Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 5.5e-228 793.9 383 100.0
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.5e-119 433.7 373 57.1
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 1.9e-119 433.3 354 59.6
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 4.2e-119 432.2 355 59.4
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 8.0e-118 427.9 355 58.9
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 8.8e-117 424.5 361 56.8
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.1e-116 424.1 385 55.1
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.1e-116 424.1 358 58.1
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 2.0e-116 423.3 361 56.5
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 5.7e-116 421.8 360 57.8
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 5.7e-116 421.8 382 55.2
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 7.5e-116 421.4 361 56.8
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 7.5e-116 421.4 364 57.1
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 9.7e-116 421.0 362 57.7
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 3.7e-115 419.1 366 57.7
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 3.7e-115 419.1 356 57.0
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.1e-114 417.5 356 58.7
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 4.1e-114 415.6 372 55.6
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 1.2e-113 414.1 365 56.4
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 2.0e-113 413.3 371 55.5
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 3.5e-113 412.5 358 56.7
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 3.5e-113 412.5 368 55.4
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 4.5e-113 412.1 356 56.2
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 5.9e-113 411.8 383 53.8
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 7.7e-113 411.4 386 52.1
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 7.7e-113 411.4 369 54.7
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.0e-112 411.0 359 56.0
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 2.9e-112 409.5 381 54.9
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 2.9e-112 409.5 357 56.6
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.1e-111 407.5 350 57.4
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 1.1e-111 407.5 359 56.5
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 1.1e-111 407.5 380 53.4
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.9e-111 406.8 405 50.4
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 1.9e-111 406.8 358 56.7
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.2e-111 406.0 350 57.4
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 5.5e-111 405.2 377 53.3
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 7.2e-111 404.8 373 53.6
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 1.2e-110 404.1 383 53.0
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.2e-110 404.1 360 54.4
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 2.1e-110 403.3 349 54.2
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 2.7e-110 402.9 382 52.6
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 3.6e-110 402.5 363 52.3
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 4.7e-110 402.1 382 53.4
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 6.1e-110 401.7 371 55.0
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 8.0e-110 401.4 391 51.2
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 1.0e-109 401.0 392 52.8
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 3.0e-109 399.4 352 53.7
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 3.0e-109 399.4 352 53.7
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 5.2e-109 398.7 360 53.1
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 5.2e-109 398.7 353 53.8
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 6.8e-109 398.3 365 53.7
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 8.8e-109 397.9 384 51.8
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 1.2e-108 397.5 399 50.6
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 1.5e-108 397.1 380 50.3
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 2.6e-108 396.4 371 52.3
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 5.7e-108 395.2 383 51.7
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 5.7e-108 395.2 377 53.6
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.7e-107 393.7 361 51.8
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 1.7e-107 393.7 361 51.8
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 1.7e-107 393.7 369 54.7
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.7e-107 393.7 359 52.6
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 1.1e-106 391.0 355 53.0
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 1.8e-106 390.2 361 55.1
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 2.4e-106 389.8 368 52.7
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 2.4e-106 389.8 364 53.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 2.0e-105 386.7 369 53.1
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 2.0e-105 386.7 360 52.5
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 4.5e-105 385.6 365 53.2
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 5.9e-105 385.2 360 51.9
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 5.9e-105 385.2 354 52.8
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 7.7e-105 384.8 370 52.7
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 1.0e-104 384.4 365 53.2
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 5.0e-104 382.1 356 52.2
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 5.0e-104 382.1 362 52.8
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 5.0e-104 382.1 363 53.2
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 5.0e-104 382.1 431 47.8
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 6.5e-104 381.7 406 48.0
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 1.9e-103 380.2 369 52.0
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 1.9e-103 380.2 357 54.3
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.9e-103 380.2 388 51.0
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 1.2e-102 377.5 404 48.5
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.6e-102 377.1 364 52.5
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 2.1e-102 376.7 410 48.0
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 2.1e-102 376.7 411 48.7
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 6.8e-101 371.7 383 48.8
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 1.3e-99 367.5 369 51.8
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 3.7e-99 365.9 325 55.4
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 6.3e-99 365.2 315 58.1
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.9e-96 356.3 383 48.8
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.1e-94 350.1 383 48.0
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 6.1e-94 348.6 249 71.1
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 1.3e-91 340.9 365 47.9
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 3.7e-91 339.3 375 47.2
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.0e-88 331.3 367 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.0e-88 331.3 365 46.6
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.1e-87 327.8 357 45.1
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 8.0e-86 321.6 404 43.1
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 5.2e-85 318.9 256 61.3
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.2e-84 317.8 269 57.2
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 1.2e-84 317.8 453 39.3
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 1.9e-82 310.5 278 56.5
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 3.5e-81 306.2 249 59.0
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.9e-79 300.4 351 47.3
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 3.2e-66 256.5 198 62.6
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 7.6e-60 235.3 257 50.2
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.4e-53 214.5 242 47.5
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 1.7e-51 207.6 414 34.1
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 3.1e-45 186.8 352 33.5
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.1e-42 178.3 229 39.3
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 5.1e-40 169.5 294 36.4
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 2.1e-38 164.1 359 35.4
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.9e-34 151.0 149 55.0
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.5e-34 150.6 149 55.0
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 1.7e-27 127.9 234 38.0
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.1e-23 115.2 207 36.7
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 1.1e-21 108.6 380 26.1
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 1.7e-19 101.3 91 49.5
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.4e-12 77.0 83 50.6
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 7.7e-12 75.9 78 56.4
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 8.8e-08 62.4 105 34.3
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.8e-06 57.4 65 50.8


User provided reference genes

Program Settings