Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.5e-133 479.9 322 100.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 4.4e-93 345.5 310 82.3
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 5.0e-65 252.3 342 50.9
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.5e-64 250.8 341 51.0
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 3.1e-62 243.0 345 50.4
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 2.0e-61 240.4 345 51.0
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 4.4e-61 239.2 345 50.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 5.8e-61 238.8 338 47.9
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 4.9e-60 235.7 331 50.8
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 6.4e-60 235.3 330 49.4
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 6.4e-60 235.3 343 49.9
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 7.0e-59 231.9 336 47.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 2.0e-58 230.3 340 48.5
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.3e-57 227.6 333 48.0
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 5.0e-57 225.7 347 47.3
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 1.9e-56 223.8 345 50.4
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.9e-56 223.8 346 49.4
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.9e-56 223.8 343 48.4
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 5.6e-56 222.2 350 45.7
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 7.3e-56 221.9 338 51.5
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.2e-55 221.1 343 56.3
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 4.7e-55 219.2 359 45.7
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 4.7e-55 219.2 343 55.7
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 8.1e-55 218.4 356 46.6
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.1e-54 218.0 345 46.7
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.1e-54 218.0 343 55.4
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.8e-54 217.2 333 45.6
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.1e-54 216.5 368 44.0
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 5.2e-54 215.7 308 57.5
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 6.8e-54 215.3 330 46.4
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.5e-53 214.2 341 46.3
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 2.6e-53 213.4 345 47.5
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.4e-53 213.0 285 48.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 5.8e-53 212.2 283 50.9
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 7.5e-53 211.8 358 42.7
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.7e-52 210.7 289 50.2
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 2.2e-52 210.3 358 42.2
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.9e-52 209.9 335 46.3
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.9e-52 209.9 357 45.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 4.9e-52 209.1 346 46.8
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.9e-52 209.1 282 49.3
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.4e-52 208.8 335 51.0
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 6.4e-52 208.8 341 47.8
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.1e-51 208.0 323 45.8
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.9e-51 207.2 333 54.7
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 2.4e-51 206.8 334 45.2
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.4e-51 206.8 340 47.4
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.2e-51 206.5 282 49.3
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 4.1e-51 206.1 346 51.4
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.6e-50 204.1 310 46.8
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 2.7e-50 203.4 329 45.3
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 4.6e-50 202.6 321 45.5
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 6.0e-50 202.2 286 49.7
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 6.0e-50 202.2 354 44.9
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.0e-49 201.4 330 44.8
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.3e-49 201.1 326 45.4
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 1.3e-49 201.1 296 45.9
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.3e-49 201.1 342 44.7
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.7e-49 200.7 350 44.0
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.7e-49 200.7 333 45.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.3e-49 200.3 331 46.2
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.3e-49 200.3 324 44.8
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 2.3e-49 200.3 261 55.6
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 3.9e-49 199.5 267 48.3
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 5.1e-49 199.1 355 42.8
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 6.6e-49 198.7 297 49.5
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 6.6e-49 198.7 341 44.3
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.5e-48 197.6 363 47.4
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.5e-48 197.6 294 48.3
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.5e-48 196.8 331 51.7
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 3.3e-48 196.4 317 45.1
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.5e-48 194.9 292 45.2
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 9.5e-48 194.9 332 43.4
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.6e-47 194.1 368 41.3
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.1e-47 193.7 286 47.2
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 2.1e-47 193.7 382 43.2
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.8e-47 193.4 195 55.9
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 2.8e-47 193.4 327 45.9
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 8.1e-47 191.8 341 46.6
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.4e-46 191.0 340 43.2
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.8e-46 190.7 329 41.9
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 3.1e-46 189.9 242 56.6
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 4.0e-46 189.5 328 44.5
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 6.8e-46 188.7 328 55.8
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 8.9e-46 188.3 292 44.2
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.2e-45 188.0 273 46.5
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.2e-45 188.0 347 43.8
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.5e-45 187.6 316 48.4
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.5e-45 187.6 316 48.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.5e-45 187.6 193 57.5
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.0e-45 187.2 231 51.5
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 2.6e-45 186.8 196 57.1
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.4e-45 186.0 346 53.8
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 7.6e-45 185.3 198 57.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 9.9e-45 184.9 358 45.3
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 9.9e-45 184.9 259 46.7
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.7e-44 184.1 273 52.4
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.7e-44 184.1 349 46.7
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 2.2e-44 183.7 282 45.0
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 8.4e-44 181.8 288 46.9
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.4e-43 181.0 192 54.2
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.4e-43 181.0 192 54.2
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.9e-43 180.6 379 50.7
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.2e-43 179.9 195 55.4
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 4.1e-43 179.5 349 46.1
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 4.1e-43 179.5 347 41.2
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 4.6e-42 176.0 289 46.0
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.0e-41 174.9 327 49.5
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.3e-41 174.5 316 40.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 8.6e-41 171.8 317 42.3
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 5.6e-40 169.1 265 58.5
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 7.3e-40 168.7 329 52.0
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.4e-38 163.7 194 53.1
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.0e-38 162.9 196 50.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 7.6e-37 158.7 197 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 2.2e-36 157.1 199 51.3
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.9e-36 156.8 341 38.1
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 4.9e-36 156.0 197 48.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.2e-34 151.4 256 43.0
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.1e-34 150.6 287 44.6
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.7e-34 150.2 287 44.3
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 7.8e-34 148.7 164 54.3
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 7.8e-34 148.7 82 98.8
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 5.1e-33 146.0 195 48.7
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 6.6e-33 145.6 287 43.6
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.1e-32 144.8 211 46.0
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.9e-32 144.1 168 50.0
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.4e-30 137.9 319 36.7
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 4.0e-30 136.3 228 43.0
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 5.4e-27 125.9 147 53.7
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 5.6e-24 115.9 332 34.3
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 2.0e-21 107.5 136 47.8
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 4.9e-20 102.8 117 57.3
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 6.7e-17 92.4 188 39.9
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 4.3e-16 89.7 145 40.7
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 9.6e-16 88.6 191 38.7
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 4.8e-15 86.3 97 54.6
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 9.3e-11 72.0 127 39.4
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.8e-09 67.8 191 33.5
Zm00001eb060930 Zea mays HOM05D004913 ORTHO05D006150 1.3e-07 61.6 54 66.7
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 6.9e-06 55.8 96 45.8


User provided reference genes

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