Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 5.3e-182 641.0 341 100.0
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.9e-147 526.2 337 86.1
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.0e-100 370.9 324 63.3
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.3e-100 369.8 326 64.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 3.9e-100 369.0 325 62.8
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 5.1e-100 368.6 321 64.8
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 5.1e-100 368.6 324 62.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 8.7e-100 367.9 333 62.2
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.9e-99 366.7 324 62.3
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.3e-99 365.9 324 62.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 4.3e-99 365.5 327 63.3
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 9.6e-99 364.4 324 61.7
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 8.1e-98 361.3 324 62.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.1e-97 360.9 325 60.9
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.1e-97 360.9 325 60.9
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.1e-97 360.9 326 62.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.4e-97 359.8 326 63.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 2.4e-97 359.8 322 63.0
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.1e-97 359.4 316 63.3
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.1e-97 359.4 325 60.6
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 3.1e-97 359.4 324 61.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 5.3e-97 358.6 327 61.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.0e-97 357.8 325 60.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-96 357.5 322 60.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-96 357.5 319 63.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.2e-96 357.5 323 61.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.2e-96 357.5 326 62.0
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.0e-96 356.7 336 60.4
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.0e-96 356.7 318 63.2
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.0e-96 356.7 318 62.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 7.6e-96 354.8 324 60.5
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 7.6e-96 354.8 336 59.2
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.7e-95 353.6 320 61.9
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.9e-95 352.8 333 59.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.9e-95 352.1 321 61.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 6.5e-95 351.7 324 60.8
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 8.4e-95 351.3 318 61.9
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.5e-94 349.7 333 59.8
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.2e-94 349.4 327 60.2
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.2e-94 349.0 316 62.3
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 5.5e-94 348.6 354 56.8
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 7.1e-94 348.2 334 58.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.2e-93 347.4 318 61.6
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.6e-93 347.1 324 60.2
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.0e-93 345.1 325 60.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 7.9e-93 344.7 323 59.1
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-92 344.0 323 60.4
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.3e-92 344.0 334 57.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.8e-92 343.6 326 60.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 8.7e-92 341.3 324 59.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.3e-91 339.3 324 58.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.3e-91 339.3 326 58.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.4e-91 338.2 323 58.8
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.7e-90 335.9 321 60.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.8e-89 333.6 333 56.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.1e-89 332.8 323 58.2
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.5e-88 330.5 324 58.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.0e-88 330.1 334 57.5
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.0e-88 330.1 323 58.5
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.4e-88 329.3 323 58.5
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.3e-87 327.4 324 57.7
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.7e-87 327.0 322 58.1
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 3.2e-86 322.8 324 57.4
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.6e-85 320.5 323 57.3
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.0e-84 317.8 323 58.2
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.2e-82 310.1 336 55.4
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.8e-82 309.7 324 56.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 6.3e-82 308.5 339 53.7
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.8e-81 307.0 292 61.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.3e-81 305.4 322 54.7
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 9.0e-81 304.7 320 56.2
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.5e-80 303.9 322 55.6
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.6e-80 303.1 323 54.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.5e-80 302.4 323 54.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.0e-79 301.2 323 55.1
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.5e-79 298.5 390 49.0
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 8.5e-79 298.1 316 55.4
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.5e-78 296.6 320 55.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.2e-78 296.2 327 54.4
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.4e-78 294.7 324 54.6
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.4e-78 294.7 324 54.6
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.6e-77 292.7 323 53.6
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-76 291.2 323 53.3
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.4e-76 290.8 323 53.9
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 8.8e-76 288.1 323 54.5
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.6e-75 286.6 330 52.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.6e-75 286.6 272 58.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.3e-75 286.2 319 53.6
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.4e-75 285.8 323 53.6
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.7e-74 283.9 322 53.1
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.7e-74 282.7 323 52.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.4e-73 280.0 327 52.3
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 2.4e-73 280.0 326 52.1
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.3e-73 278.9 326 51.5
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.5e-72 277.3 323 53.3
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.0e-72 276.9 314 54.8
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.6e-72 276.6 321 55.8
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.5e-72 275.8 325 52.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 5.9e-72 275.4 327 51.1
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.3e-71 274.2 324 51.9
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.7e-71 273.9 323 51.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.2e-71 273.5 323 52.9
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 5.0e-71 272.3 323 53.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.5e-71 271.9 322 51.9
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.5e-71 271.6 324 53.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.2e-69 267.7 339 49.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.7e-69 265.8 326 50.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.7e-69 265.8 368 47.8
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 6.1e-69 265.4 323 51.7
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.0e-68 264.6 264 55.7
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.0e-68 263.1 272 55.5
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 8.8e-68 261.5 344 48.0
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.3e-67 259.6 277 53.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.7e-67 258.8 313 51.8
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 5.7e-67 258.8 325 50.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 5.7e-67 258.8 325 50.8
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 5.7e-67 258.8 325 50.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-66 257.7 320 50.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.2e-66 256.9 315 50.8
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.8e-66 256.5 325 50.5
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.4e-65 254.2 326 50.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.8e-65 253.8 316 50.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 4.1e-65 252.7 325 48.9
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 5.3e-65 252.3 268 55.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-64 251.1 323 48.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.5e-64 249.2 319 48.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.0e-63 248.1 321 48.9
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.9e-63 246.5 310 51.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 3.8e-63 246.1 323 47.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.1e-62 244.6 320 48.8
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.8e-60 237.3 325 48.0
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.3e-60 236.9 322 46.6
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.3e-59 233.0 329 45.6
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-59 233.0 319 46.4
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.7e-59 232.3 286 52.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.8e-58 229.9 290 49.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.7e-58 229.6 192 65.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 8.2e-58 228.4 285 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 3.1e-57 226.5 338 42.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 7.7e-56 221.9 193 63.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.0e-55 221.5 305 48.9
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-55 221.1 329 46.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.2e-55 220.3 281 48.8
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.9e-55 219.9 251 53.0
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.5e-54 216.9 205 60.5
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.1e-53 213.8 326 43.6
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.8e-52 210.7 323 43.7
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 7.5e-51 205.3 317 45.1
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 8.3e-50 201.8 320 42.5
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.7e-48 196.8 336 41.7
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.9e-46 190.7 272 46.3
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 7.2e-46 188.7 136 75.7
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 6.1e-45 185.7 290 45.5
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.0e-43 180.6 324 38.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 5.7e-43 179.1 293 43.7
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.8e-41 174.1 326 40.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.4e-41 173.7 166 59.0
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.7e-39 167.5 142 62.7
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.5e-38 163.7 233 46.8
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 5.2e-36 156.0 236 44.9
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.9e-34 150.2 155 58.1
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.7e-31 141.0 169 48.5
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.9e-30 137.5 303 37.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.2e-29 134.8 311 36.7
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.4e-27 126.7 317 35.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.0e-24 117.5 139 53.2
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.9e-23 113.2 292 36.3
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 8.1e-21 105.5 311 33.4
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 8.1e-21 105.5 311 33.4
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.6e-13 80.1 111 49.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.8e-12 77.8 54 77.8
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 4.4e-11 73.2 111 46.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 3.8e-10 70.1 49 77.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.5e-08 63.5 308 28.6


User provided reference genes

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