Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 5.7e-83 310.8 153 100.0
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.1e-73 280.0 151 89.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 2.6e-72 275.4 153 91.5
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.5e-59 233.0 154 76.0
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 5.3e-57 224.6 154 73.4
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.9e-54 216.1 155 73.5
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.9e-54 216.1 154 73.4
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.9e-54 216.1 154 73.4
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.5e-54 215.7 155 73.5
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 9.4e-54 213.8 154 72.7
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.7e-53 212.2 155 72.3
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.6e-53 211.8 139 75.5
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.7e-53 211.5 139 74.8
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 4.7e-53 211.5 133 77.4
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 8.0e-53 210.7 154 70.1
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.0e-52 210.3 136 74.3
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.8e-52 209.5 141 73.8
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.0e-52 208.8 159 69.2
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 5.2e-52 208.0 153 69.3
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 8.8e-52 207.2 131 79.4
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.2e-51 206.8 153 69.3
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.0e-51 206.1 157 70.1
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.0e-51 206.1 127 77.2
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.6e-51 205.7 127 77.2
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.4e-51 205.3 158 70.9
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 3.4e-51 205.3 158 69.0
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 9.8e-51 203.8 157 69.4
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 9.8e-51 203.8 127 76.4
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.3e-50 203.4 153 68.6
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.3e-50 203.4 153 69.3
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.3e-50 203.4 153 71.2
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.3e-50 203.4 127 78.0
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.7e-50 203.0 141 70.9
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.8e-50 202.2 131 76.3
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.7e-50 201.8 155 68.4
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.1e-49 200.3 145 71.0
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.1e-49 200.3 156 69.2
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.4e-49 199.9 158 67.7
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.4e-49 199.9 132 73.5
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 1.8e-49 199.5 128 77.3
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.8e-49 199.5 148 69.6
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.8e-49 199.5 141 70.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 2.4e-49 199.1 139 70.5
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 2.4e-49 199.1 146 71.9
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 2.4e-49 199.1 146 71.9
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.4e-49 199.1 155 69.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 4.1e-49 198.4 156 68.6
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.1e-49 198.4 149 70.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 4.1e-49 198.4 146 71.9
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.4e-49 198.0 133 73.7
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.4e-49 198.0 141 69.5
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 7.0e-49 197.6 133 73.7
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.0e-49 197.6 133 73.7
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 9.1e-49 197.2 127 74.8
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.6e-48 196.4 155 67.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.6e-48 196.4 139 70.5
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.0e-48 196.1 154 66.2
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.7e-48 195.7 123 76.4
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 4.5e-48 194.9 139 69.1
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.5e-48 194.9 153 66.0
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 5.9e-48 194.5 154 66.2
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 5.9e-48 194.5 143 69.9
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.9e-48 194.5 161 66.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.9e-48 194.5 153 67.3
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 7.7e-48 194.1 143 68.5
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 7.7e-48 194.1 143 68.5
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 7.7e-48 194.1 158 65.8
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.0e-47 193.7 147 69.4
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.0e-47 193.7 159 65.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-47 193.4 126 74.6
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.3e-47 193.4 143 69.9
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.7e-47 193.0 124 78.2
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.7e-47 193.0 157 67.5
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 2.2e-47 192.6 144 66.7
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 2.9e-47 192.2 129 72.9
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.8e-47 191.8 140 68.6
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.0e-47 191.4 162 66.0
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 5.0e-47 191.4 139 68.3
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-46 190.3 151 66.2
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-46 190.3 162 65.4
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.1e-46 190.3 158 63.9
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.1e-46 190.3 125 72.0
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 2.5e-46 189.1 139 68.3
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 3.2e-46 188.7 148 69.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.5e-46 188.0 175 60.0
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 5.5e-46 188.0 155 65.2
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.2e-45 186.8 143 66.4
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.2e-45 186.8 157 65.0
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.6e-45 186.4 157 65.6
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.1e-45 186.0 157 64.3
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.0e-45 184.1 158 62.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.0e-45 184.1 155 65.2
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.8e-44 183.0 150 66.7
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.3e-44 182.6 154 64.9
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.3e-44 182.6 157 63.1
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.0e-43 179.5 119 73.9
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.6e-43 179.1 148 64.2
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 2.6e-43 179.1 150 62.7
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.4e-43 178.7 148 64.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 4.4e-43 178.3 140 67.1
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.4e-43 178.3 152 63.8
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.7e-43 177.9 130 66.9
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 7.5e-43 177.6 122 69.7
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 7.5e-43 177.6 156 64.1
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 9.8e-43 177.2 118 72.9
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 9.8e-43 177.2 135 65.9
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.8e-42 175.6 155 61.9
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.9e-42 174.9 116 73.3
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 8.3e-42 174.1 147 64.6
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.1e-41 172.2 138 63.8
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.1e-41 172.2 116 72.4
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.1e-41 171.8 119 70.6
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.2e-41 170.6 178 54.5
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.2e-40 170.2 118 71.2
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-40 169.9 158 62.7
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-40 169.9 158 62.7
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.7e-40 169.1 115 72.2
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 5.9e-40 167.9 142 64.1
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 5.9e-40 167.9 115 73.9
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 7.7e-40 167.5 122 68.0
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 7.7e-40 167.5 106 79.2
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.7e-40 167.5 149 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.0e-39 167.2 148 63.5
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.9e-39 165.6 157 58.6
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.1e-38 163.7 149 61.1
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 9.5e-38 160.6 106 75.5
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 9.5e-38 160.6 105 76.2
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 9.5e-38 160.6 104 77.9
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.1e-37 159.5 120 65.8
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 3.6e-37 158.7 118 64.4
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.4e-36 156.8 101 74.3
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.3e-36 156.0 203 48.3
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.0e-36 155.2 197 49.2
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 8.9e-36 154.1 110 71.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-35 153.7 133 61.7
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-35 153.7 133 61.7
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 5.7e-35 151.4 127 66.1
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 7.5e-35 151.0 155 53.5
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 9.8e-35 150.6 125 63.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.8e-35 150.6 133 60.9
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 9.8e-35 150.6 138 60.9
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.2e-33 145.6 147 58.5
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 7.0e-33 144.4 118 62.7
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.2e-32 143.7 118 64.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.9e-32 141.4 127 59.1
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.3e-31 140.2 95 73.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.6e-27 125.9 61 96.7
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 3.7e-26 122.1 107 60.7
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 6.0e-24 114.8 76 78.9
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.1e-22 110.5 132 49.2
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 7.3e-22 107.8 125 45.6
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.8e-21 105.9 58 84.5
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 3.6e-21 105.5 84 66.7
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.8e-20 103.2 97 59.8
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 2.3e-20 102.8 60 83.3
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 2.2e-18 96.3 75 64.0
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.9e-18 95.9 128 52.3
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 6.4e-18 94.7 74 68.9
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.9e-17 93.2 75 62.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 5.4e-17 91.7 75 61.3
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-12 77.4 45 75.6
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.8e-12 76.6 148 35.8
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 5.2e-12 75.1 132 37.1
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 3.4e-11 72.4 120 41.7
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.0e-07 59.3 39 66.7


User provided reference genes

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