Gene: AT1G16430
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G16430
- Transcript Identifier AT1G16430.1
- Gene Type Coding gene
- Location Chr1 : 5614632-5615397 : positive
Gene Family Information
- ID HOM05D005429
- #Genes/#Species 140/94
- Phylogenetic origin
- ID ORTHO05D006697
- #Genes/#Species 139/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G16430.1
- uniprot Q9SA42
Descriptions
- Description Surfeit locus protein 5 subunit 22 of Mediator complex
- Computational description Surfeit locus protein 5 subunit 22 of Mediator complex; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med22 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G07950.1); Has 238 Blast hits to 238 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 12; Plants - 53; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006357 | IEA | Gene Ontology | regulation of transcription by RNA polymerase II | |
| GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003712 | IEA | Gene Ontology | transcription coregulator activity | |
| GO:0003712 | IEA | InterPro | transcription coregulator activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0016592 | IEA | GOA Database | mediator complex | |
| GO:0016592 | IDA IBA | Gene Ontology | mediator complex | 1 2 |
| GO:0016592 | IEA | InterPro | mediator complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR009332 | Mediator of RNA polymerase II transcription subunit 22 |
| Mapman id | Description |
|---|---|
| 15.3.4.4.1.8 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED22 |