Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.3e-39 166.0 85 100.0
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 3.4e-21 104.8 75 78.7
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 5.1e-17 90.9 53 84.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 6.7e-17 90.5 75 66.7
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.5e-16 89.4 66 69.7
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.3e-15 86.3 70 61.4
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 6.3e-15 84.0 53 73.6
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 8.2e-15 83.6 51 76.5
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 8.2e-15 83.6 51 76.5
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 1.4e-14 82.8 52 73.1
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 1.8e-14 82.4 52 73.1
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.4e-14 82.0 51 74.5
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 3.1e-14 81.6 51 74.5
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 3.1e-14 81.6 51 74.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 4.1e-14 81.3 61 62.3
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 4.1e-14 81.3 51 72.5
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 4.1e-14 81.3 62 61.3
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 5.3e-14 80.9 62 64.5
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 5.3e-14 80.9 51 74.5
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 6.9e-14 80.5 51 70.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 6.9e-14 80.5 52 69.2
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.0e-14 80.1 52 71.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 9.0e-14 80.1 52 71.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.2e-13 79.7 52 71.2
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.2e-13 79.7 52 69.2
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.2e-13 79.7 51 70.6
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.5e-13 79.3 54 64.8
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.5e-13 79.3 51 70.6
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 1.5e-13 79.3 52 69.2
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.6e-13 78.6 51 70.6
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 2.6e-13 78.6 51 68.6
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 2.6e-13 78.6 51 70.6
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.6e-13 78.6 76 55.3
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 2.6e-13 78.6 78 55.1
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 2.6e-13 78.6 51 70.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 2.6e-13 78.6 51 70.6
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 2.6e-13 78.6 51 70.6
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.4e-13 78.2 52 69.2
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.4e-13 78.2 52 69.2
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 3.4e-13 78.2 62 59.7
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 3.4e-13 78.2 50 72.0
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 3.4e-13 78.2 53 69.8
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.5e-13 77.8 49 73.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.5e-13 77.8 55 61.8
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 5.9e-13 77.4 53 62.3
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.9e-13 77.4 53 62.3
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 5.9e-13 77.4 51 70.6
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.9e-13 77.4 50 72.0
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.9e-13 77.4 50 72.0
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 7.7e-13 77.0 52 65.4
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.0e-12 76.6 51 66.7
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.3e-12 76.3 51 68.6
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.7e-12 75.9 53 60.4
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.7e-12 75.9 50 70.0
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.7e-12 75.9 50 70.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.7e-12 75.9 51 66.7
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.2e-12 75.5 53 60.4
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 2.2e-12 75.5 75 54.7
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 2.2e-12 75.5 48 70.8
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.2e-12 75.5 49 69.4
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.9e-12 75.1 53 58.5
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.9e-12 75.1 49 73.5
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.9e-12 75.1 52 65.4
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 2.9e-12 75.1 52 65.4
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.9e-12 75.1 53 64.2
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 5.0e-12 74.3 49 69.4
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 5.0e-12 74.3 49 67.3
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 5.0e-12 74.3 49 67.3
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 5.0e-12 74.3 52 63.5
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.0e-12 74.3 49 69.4
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.0e-12 74.3 49 69.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.0e-12 74.3 49 69.4
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 5.0e-12 74.3 51 66.7
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 5.0e-12 74.3 52 63.5
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 8.5e-12 73.6 49 65.3
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 8.5e-12 73.6 51 62.7
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.1e-11 73.2 52 61.5
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.1e-11 73.2 52 61.5
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.1e-11 73.2 52 61.5
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.1e-11 73.2 52 61.5
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.1e-11 73.2 52 61.5
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.1e-11 73.2 53 60.4
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.1e-11 73.2 52 63.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.1e-11 73.2 62 59.7
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.1e-11 73.2 51 66.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.4e-11 72.8 54 61.1
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.9e-11 72.4 49 65.3
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.5e-11 72.0 49 61.2
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 2.5e-11 72.0 49 61.2
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.5e-11 72.0 48 68.8
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.5e-11 72.0 49 65.3
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.5e-11 72.0 49 63.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 4.2e-11 71.2 62 54.8
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 4.2e-11 71.2 47 63.8
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 4.2e-11 71.2 62 54.8
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 4.2e-11 71.2 49 61.2
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 5.5e-11 70.9 52 59.6
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 5.5e-11 70.9 49 63.3
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 7.2e-11 70.5 52 59.6
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 7.2e-11 70.5 52 61.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 9.4e-11 70.1 49 63.3
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.2e-10 69.7 49 63.3
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.6e-10 69.3 51 70.6
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.1e-10 68.9 48 60.4
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 2.7e-10 68.6 51 62.7
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.7e-10 68.6 63 54.0
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.7e-10 68.6 63 54.0
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.6e-10 68.2 50 62.0
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.6e-10 68.2 50 64.0
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 7.9e-10 67.0 62 54.8
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.0e-09 66.6 51 64.7
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.8e-09 65.9 51 56.9
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.3e-09 65.5 54 55.6
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.3e-09 65.5 54 55.6
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.3e-09 65.5 54 55.6
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.1e-09 64.3 52 55.8
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 8.8e-09 63.5 51 56.9
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-08 62.8 51 66.7
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.5e-08 62.8 52 57.7
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.5e-08 62.0 49 63.3
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 2.5e-08 62.0 75 42.7
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 9.7e-08 60.1 48 54.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.8e-06 55.8 51 58.8


User provided reference genes

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