-56 223.4 206 57.8
Gohir.A07G078800 Gossypium hirsutum HOM05D006597 ORTHO05D008141 2.3e-56 223.4 190 61.6
FAN10G4184 Fragaria x ananassa HOM05D006597 ORTHO05D008141 2.9e-56 223.0 208 56.2
RcHm_v2.0_Chr1g0323231 Rosa chinensis HOM05D006597 ORTHO05D008141 2.9e-56 223.0 207 57.0
Gorai.001G089500 Gossypium raimondii HOM05D006597 ORTHO05D008141 3.8e-56 222.6 268 50.0
Glyma.18G039800 Glycine max HOM05D006597 ORTHO05D008141 5.0e-56 222.2 242 49.6
FAN03G1163 Fragaria x ananassa HOM05D006597 ORTHO05D008141 6.6e-56 221.9 208 56.2
Gohir.D07G083900 Gossypium hirsutum HOM05D006597 ORTHO05D008141 8.6e-56 221.5 216 56.9
THA.LOC104805614 Tarenaya hassleriana HOM05D006597 ORTHO05D008141 1.5e-55 220.7 244 51.6
Ciclev10012334m.g Citrus clementina HOM05D006597 ORTHO05D008141 4.3e-55 219.2 212 56.1
TPR.G14059 Trifolium pratense HOM05D006597 ORTHO05D008141 4.3e-55 219.2 191 59.7
CDE06G1942 Ceratophyllum demersum HOM05D006597 ORTHO05D008141 5.6e-55 218.8 206 57.8
Peaxi162Scf01159g00228 Petunia axillaris HOM05D006597 ORTHO05D008141 5.6e-55 218.8 160 65.0
Atru.chr1.1862 Acer truncatum HOM05D006597 ORTHO05D008141 9.5e-55 218.0 210 56.2
Medtr3g065930 Medicago truncatula HOM05D006597 ORTHO05D008141 9.5e-55 218.0 243 49.8
MD02G1289900 Malus domestica HOM05D006597 ORTHO05D008141 1.2e-54 217.6 190 61.1
arahy.Tifrunner.gnm1.ann1.VDX6J0 Arachis hypogaea HOM05D006597 ORTHO05D008141 2.1e-54 216.9 228 52.6
PSO017G3284 Papaver somniferum HOM05D006597 ORTHO05D008141 2.1e-54 216.9 207 55.6
SalBow7G2937 Salvia bowleyana HOM05D006597 ORTHO05D008141 2.1e-54 216.9 205 57.1
CAN.G1061.39 Capsicum annuum HOM05D006597 ORTHO05D008141 2.8e-54 216.5 207 55.1
Hma1.2p1_2448F.1_g322335 Hydrangea macrophylla HOM05D006597 ORTHO05D008141 2.8e-54 216.5 196 58.7
A04p12510 Brassica napus HOM05D006597 ORTHO05D008141 3.6e-54 216.1 181 58.6
Duzib133G0875 Durio zibethinus HOM05D006597 ORTHO05D008141 3.6e-54 216.1 207 56.0
Thhalv10027873m.g Eutrema salsugineum HOM05D006597 ORTHO05D008141 4.7e-54 215.7 180 62.2
Glyma.11G216800 Glycine max HOM05D006597 ORTHO05D008141 4.7e-54 215.7 242 48.8
BcaB06g27377 Brassica carinata HOM05D006597 ORTHO05D008141 8.0e-54 214.9 181 58.0
C04p46260 Brassica napus HOM05D006597 ORTHO05D008141 8.0e-54 214.9 181 58.0
Lj6g0007596 Lotus japonicus HOM05D006597 ORTHO05D008141 8.0e-54 214.9 210 54.3
Lalb_Chr18g0053401 Lupinus albus HOM05D006597 ORTHO05D008141 2.3e-53 213.4 160 64.4
TWI53G1911 Tripterygium wilfordii HOM05D006597 ORTHO05D008141 2.3e-53 213.4 189 59.3
PGSC0003DMG400030609 Solanum tuberosum HOM05D006597 ORTHO05D008141 3.0e-53 213.0 159 64.8
Haze_14242 Corylus avellana HOM05D006597 ORTHO05D008141 4.0e-53 212.6 249 49.4
Haze_14245 Corylus avellana HOM05D006597 ORTHO05D008141 4.0e-53 212.6 249 49.4
Nitab4.5_0011641g0010 Nicotiana tabacum HOM05D006597 ORTHO05D008141 5.2e-53 212.2 207 54.1
Psat5g122160 Pisum sativum HOM05D006597 ORTHO05D008141 5.2e-53 212.2 230 52.2
PSO478G0171 Papaver somniferum HOM05D006597 ORTHO05D008141 6.8e-53 211.8 222 52.3
BraA04t16911Z Brassica rapa HOM05D006597 ORTHO05D008141 1.2e-52 211.1 183 57.9
BolC4t26210H Brassica oleracea HOM05D006597 ORTHO05D008141 2.0e-52 210.3 183 57.4
Lj2A430G17 Lonicera japonica HOM05D006597 ORTHO05D008141 2.0e-52 210.3 157 63.7
Aa31LG9G16360 Aethionema arabicum HOM05D006597 ORTHO05D008141 2.6e-52 209.9 187 58.8
Sc14g0006400 Simmondsia chinensis HOM05D006597 ORTHO05D008141 3.4e-52 209.5 189 58.2
Solyc02g091530.4 Solanum lycopersicum HOM05D006597 ORTHO05D008141 3.4e-52 209.5 184 59.8
AL7G50500 Arabidopsis lyrata HOM05D006597 ORTHO05D008141 4.4e-52 209.1 180 60.6
Carub.0007s3596 Capsella rubella HOM05D006597 ORTHO05D008141 7.5e-52 208.4 180 60.6
CsaV3_3G021180 Cucumis sativus L. HOM05D006597 ORTHO05D008141 7.5e-52 208.4 195 55.9
MELO3C020256.2 Cucumis melo HOM05D006597 ORTHO05D008141 9.8e-52 208.0 206 54.4
Oeu050986.2 Olea europaea HOM05D006597 ORTHO05D008141 3.7e-51 206.1 248 47.2
Sabra17G0105600 Salix brachista HOM05D006597 ORTHO05D008141 6.4e-51 205.3 155 65.2
ECA232G4064 Erigeron canadensis HOM05D006597 ORTHO05D008141 1.8e-50 203.8 234 46.6
Rhsim10G0080600 Rhododendron simsii HOM05D006597 ORTHO05D008141 4.1e-50 202.6 173 59.5
CARHR262440 Cardamine hirsuta HOM05D006597 ORTHO05D008141 1.2e-49 201.1 178 57.9
ATR0681G203 Amborella trichopoda HOM05D006597 ORTHO05D008141 2.0e-49 200.3 156 59.6
DCAR_010755 Daucus carota HOM05D006597 ORTHO05D008141 2.0e-49 200.3 168 58.9
HanXRQChr09g0262181 Helianthus annuus HOM05D006597 ORTHO05D008141 3.9e-48 196.1 205 49.8
CDE04G0866 Ceratophyllum demersum HOM05D006597 ORTHO05D008141 8.6e-48 194.9 191 55.5
Sed0021212 Sechium edule HOM05D006597 ORTHO05D008141 1.5e-47 194.1 218 49.1
unitig_32.g11880 Utricularia gibba HOM05D006597 ORTHO05D008141 1.5e-47 194.1 219 48.9
Lsat_1_v5_gn_4_157700 Lactuca sativa HOM05D006597 ORTHO05D008141 7.3e-47 191.8 192 52.6
Ca_08157_v3 Cicer arietinum L. HOM05D006597 ORTHO05D008141 3.4e-44 183.0 127 68.5
COL.COLO4_00245 Corchorus olitorius HOM05D006597 ORTHO05D008141 5.8e-44 182.2 210 50.5
EL10Ac2g03151 Beta vulgaris HOM05D006597 ORTHO05D008141 1.7e-43 180.6 207 51.2
Nitab4.5_0004472g0030 Nicotiana tabacum HOM05D006597 ORTHO05D008141 3.7e-43 179.5 285 40.4
Dinv28218 Davidia involucrata HOM05D006597 ORTHO05D008141 1.6e-41 174.1 171 55.6
SEGI_39726 Sequoiadendron giganteum HOM05D006597 ORTHO05D008141 1.6e-41 174.1 193 49.7
FAN01G1326 Fragaria x ananassa HOM05D006597 ORTHO05D008141 2.3e-40 170.2 160 57.5
vmacro05527 Vaccinium macrocarpon HOM05D006597 ORTHO05D008141 5.0e-40 169.1 156 55.8
CSS0036940 Camellia sinensis var. sinensis HOM05D006597 ORTHO05D008141 6.6e-40 168.7 127 62.2
Hma1.2p1_2448F.1_g322330 Hydrangea macrophylla HOM05D006597 ORTHO05D008141 4.7e-38 162.5 158 57.0
Actinidia37172 Actinidia chinensis HOM05D006597 ORTHO05D008141 1.1e-37 161.4 159 56.0
Hund15551 Selenicereus undatus HOM05D006597 ORTHO05D008141 3.1e-37 159.8 126 63.5
Sopen02g036150 Solanum pennellii HOM05D006597 ORTHO05D008141 3.1e-37 159.8 119 63.0
vmacro22382 Vaccinium macrocarpon HOM05D006597 ORTHO05D008141 2.6e-36 156.8 165 54.5
arahy.Tifrunner.gnm1.ann1.B6CCGS Arachis hypogaea HOM05D006597 ORTHO05D008141 3.4e-36 156.4 231 43.7
ClCG05G011250 Citrullus lanatus HOM05D006597 ORTHO05D008141 7.5e-36 155.2 200 45.5
Mapoly0074s0064 Marchantia polymorpha HOM05D006597 ORTHO05D008141 1.9e-34 150.6 194 42.8
Phvul.001G230700 Phaseolus vulgaris HOM05D006597 ORTHO05D008141 5.4e-34 149.1 211 40.3
VMungo1383G0070 Vigna mungo HOM05D006597 ORTHO05D008141 3.0e-32 143.3 102 64.7
Pp3c14_11030 Physcomitrium patens HOM05D006597 ORTHO05D008141 1.5e-31 141.0 166 42.8
Pp3c1_28320 Physcomitrium patens HOM05D006597 ORTHO05D008141 2.9e-27 126.7 178 38.8
AT5G39790 Arabidopsis thaliana HOM05D006597 ORTHO05D008141 1.0e-24 118.2 112 60.7
HPP92_003922 Vanilla planifolia HOM05D006597 ORTHO05D008141 1.1e-18 98.2 141 44.7
VMungo1383G1559 Vigna mungo HOM05D006597 ORTHO05D008141 2.0e-12 77.4 140 35.0
RcHm_v2.0_Chr1g0322821 Rosa chinensis HOM05D006597 ORTHO05D008141 2.6e-12 77.0 81 55.6
SpUn1104_0010 Schrenkiella parvula HOM05D006597 ORTHO05D008141 2.9e-11 73.6 77 53.2
CBR_g3895 Chara braunii HOM05D006597 ORTHO05D008141 4.9e-11 72.8 87 54.0
MCO01G130 Micromonas commoda HOM05D006597 ORTHO05D008141 1.1e-10 71.6 208 29.3
Actinidia36373 Actinidia chinensis HOM05D006597 ORTHO05D008141 3.3e-07 60.1 83 45.8
SpUn0356_0010 Schrenkiella parvula HOM05D006597 ORTHO05D008141 3.3e-07 60.1 41 65.9
SpUn0419_0020 Schrenkiella parvula HOM05D006597 ORTHO05D008141 3.3e-07 60.1 41 65.9


User provided reference genes

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