Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 0.0e+00 1619.8 819 100.0
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 0.0e+00 1411.4 823 87.6
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 0.0e+00 1130.2 836 71.4
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.1e-163 580.5 726 46.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.3e-162 577.0 553 53.3
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 3.6e-160 569.7 849 41.9
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.5e-158 564.3 860 42.2
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 2.6e-158 563.5 855 42.3
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.4e-158 562.8 860 42.9
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 4.4e-158 562.8 854 42.3
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 9.9e-158 561.6 842 42.6
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.4e-156 557.8 579 50.4
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.1e-155 553.9 849 40.0
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 6.0e-155 552.4 851 40.7
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 6.0e-155 552.4 846 42.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 7.8e-155 552.0 870 41.6
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.0e-154 551.6 580 49.5
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.3e-154 551.2 886 40.2
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.3e-154 550.4 851 41.7
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.0e-154 550.1 839 41.5
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.9e-154 549.7 610 49.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.9e-154 549.7 845 40.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.9e-153 547.4 868 40.7
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 9.6e-153 545.0 858 41.1
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.1e-152 542.0 868 40.6
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.8e-151 540.8 849 41.0
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.8e-151 540.8 849 40.2
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 5.2e-151 539.3 855 40.2
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 5.2e-151 539.3 601 48.6
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.8e-151 538.9 895 39.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 8.9e-151 538.5 846 41.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 3.4e-150 536.6 849 40.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 4.4e-150 536.2 850 40.0
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 5.8e-150 535.8 859 41.0
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 7.6e-150 535.4 851 40.7
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 9.9e-150 535.0 853 40.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 9.9e-150 535.0 660 45.9
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.3e-149 534.6 856 40.4
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 2.9e-149 533.5 613 47.8
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.9e-149 533.5 856 39.7
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 4.9e-149 532.7 862 39.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 4.9e-149 532.7 652 46.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 6.4e-149 532.3 900 39.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.4e-149 531.9 841 40.5
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 8.4e-149 531.9 835 40.1
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.1e-148 531.6 826 40.2
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.4e-148 531.2 861 40.9
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.4e-148 531.2 856 39.6
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 2.4e-148 530.4 842 40.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 3.2e-148 530.0 859 40.6
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 4.2e-148 529.6 847 40.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 4.2e-148 529.6 651 47.3
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-147 528.1 856 40.8
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.6e-147 527.7 850 39.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.6e-147 527.7 814 40.8
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 3.5e-147 526.6 850 40.1
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 3.5e-147 526.6 598 47.2
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.5e-147 526.6 851 40.1
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.0e-147 525.8 849 39.9
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 6.0e-147 525.8 657 44.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.8e-147 525.4 865 40.1
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.0e-146 525.0 855 39.3
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.0e-146 525.0 851 39.5
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.3e-146 524.6 852 39.2
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.3e-146 523.9 843 39.0
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 3.0e-146 523.5 848 39.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.5e-145 521.2 616 47.6
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.5e-145 520.4 809 40.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.5e-145 520.4 525 51.2
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 2.5e-145 520.4 549 48.8
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 3.3e-145 520.0 832 39.7
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 7.3e-145 518.8 494 54.3
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 2.1e-144 517.3 870 39.2
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.1e-144 517.3 857 38.5
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 2.8e-144 516.9 831 41.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 3.6e-144 516.5 869 39.4
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 3.6e-144 516.5 855 38.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 4.8e-144 516.2 861 40.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.1e-143 513.5 866 38.8
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.1e-143 513.5 866 38.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.6e-142 510.4 872 39.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.4e-142 510.0 534 50.6
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.8e-142 509.2 640 44.2
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 5.8e-142 509.2 556 48.2
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.8e-142 509.2 872 38.9
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 1.7e-141 507.7 550 49.5
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.9e-141 506.9 557 48.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.9e-141 506.9 872 38.8
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.9e-141 506.9 681 44.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 8.4e-141 505.4 584 47.6
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.1e-140 505.0 825 39.4
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.9e-140 504.2 858 37.6
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 6.6e-138 495.7 867 39.3
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 5.6e-137 492.7 563 45.5
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 2.1e-136 490.7 638 43.7
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.4e-135 487.3 552 47.8
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.0e-134 484.2 836 38.9
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.3e-133 481.5 859 38.5
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.2e-133 480.7 575 46.3
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.1e-132 478.4 870 37.9
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.5e-131 473.4 889 37.1
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 7.9e-131 472.2 535 47.5
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.7e-130 468.8 815 36.7
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.5e-126 456.4 855 37.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 3.8e-125 453.4 828 37.7
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.1e-121 441.8 597 42.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.4e-119 434.9 554 42.8
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.7e-117 427.9 857 35.7
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.0e-114 417.2 504 47.8
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.5e-113 414.1 610 41.1
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 9.7e-113 412.1 496 45.6
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.2e-112 411.0 781 36.0
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.7e-112 410.2 590 39.3
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.4e-111 407.5 572 39.9
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.6e-107 394.8 600 40.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.9e-100 371.3 428 48.1
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.4e-98 365.2 522 38.7
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-90 338.2 452 42.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 4.0e-90 337.0 319 52.0
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.8e-87 328.2 307 53.1
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 2.4e-87 327.8 570 37.4
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 2.1e-83 314.7 659 31.9
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.2e-80 304.7 475 39.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.1e-76 292.4 290 51.7
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 2.8e-67 261.2 548 33.0
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.4e-57 227.3 131 89.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 8.3e-56 223.0 555 35.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.2e-54 219.2 547 33.8
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.8e-51 208.0 260 43.8
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.7e-48 198.7 281 42.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 5.4e-39 167.2 245 40.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.7e-37 162.2 134 60.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.9e-28 132.1 350 30.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 5.6e-28 130.6 511 25.4
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.4e-23 115.2 127 47.2
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.3e-21 109.4 551 24.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.5e-20 105.9 65 69.2
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.3e-20 104.4 65 69.2
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 4.0e-18 97.8 72 62.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 5.3e-18 97.4 145 43.4
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 4.6e-14 84.3 49 85.7
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 6.0e-14 84.0 161 37.9
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.5e-12 79.3 185 30.8
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-09 69.7 41 70.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.4e-07 62.8 36 75.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 7.1e-07 60.5 77 40.3


User provided reference genes

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