Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.1e-75 286.6 142 100.0
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 7.1e-72 273.9 153 91.5
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.2e-65 252.3 151 84.1
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.7e-49 199.5 154 69.5
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 9.4e-48 193.7 154 67.5
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 7.9e-47 190.7 143 70.6
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 3.3e-45 185.3 155 67.7
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.3e-45 185.3 154 67.5
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.3e-45 185.3 154 67.5
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 4.4e-45 184.9 155 67.7
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.7e-44 183.0 154 64.9
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.7e-44 183.0 154 66.9
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.7e-44 181.8 139 69.1
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.8e-44 181.4 139 68.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 4.8e-44 181.4 155 66.5
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 6.3e-44 181.0 159 64.2
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 6.3e-44 181.0 133 70.7
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.4e-43 179.1 141 67.4
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 2.4e-43 179.1 153 64.1
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 3.1e-43 178.7 154 64.9
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.3e-43 177.9 147 68.0
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.3e-43 177.9 147 68.0
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 6.9e-43 177.6 158 63.9
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 9.1e-43 177.2 131 72.5
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 9.1e-43 177.2 153 63.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 2.0e-42 176.0 157 64.3
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.0e-42 176.0 138 68.8
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.0e-42 176.0 127 70.1
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.6e-42 175.6 127 70.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 4.5e-42 174.9 146 67.1
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 7.7e-42 174.1 158 64.6
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.0e-41 173.7 127 69.3
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.0e-41 173.7 153 65.4
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.3e-41 173.3 127 70.9
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.7e-41 172.9 153 63.4
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.2e-41 172.6 153 62.7
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 2.2e-41 172.6 156 64.1
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.9e-41 172.2 131 69.5
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.8e-41 171.8 138 66.7
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.5e-41 171.0 155 62.6
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.5e-41 171.0 158 62.0
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 8.5e-41 170.6 145 64.8
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.9e-40 169.5 148 63.5
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.9e-40 169.5 149 60.4
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.9e-40 169.5 132 66.7
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.5e-40 169.1 128 69.5
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 2.5e-40 169.1 146 65.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 2.5e-40 169.1 146 65.8
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.5e-40 169.1 155 63.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 3.2e-40 168.7 139 64.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 3.2e-40 168.7 159 60.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 3.2e-40 168.7 158 60.1
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.2e-40 168.3 149 64.4
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 4.2e-40 168.3 146 65.8
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 7.2e-40 167.5 155 61.9
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.2e-40 167.5 133 66.9
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 9.4e-40 167.2 133 66.9
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.4e-40 167.2 133 66.9
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 9.4e-40 167.2 127 67.7
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.2e-39 166.8 141 62.4
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 2.1e-39 166.0 155 61.9
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.1e-39 166.0 161 60.9
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.1e-39 166.0 139 64.0
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 2.7e-39 165.6 154 60.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 3.6e-39 165.2 123 69.1
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 6.1e-39 164.5 154 60.4
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 6.1e-39 164.5 139 62.6
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 7.9e-39 164.1 143 63.6
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 7.9e-39 164.1 153 60.1
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 7.9e-39 164.1 149 59.1
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.0e-38 163.7 143 62.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.0e-38 163.7 143 62.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.0e-38 163.7 147 63.3
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-38 163.7 162 60.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.0e-38 163.7 153 61.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.4e-38 163.3 126 67.5
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.4e-38 163.3 143 63.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.8e-38 162.9 124 71.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.3e-38 162.5 154 59.7
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.0e-38 162.2 140 62.1
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.0e-38 162.2 129 65.9
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.0e-38 162.2 157 61.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.2e-38 161.4 162 60.5
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 5.2e-38 161.4 124 66.1
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 5.2e-38 161.4 107 75.7
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 6.7e-38 161.0 139 61.9
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.7e-38 161.0 151 60.3
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 6.7e-38 161.0 105 77.1
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.7e-38 161.0 104 78.8
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.1e-37 160.2 125 64.8
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-37 159.8 166 57.8
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.5e-37 159.8 158 58.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 3.3e-37 158.7 139 61.9
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 3.3e-37 158.7 148 63.5
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 5.7e-37 157.9 155 59.4
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 7.4e-37 157.5 116 71.6
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 9.7e-37 157.1 114 68.4
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 9.7e-37 157.1 143 60.1
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 9.7e-37 157.1 101 75.2
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 9.7e-37 157.1 101 75.2
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 9.7e-37 157.1 107 72.9
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 9.7e-37 157.1 107 72.9
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 2.2e-36 156.0 157 59.9
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 2.2e-36 156.0 157 59.2
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.2e-36 156.0 130 62.3
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.8e-36 155.6 157 58.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 6.3e-36 154.5 175 54.3
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 3.1e-35 152.1 157 57.3
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 5.3e-35 151.4 150 59.3
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 9.1e-35 150.6 153 56.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-34 150.2 104 72.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.2e-34 150.2 151 57.6
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.2e-34 150.2 104 73.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.6e-34 149.8 151 57.6
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 2.6e-34 149.1 106 69.8
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.5e-34 148.3 152 57.2
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.5e-34 148.3 130 62.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 7.7e-34 147.5 104 70.2
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.0e-33 147.1 122 62.3
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.7e-33 146.4 156 57.1
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 2.9e-33 145.6 135 59.3
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.8e-33 145.2 140 60.7
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.5e-32 143.3 138 58.0
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.5e-32 143.3 147 58.5
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.9e-32 142.9 155 54.8
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 4.2e-32 141.7 116 64.7
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.2e-32 141.7 106 70.8
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 5.5e-32 141.4 138 57.2
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-31 140.2 178 49.4
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.6e-31 139.8 103 68.9
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.1e-31 139.4 159 50.9
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.7e-31 139.0 115 64.3
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 3.6e-31 138.7 115 66.1
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 6.1e-31 137.9 142 57.7
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 8.0e-31 137.5 122 60.7
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.0e-30 137.1 106 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.3e-30 136.0 148 57.4
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 6.3e-28 127.9 110 63.6
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-26 123.6 133 54.9
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-26 123.6 133 54.9
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 7.7e-26 120.9 107 60.7
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-25 120.6 133 54.1
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.3e-25 120.2 138 54.3
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 6.5e-25 117.9 134 54.5
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 6.5e-25 117.9 115 55.7
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.9e-24 116.3 103 60.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 5.5e-24 114.8 76 78.9
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.0e-22 110.5 118 55.1
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.8e-22 109.8 137 47.4
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.5e-21 106.7 58 86.2
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.7e-20 103.2 60 83.3
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 2.0e-18 96.3 75 64.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 5.9e-18 94.7 74 68.9
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 5.9e-18 94.7 61 80.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.7e-17 93.2 75 62.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 5.0e-17 91.7 75 61.3
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 6.1e-15 84.7 100 45.0
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 7.5e-13 77.8 45 77.8
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 6.3e-12 74.7 117 49.6
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.4e-11 73.6 84 54.8
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 3.1e-11 72.4 97 49.5
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.5e-08 62.8 113 37.2
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 5.6e-08 61.6 42 66.7
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 5.2e-06 55.1 148 31.1


User provided reference genes

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