Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 7.9e-222 773.5 391 100.0
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 2.7e-169 599.0 389 78.4
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 3.6e-126 455.7 405 59.5
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 1.8e-125 453.4 407 58.5
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 9.9e-124 447.6 405 58.0
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 2.2e-123 446.4 415 56.1
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 1.4e-122 443.7 405 57.5
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 1.6e-121 440.3 407 57.7
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 2.7e-121 439.5 387 57.9
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 2.7e-121 439.5 387 57.9
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 6.0e-121 438.3 398 57.3
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 7.9e-121 438.0 382 58.6
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 1.7e-120 436.8 404 57.7
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 1.7e-120 436.8 405 55.3
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 2.3e-120 436.4 412 55.3
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 3.0e-120 436.0 410 55.9
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 5.1e-120 435.3 420 56.4
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 5.1e-120 435.3 404 59.2
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 6.6e-120 434.9 391 57.8
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.1e-119 434.1 421 53.9
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 1.5e-119 433.7 393 57.5
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 1.5e-119 433.7 415 54.7
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 1.9e-119 433.3 388 57.7
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 2.5e-119 433.0 419 54.7
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 3.3e-119 432.6 405 55.1
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 3.3e-119 432.6 382 58.1
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 3.3e-119 432.6 393 57.3
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 4.3e-119 432.2 403 56.1
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 5.6e-119 431.8 413 55.9
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 2.1e-118 429.9 410 56.3
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 2.8e-118 429.5 412 55.3
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 3.6e-118 429.1 410 56.1
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 4.8e-118 428.7 372 58.3
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 1.1e-117 427.6 403 55.8
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 3.1e-117 426.0 413 54.2
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 3.1e-117 426.0 413 55.9
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 3.1e-117 426.0 413 55.7
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 6.9e-117 424.9 416 57.7
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.2e-116 424.1 419 56.1
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 3.4e-116 422.5 411 54.3
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 4.5e-116 422.2 416 53.6
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 4.5e-116 422.2 423 53.9
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 5.8e-116 421.8 411 53.8
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 1.7e-115 420.2 400 56.0
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.7e-115 420.2 417 54.4
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 2.2e-115 419.9 390 57.2
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 3.8e-115 419.1 406 55.7
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 4.9e-115 418.7 406 55.9
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 8.4e-115 417.9 396 54.5
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 8.4e-115 417.9 381 55.6
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 1.1e-114 417.5 414 53.9
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 1.9e-114 416.8 417 53.0
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.2e-114 416.0 401 54.9
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 2.1e-113 413.3 380 55.3
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 2.1e-113 413.3 418 53.8
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 2.7e-113 412.9 394 54.8
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 2.7e-113 412.9 408 53.2
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 3.5e-113 412.5 393 54.5
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 3.5e-113 412.5 411 53.5
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 4.6e-113 412.1 391 55.5
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 6.0e-113 411.8 406 52.2
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 1.8e-112 410.2 418 52.2
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 2.3e-112 409.8 406 53.7
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 2.3e-112 409.8 397 55.7
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 3.0e-112 409.5 436 52.1
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 3.9e-112 409.1 394 54.3
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 5.1e-112 408.7 418 53.6
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 1.5e-111 407.1 449 50.6
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 1.5e-111 407.1 385 55.1
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 1.9e-111 406.8 412 53.2
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 4.3e-111 405.6 413 52.5
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 4.3e-111 405.6 391 55.8
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 9.6e-111 404.4 418 53.1
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 9.6e-111 404.4 430 52.6
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 3.1e-109 399.4 391 54.2
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 1.0e-107 394.4 434 50.2
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.0e-107 394.4 336 59.5
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 1.7e-107 393.7 451 48.8
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 2.9e-107 392.9 378 55.6
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 4.9e-107 392.1 411 52.1
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 1.4e-106 390.6 376 53.7
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 1.4e-106 390.6 443 48.8
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 1.9e-106 390.2 426 51.2
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 4.2e-106 389.0 364 56.0
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 5.5e-106 388.7 431 49.2
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 9.3e-106 387.9 364 55.8
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 4.6e-105 385.6 390 52.6
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 1.3e-104 384.0 403 51.9
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 2.8e-102 376.3 373 54.4
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 1.4e-101 374.0 418 50.7
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 1.2e-100 370.9 375 54.4
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 3.8e-99 365.9 415 48.9
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 5.5e-98 362.1 397 49.4
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 6.1e-97 358.6 397 49.9
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 7.9e-97 358.2 371 50.9
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 1.0e-96 357.8 395 49.4
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 3.0e-96 356.3 397 49.4
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 8.2e-94 348.2 415 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 3.0e-88 329.7 393 46.6
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.5e-87 326.6 391 47.3
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.5e-87 326.6 315 55.6
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.8e-85 320.5 482 41.1
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 5.3e-85 318.9 486 39.9
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 3.2e-82 309.7 250 63.2
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 1.4e-80 304.3 387 43.4
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 2.6e-79 300.1 350 48.6
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 3.5e-76 289.7 235 63.0
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 6.5e-75 285.4 265 55.8
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 1.1e-74 284.6 407 43.0
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 6.5e-67 258.8 279 50.2
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 1.5e-50 204.5 242 43.4
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 1.2e-39 168.3 316 32.3
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 1.0e-35 155.2 288 35.8
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 6.6e-35 152.5 116 60.3
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 8.9e-32 142.1 217 41.5
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.2e-28 131.7 97 66.0
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 5.6e-26 122.9 65 81.5
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 2.8e-25 120.6 115 55.7
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 6.9e-16 89.4 85 61.2
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 6.9e-08 62.8 122 34.4


User provided reference genes

Program Settings