Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb225930 Zea mays HOM05D007007 ORTHO05D008335 3.5e-61 238.0 115 100.0
Zm00001eb414200 Zea mays HOM05D007007 ORTHO05D008335 1.0e-31 140.2 72 93.1
Zm00001eb327980 Zea mays HOM05D007007 ORTHO05D008335 1.6e-29 132.9 73 84.9
TAR628G0829 Trochodendron aralioides HOM05D000382 ORTHO05D000391 8.7e-28 127.1 119 55.5
Os07g0626400 Oryza sativa ssp. japonica HOM05D007007 ORTHO05D008335 1.1e-27 126.7 73 79.5
TAR381G0384 Trochodendron aralioides HOM05D007007 ORTHO05D008335 3.7e-26 121.7 95 64.2
Aqoxy6G00506 Aquilegia oxysepala HOM05D007007 ORTHO05D008335 5.3e-25 117.9 95 62.1
Cc10_g06060 Coffea canephora HOM05D007007 ORTHO05D008335 9.0e-25 117.1 73 72.6
Glyma.04G254700 Glycine max HOM05D007007 ORTHO05D008335 1.2e-24 116.7 73 72.6
Manes.18G071800 Manihot esculenta HOM05D007007 ORTHO05D008335 1.2e-24 116.7 73 71.2
EL10Ac1g01704 Beta vulgaris HOM05D007007 ORTHO05D008335 1.5e-24 116.3 95 61.1
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 2.0e-24 115.9 95 61.1
Ca_25771_v3 Cicer arietinum L. HOM05D007007 ORTHO05D008335 2.0e-24 115.9 73 71.2
Dinv44721 Davidia involucrata HOM05D007007 ORTHO05D008335 2.0e-24 115.9 73 71.2
Gohir.A01G187200 Gossypium hirsutum HOM05D007007 ORTHO05D008335 2.0e-24 115.9 73 72.6
Gohir.D01G182500 Gossypium hirsutum HOM05D007007 ORTHO05D008335 2.0e-24 115.9 73 72.6
PSO541G0161 Papaver somniferum HOM05D007007 ORTHO05D008335 2.0e-24 115.9 95 62.1
PSO675G2451 Papaver somniferum HOM05D007007 ORTHO05D008335 2.0e-24 115.9 95 62.1
Atru.chr13.1299 Acer truncatum HOM05D007007 ORTHO05D008335 2.6e-24 115.5 73 72.6
Actinidia10285 Actinidia chinensis HOM05D007007 ORTHO05D008335 2.6e-24 115.5 73 68.5
ATR0564G456 Amborella trichopoda HOM05D007007 ORTHO05D008335 3.4e-24 115.2 73 71.2
VMungo1309G1520 Vigna mungo HOM05D007007 ORTHO05D008335 3.4e-24 115.2 122 51.6
Dinv13068 Davidia involucrata HOM05D007007 ORTHO05D008335 4.5e-24 114.8 73 69.9
Gorai.002G219900 Gossypium raimondii HOM05D007007 ORTHO05D008335 4.5e-24 114.8 73 71.2
AL2G38190 Arabidopsis lyrata HOM05D007007 ORTHO05D008335 5.9e-24 114.4 73 69.9
Cpa.g.sc49.113 Carica papaya HOM05D007007 ORTHO05D008335 5.9e-24 114.4 73 71.2
CiPaw.06G023600 Carya illinoinensis HOM05D007007 ORTHO05D008335 5.9e-24 114.4 95 60.0
Eucgr.F03733 Eucalyptus grandis HOM05D007007 ORTHO05D008335 5.9e-24 114.4 73 71.2
Ah.05g168490 Amaranthus hybridus HOM05D007007 ORTHO05D008335 7.6e-24 114.0 95 60.0
CSS0021349 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 7.6e-24 114.0 73 72.6
Hund26658 Selenicereus undatus HOM05D007007 ORTHO05D008335 7.6e-24 114.0 73 69.9
MSTRG.24958 Avicennia marina HOM05D007007 ORTHO05D008335 1.0e-23 113.6 73 69.9
BcaC08g45443 Brassica carinata HOM05D007007 ORTHO05D008335 1.0e-23 113.6 73 69.9
A07p27780 Brassica napus HOM05D000382 ORTHO05D008335 1.0e-23 113.6 73 71.2
C06p30730 Brassica napus HOM05D000382 ORTHO05D008335 1.0e-23 113.6 73 69.9
BraA07t30417Z Brassica rapa HOM05D000382 ORTHO05D008335 1.0e-23 113.6 73 71.2
PGR042G1361 Punica granatum HOM05D007007 ORTHO05D008335 1.0e-23 113.6 73 69.9
Sc26g0002350 Simmondsia chinensis HOM05D007007 ORTHO05D008335 1.0e-23 113.6 73 71.2
THA.LOC104800169 Tarenaya hassleriana HOM05D007007 ORTHO05D008335 1.0e-23 113.6 73 69.9
CiPaw.05G230900 Carya illinoinensis HOM05D007007 ORTHO05D008335 1.3e-23 113.2 73 69.9
ECA246G4837 Erigeron canadensis HOM05D000382 ORTHO05D008335 1.3e-23 113.2 73 69.9
Thhalv10018996m.g Eutrema salsugineum HOM05D007007 ORTHO05D008335 1.3e-23 113.2 73 69.9
Sopen12g029530 Solanum pennellii HOM05D007007 ORTHO05D008335 1.3e-23 113.2 73 67.1
arahy.Tifrunner.gnm1.ann1.4WA5US Arachis hypogaea HOM05D000382 ORTHO05D008335 1.7e-23 112.8 73 69.9
HanXRQChr05g0162301 Helianthus annuus HOM05D007007 ORTHO05D008335 1.7e-23 112.8 73 69.9
Nn1g05208 Nelumbo nucifera HOM05D007007 ORTHO05D008335 1.7e-23 112.8 72 68.1
RcHm_v2.0_Chr7g0240411 Rosa chinensis HOM05D007007 ORTHO05D008335 1.7e-23 112.8 73 68.5
Cfa015946 Carpinus fangiana HOM05D007007 ORTHO05D008335 2.2e-23 112.5 95 58.9
Glyma.06G107400 Glycine max HOM05D007007 ORTHO05D008335 2.2e-23 112.5 73 69.9
BcaB02g07139 Brassica carinata HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 68.5
Carub.0002s2481 Capsella rubella HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 68.5
CARHR071400 Cardamine hirsuta HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 68.5
AUR62043509 Chenopodium quinoa HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 67.1
MELO3C011379.2 Cucumis melo HOM05D007007 ORTHO05D008335 2.9e-23 112.1 76 67.1
Lsat_1_v5_gn_6_101981 Lactuca sativa HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 68.5
Lj1g0002230 Lotus japonicus HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 69.9
Peaxi162Scf00160g01640 Petunia axillaris HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 69.9
Prupe.1G508000 Prunus persica HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 69.9
QL12p035500 Quercus lobata HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 69.9
Sed0027281 Sechium edule HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 68.5
Solyc12g056850.2 Solanum lycopersicum HOM05D007007 ORTHO05D008335 2.9e-23 112.1 73 67.1
SGA_v2.0_scaffold28G11941 Striga asiatica HOM05D001694 ORTHO05D000248 2.9e-23 112.1 73 68.5
Aa31LG4G8000 Aethionema arabicum HOM05D007007 ORTHO05D008335 3.8e-23 111.7 73 68.5
AT1G77930 Arabidopsis thaliana HOM05D007007 ORTHO05D008335 3.8e-23 111.7 73 69.9
CAN.G47.18 Capsicum annuum HOM05D007007 ORTHO05D008335 3.8e-23 111.7 73 67.1
AUR62022326 Chenopodium quinoa HOM05D007007 ORTHO05D008335 3.8e-23 111.7 73 67.1
PGSC0003DMG400016952 Solanum tuberosum HOM05D007007 ORTHO05D008335 3.8e-23 111.7 73 67.1
GSVIVG01008959001 Vitis vinifera HOM05D007007 ORTHO05D008335 3.8e-23 111.7 73 68.5
ClCG08G010830 Citrullus lanatus HOM05D007007 ORTHO05D008335 5.0e-23 111.3 73 68.5
DCAR_009583 Daucus carota HOM05D007007 ORTHO05D008335 5.0e-23 111.3 73 67.1
Migut.N02916 Erythranthe guttata HOM05D007007 ORTHO05D008335 5.0e-23 111.3 73 67.1
Sp5g33080 Schrenkiella parvula HOM05D007007 ORTHO05D008335 5.0e-23 111.3 73 68.5
Phvul.009G026800 Phaseolus vulgaris HOM05D007007 ORTHO05D008335 6.5e-23 110.9 73 68.5
CANSAT01G1447 Cannabis sativa HOM05D007007 ORTHO05D008335 8.4e-23 110.5 73 65.8
Duzib041G0122 Durio zibethinus HOM05D007007 ORTHO05D008335 8.4e-23 110.5 73 69.9
Nitab4.5_0000425g0200 Nicotiana tabacum HOM05D007007 ORTHO05D008335 8.4e-23 110.5 73 68.5
Psat5g136560 Pisum sativum HOM05D007007 ORTHO05D008335 8.4e-23 110.5 73 68.5
TPR.G32949 Trifolium pratense HOM05D007007 ORTHO05D008335 8.4e-23 110.5 73 67.1
CsaV3_6G035710 Cucumis sativus L. HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 67.1
FAN04G0256 Fragaria x ananassa HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 67.1
FAN08G0847 Fragaria x ananassa HOM05D000382 ORTHO05D008335 1.1e-22 110.2 73 67.1
FAN13G0083 Fragaria x ananassa HOM05D000382 ORTHO05D008335 1.1e-22 110.2 73 67.1
FAN18G4539 Fragaria x ananassa HOM05D000382 ORTHO05D008335 1.1e-22 110.2 73 67.1
MD08G1174100 Malus domestica HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 67.1
MD15G1360500 Malus domestica HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 67.1
Nitab4.5_0006745g0010 Nicotiana tabacum HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 67.1
Oeu035395.1 Olea europaea HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 65.8
Thecc.08G115100 Theobroma cacao HOM05D007007 ORTHO05D008335 1.1e-22 110.2 73 69.9
arahy.Tifrunner.gnm1.ann1.PLAH4H Arachis hypogaea HOM05D007007 ORTHO05D008335 1.4e-22 109.8 73 68.5
CSS0030134 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 1.4e-22 109.8 73 69.9
Ciclev10002163m.g Citrus clementina HOM05D007007 ORTHO05D008335 2.5e-22 109.0 73 67.1
TWI12G0615 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 2.5e-22 109.0 73 65.8
FvH4_5g38391 Fragaria vesca HOM05D007007 ORTHO05D008335 3.2e-22 108.6 73 65.8
Potri.002G090600 Populus trichocarpa HOM05D007007 ORTHO05D008335 5.5e-22 107.8 73 65.8
TWI36G1549 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 7.2e-22 107.5 73 64.4
Hma1.2p1_1060F.1_g253190 Hydrangea macrophylla HOM05D007007 ORTHO05D008335 9.3e-22 107.1 73 65.8
Lj4A109T45 Lonicera japonica HOM05D007007 ORTHO05D008335 1.2e-21 106.7 73 63.0
Lalb_Chr08g0241781 Lupinus albus HOM05D007007 ORTHO05D008335 1.2e-21 106.7 71 70.4
HanXRQChr14g0427051 Helianthus annuus HOM05D007007 ORTHO05D008335 1.6e-21 106.3 73 64.4
Medtr3g073560 Medicago truncatula HOM05D000382 ORTHO05D008335 1.6e-21 106.3 73 65.8
CDE03G0075 Ceratophyllum demersum HOM05D007007 ORTHO05D008335 2.1e-21 105.9 95 54.7
Rhsim06G0087100 Rhododendron simsii HOM05D007007 ORTHO05D008335 1.0e-20 103.6 92 57.6
vmacro21211 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 2.3e-20 102.4 108 50.0
ClCG08G002650 Citrullus lanatus HOM05D007007 ORTHO05D008335 3.0e-20 102.1 85 58.8
SEGI_37339 Sequoiadendron giganteum HOM05D007007 ORTHO05D008335 3.0e-20 102.1 72 63.9
Haze_00544 Corylus avellana HOM05D007007 ORTHO05D008335 1.9e-19 99.4 121 47.1
unitig_578.g16208 Utricularia gibba HOM05D007007 ORTHO05D008335 2.5e-19 99.0 81 58.0
Mapoly0002s0118 Marchantia polymorpha HOM05D007007 ORTHO05D008335 5.7e-19 97.8 73 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1161 Anthoceros agrestis HOM05D007007 ORTHO05D008335 4.8e-18 94.7 70 58.6
Pp3c4_24430 Physcomitrium patens HOM05D007007 ORTHO05D008335 6.9e-17 90.9 72 52.8
arahy.Tifrunner.gnm1.ann1.J1JBQA Arachis hypogaea HOM05D007007 ORTHO05D008335 1.5e-16 89.7 129 40.3
SMO367G0886 Selaginella moellendorffii HOM05D007007 ORTHO05D008335 4.5e-16 88.2 107 44.9
Actinidia15631 Actinidia chinensis HOM05D007007 ORTHO05D008335 2.5e-11 72.4 60 58.3
CSS0009195 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 1.2e-08 63.5 59 55.9
Actinidia26526 Actinidia chinensis HOM05D007007 ORTHO05D008335 2.2e-07 59.3 29 79.3
Zm00001eb237670 Zea mays HOM05D007007 ORTHO05D008335 8.5e-07 57.4 47 63.8
Zm00001eb061440 Zea mays HOM05D002898 ORTHO05D003424 1.1e-06 57.0 42 73.8
Zm00001eb207340 Zea mays HOM05D007007 ORTHO05D008335 3.2e-06 55.5 47 63.8
Zm00001eb350940 Zea mays HOM05D007007 ORTHO05D008335 3.2e-06 55.5 47 63.8


User provided reference genes

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