Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 9.1e-53 209.9 102 100.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.2e-39 166.4 83 95.2
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.0e-31 139.0 78 85.9
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 7.0e-21 104.0 68 73.5
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.0e-17 90.5 72 56.9
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.3e-16 89.0 72 54.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.0e-16 88.2 72 52.8
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 4.0e-16 88.2 71 56.3
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.8e-16 87.4 71 54.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.8e-16 87.4 71 54.9
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.8e-16 87.4 71 54.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.8e-16 87.4 75 52.0
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.2e-15 86.7 71 56.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.5e-15 86.3 71 54.9
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.5e-15 86.3 71 54.9
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.0e-15 85.9 71 54.9
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 2.0e-15 85.9 71 56.3
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.6e-15 85.5 71 56.3
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 2.6e-15 85.5 71 56.3
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.6e-15 85.5 72 52.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.4e-15 85.1 71 54.9
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.4e-15 84.7 72 51.4
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.4e-15 84.7 75 50.7
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 4.4e-15 84.7 71 53.5
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 4.4e-15 84.7 71 53.5
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.4e-15 84.7 71 53.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 4.4e-15 84.7 71 53.5
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.8e-15 84.3 72 51.4
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 52.1
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 52.1
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 52.1
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 53.5
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 53.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 53.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.8e-15 84.3 71 53.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.5e-15 84.0 70 55.7
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.5e-15 84.0 71 53.5
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.5e-15 84.0 71 50.7
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 7.5e-15 84.0 72 52.8
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 9.8e-15 83.6 71 53.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.8e-15 83.6 71 52.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 9.8e-15 83.6 71 53.5
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 9.8e-15 83.6 72 50.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.3e-14 83.2 71 53.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.3e-14 83.2 72 52.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.3e-14 83.2 72 52.8
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.3e-14 83.2 71 52.1
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.3e-14 83.2 71 52.1
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.3e-14 83.2 72 51.4
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.3e-14 83.2 71 52.1
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.3e-14 83.2 72 51.4
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 50.7
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 50.7
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.7e-14 82.8 70 54.3
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.7e-14 82.8 70 54.3
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 52.1
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 52.1
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 52.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 52.1
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 53.5
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 52.1
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.7e-14 82.8 71 52.1
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.2e-14 82.4 72 50.0
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.9e-14 82.0 71 52.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.9e-14 82.0 71 49.3
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 3.7e-14 81.6 71 52.1
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 3.7e-14 81.6 72 50.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.7e-14 81.6 72 50.0
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.7e-14 81.6 71 52.1
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 3.7e-14 81.6 71 52.1
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 3.7e-14 81.6 75 48.0
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.7e-14 81.6 72 50.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 3.7e-14 81.6 71 52.1
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.9e-14 81.3 71 50.7
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.9e-14 81.3 71 50.7
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.9e-14 81.3 71 50.7
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.9e-14 81.3 71 52.1
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 4.9e-14 81.3 71 52.1
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 6.4e-14 80.9 71 52.1
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 6.4e-14 80.9 71 52.1
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 6.4e-14 80.9 71 52.1
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 6.4e-14 80.9 71 52.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 8.3e-14 80.5 71 49.3
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 8.3e-14 80.5 71 49.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.1e-13 80.1 71 47.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.1e-13 80.1 71 50.7
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-13 80.1 71 50.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.4e-13 79.7 71 50.7
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.4e-13 79.7 71 50.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.4e-13 79.7 71 50.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.4e-13 79.7 71 50.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-13 79.7 71 50.7
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.4e-13 79.7 71 50.7
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.8e-13 79.3 71 49.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.8e-13 79.3 71 49.3
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.8e-13 79.3 71 50.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.8e-13 79.3 71 50.7
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.4e-13 79.0 71 47.9
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.4e-13 79.0 72 48.6
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.4e-13 79.0 71 46.5
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 2.4e-13 79.0 71 46.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 2.4e-13 79.0 71 49.3
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.4e-13 79.0 71 50.7
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 3.2e-13 78.6 71 49.3
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 3.2e-13 78.6 71 49.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.2e-13 78.6 71 49.3
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 4.1e-13 78.2 71 49.3
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.1e-13 78.2 71 49.3
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.1e-13 78.2 71 49.3
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.1e-13 78.2 71 49.3
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 5.4e-13 77.8 71 49.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.0e-13 77.4 71 47.9
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 9.2e-13 77.0 71 47.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 9.2e-13 77.0 71 49.3
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.2e-12 76.6 71 49.3
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.2e-12 76.6 72 44.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.2e-12 76.6 70 50.0
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.0e-12 75.9 71 49.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.5e-12 75.1 72 50.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.5e-12 75.1 71 47.9
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.0e-12 74.3 70 47.1
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 7.8e-12 73.9 72 44.4
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.0e-11 73.6 72 44.4
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.3e-11 73.2 71 47.9
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.7e-11 72.8 71 46.5
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.9e-11 71.6 72 44.4
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 5.0e-11 71.2 72 48.6
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.3e-10 68.6 72 40.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.3e-08 62.4 71 36.6
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.6e-07 58.9 48 52.1
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.5e-07 57.4 52 46.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.5e-07 57.4 68 39.7
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 9.8e-07 57.0 62 43.5
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.9e-06 55.5 83 32.5
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.9e-06 54.7 68 38.2


User provided reference genes

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