Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.1e-87 327.0 226 100.0
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 2.4e-61 239.6 239 80.8
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 4.5e-52 208.8 204 83.3
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 7.6e-52 208.0 209 80.9
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 1.7e-51 206.8 205 81.5
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 1.7e-51 206.8 180 88.9
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 1.7e-51 206.8 206 80.1
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 2.2e-51 206.5 206 80.1
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 2.9e-51 206.1 180 91.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.8e-51 205.7 180 91.1
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 3.8e-51 205.7 210 80.0
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 6.5e-51 204.9 205 80.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 6.5e-51 204.9 180 89.4
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.1e-50 204.1 220 67.7
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.4e-50 203.8 180 88.3
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.9e-50 203.4 180 90.6
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 4.2e-50 202.2 205 81.0
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 4.2e-50 202.2 205 82.4
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 5.5e-50 201.8 205 80.5
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 5.5e-50 201.8 223 77.6
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 7.2e-50 201.4 179 88.3
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 9.3e-50 201.1 202 80.7
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-49 200.7 232 76.3
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.6e-49 200.3 180 89.4
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 2.1e-49 199.9 205 80.0
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 2.1e-49 199.9 205 79.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.7e-49 199.5 180 88.9
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.7e-49 199.5 180 61.7
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 2.7e-49 199.5 180 87.8
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.5e-49 199.1 180 87.8
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 3.5e-49 199.1 180 87.8
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 4.6e-49 198.7 204 79.9
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 7.9e-49 198.0 205 79.5
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.0e-48 197.6 209 79.4
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.3e-48 197.2 180 87.2
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 1.3e-48 197.2 180 87.8
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.3e-48 197.2 208 78.8
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.3e-48 197.2 208 78.8
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.3e-48 197.2 205 78.5
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 1.8e-48 196.8 180 86.7
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.3e-48 196.4 180 86.7
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 3.0e-48 196.1 202 79.7
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 3.0e-48 196.1 205 80.0
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 3.0e-48 196.1 205 78.5
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 6.7e-48 194.9 179 84.9
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 6.7e-48 194.9 219 75.8
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 6.7e-48 194.9 184 84.8
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 6.7e-48 194.9 205 78.0
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 8.7e-48 194.5 231 73.2
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.1e-47 194.1 203 79.8
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.1e-47 194.1 222 75.2
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.5e-47 193.7 206 80.1
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.5e-47 193.7 180 85.6
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 1.9e-47 193.4 180 85.6
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 1.9e-47 193.4 179 87.2
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 2.5e-47 193.0 205 77.6
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.3e-47 192.2 180 71.7
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 5.7e-47 191.8 233 72.1
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 7.4e-47 191.4 179 86.6
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 7.4e-47 191.4 203 78.8
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 9.7e-47 191.0 210 77.1
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 9.7e-47 191.0 210 77.1
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 9.7e-47 191.0 180 87.8
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 9.7e-47 191.0 204 64.2
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-46 190.7 210 77.1
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 1.3e-46 190.7 223 75.3
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.6e-46 190.3 205 76.6
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.6e-46 190.3 184 83.7
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 2.2e-46 189.9 223 74.4
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.8e-46 189.5 235 73.2
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 3.7e-46 189.1 185 84.3
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 3.7e-46 189.1 204 76.5
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 6.3e-46 188.3 202 77.7
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 6.3e-46 188.3 209 77.5
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.4e-45 187.2 184 83.2
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.8e-45 186.8 177 85.9
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.1e-45 186.0 210 76.7
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.3e-45 185.3 213 76.1
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.3e-45 185.3 234 72.6
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.2e-44 184.1 179 84.4
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.2e-44 184.1 209 76.1
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.4e-44 182.6 180 58.9
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.4e-44 182.6 186 80.6
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 4.5e-44 182.2 181 83.4
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 7.7e-44 181.4 208 75.5
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 7.7e-44 181.4 180 82.8
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.9e-43 179.5 207 75.8
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 3.2e-42 176.0 130 72.3
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 9.4e-42 174.5 185 80.5
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.2e-41 174.1 127 73.2
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.6e-41 173.7 178 81.5
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-41 172.9 102 86.3
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-41 172.9 102 86.3
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-41 172.9 102 86.3
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 3.6e-41 172.6 185 80.0
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 1.0e-40 171.0 185 79.5
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 1.0e-40 171.0 185 79.5
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 1.0e-40 171.0 185 79.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-40 170.6 128 71.9
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.8e-40 170.2 185 67.0
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.8e-40 170.2 185 79.5
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.8e-40 170.2 185 79.5
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-40 170.2 102 84.3
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.8e-40 170.2 220 70.9
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 3.0e-40 169.5 185 79.5
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 5.1e-40 168.7 226 69.9
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-40 168.7 180 59.4
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-40 168.7 102 84.3
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 4.3e-39 165.6 218 71.1
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 4.3e-39 165.6 207 73.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.3e-38 164.1 166 83.7
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-38 164.1 158 86.1
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.7e-38 163.7 157 87.9
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.8e-38 162.9 128 72.7
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.4e-37 160.6 182 53.8
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.4e-37 160.6 182 53.8
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 9.1e-37 157.9 116 69.0
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-36 157.5 230 69.1
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-36 157.5 180 57.8
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 5.9e-36 155.2 231 63.6
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 5.9e-36 155.2 226 63.3
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.2e-34 148.3 78 92.3
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 2.3e-32 143.3 103 71.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 5.1e-32 142.1 156 79.5
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 7.4e-31 138.3 145 57.2
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 2.2e-27 126.7 235 56.2
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 9.4e-26 121.3 209 65.6
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 5.3e-21 105.5 64 75.0
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.9e-11 73.2 110 80.0
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.9e-11 73.2 216 38.9


User provided reference genes

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