Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb197340 Zea mays HOM05D001065 ORTHO05D003103 6.0e-163 577.4 283 100.0
Zm00001eb206120 Zea mays HOM05D001065 ORTHO05D003103 1.5e-36 157.5 109 74.3
Zm00001eb197350 Zea mays HOM05D001065 ORTHO05D003103 1.1e-31 141.4 67 97.0
Zm00001eb359880 Zea mays HOM05D001065 ORTHO05D003103 2.1e-27 127.1 92 69.6
Os02g0194000 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D003103 1.3e-24 117.9 109 56.9
Nitab4.5_0001756g0010 Nicotiana tabacum HOM05D001065 ORTHO05D003103 3.4e-17 93.2 110 50.0
CAN.G1330.12 Capsicum annuum HOM05D001065 ORTHO05D003103 5.0e-16 89.4 106 50.9
Migut.N02988 Erythranthe guttata HOM05D001065 ORTHO05D003103 6.5e-16 89.0 167 38.9
Gohir.A05G177500 Gossypium hirsutum HOM05D001065 ORTHO05D003103 6.5e-16 89.0 104 47.1
Gohir.D05G180900 Gossypium hirsutum HOM05D001065 ORTHO05D003103 8.5e-16 88.6 104 47.1
Gorai.009G185900 Gossypium raimondii HOM05D001065 ORTHO05D003103 8.5e-16 88.6 104 47.1
HPP92_013560 Vanilla planifolia HOM05D001065 ORTHO05D003103 3.2e-15 86.7 117 46.2
COL.COLO4_12297 Corchorus olitorius HOM05D001065 ORTHO05D003103 5.5e-15 85.9 100 46.0
Duzib116G0376 Durio zibethinus HOM05D001065 ORTHO05D003103 7.2e-15 85.5 104 46.2
Atru.chr13.59 Acer truncatum HOM05D001065 ORTHO05D003103 9.4e-15 85.1 114 46.5
EL10Ac1g01870 Beta vulgaris HOM05D001065 ORTHO05D003103 9.4e-15 85.1 153 41.2
MBI01_g28403_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D003103 9.4e-15 85.1 113 47.8
Thecc.08G099700 Theobroma cacao HOM05D001065 ORTHO05D003103 9.4e-15 85.1 104 44.2
HanXRQChr09g0241911 Helianthus annuus HOM05D001065 ORTHO05D003103 1.2e-14 84.7 115 42.6
SalBow6G3244 Salvia bowleyana HOM05D001065 ORTHO05D003103 1.2e-14 84.7 106 47.2
ClCG11G019090 Citrullus lanatus HOM05D001065 ORTHO05D003103 1.6e-14 84.3 118 44.9
Dinv29376 Davidia involucrata HOM05D001065 ORTHO05D003103 1.6e-14 84.3 119 42.0
Eucgr.F01821 Eucalyptus grandis HOM05D001065 ORTHO05D003103 1.6e-14 84.3 123 41.5
GSVIVG01013428001 Vitis vinifera HOM05D001065 ORTHO05D003103 1.6e-14 84.3 119 42.9
MSTRG.24517 Avicennia marina HOM05D001065 ORTHO05D003103 2.1e-14 84.0 110 47.3
CsaV3_4G037680 Cucumis sativus L. HOM05D001065 ORTHO05D003103 2.1e-14 84.0 125 42.4
MBI02_g15366_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.7e-14 83.6 117 47.0
CiPaw.07G133400 Carya illinoinensis HOM05D001065 ORTHO05D003103 3.6e-14 83.2 118 42.4
Cc10_g00250 Coffea canephora HOM05D001065 ORTHO05D003103 3.6e-14 83.2 112 44.6
Peaxi162Scf00385g00010 Petunia axillaris HOM05D001065 ORTHO05D003103 3.6e-14 83.2 150 39.3
Zm00001eb359890 Zea mays HOM05D001065 ORTHO05D003103 3.6e-14 83.2 43 95.3
AT2G33610 Arabidopsis thaliana HOM05D001065 ORTHO05D003103 4.6e-14 82.8 118 42.4
MELO3C017062.2 Cucumis melo HOM05D001065 ORTHO05D003103 4.6e-14 82.8 123 42.3
CANSAT78G2419 Cannabis sativa HOM05D001065 ORTHO05D003103 6.1e-14 82.4 118 40.7
Dinv13759 Davidia involucrata HOM05D001065 ORTHO05D003103 6.1e-14 82.4 119 42.0
TAR376G1201 Trochodendron aralioides HOM05D001065 ORTHO05D003103 6.1e-14 82.4 126 42.9
Lsat_1_v5_gn_9_48340 Lactuca sativa HOM05D001065 ORTHO05D003103 7.9e-14 82.0 108 43.5
Lj4A811T124 Lonicera japonica HOM05D001065 ORTHO05D003103 1.0e-13 81.6 124 40.3
Sc15g0004060 Simmondsia chinensis HOM05D001065 ORTHO05D003103 1.0e-13 81.6 118 42.4
Solyc04g082760.3 Solanum lycopersicum HOM05D001065 ORTHO05D003103 1.0e-13 81.6 104 47.1
arahy.Tifrunner.gnm1.ann1.L2XFJE Arachis hypogaea HOM05D001065 ORTHO05D003103 1.4e-13 81.3 124 41.1
arahy.Tifrunner.gnm1.ann1.W4A4ZK Arachis hypogaea HOM05D001065 ORTHO05D003103 1.4e-13 81.3 124 41.1
Sopen04g036400 Solanum pennellii HOM05D001065 ORTHO05D003103 1.4e-13 81.3 104 47.1
PGSC0003DMG400009998 Solanum tuberosum HOM05D001065 ORTHO05D003103 1.4e-13 81.3 104 47.1
SGA_v2.0_scaffold227G43162 Striga asiatica HOM05D001065 ORTHO05D003103 1.4e-13 81.3 110 46.4
unitig_578.g16240 Utricularia gibba HOM05D001065 ORTHO05D003103 1.4e-13 81.3 107 45.8
Duzib041G0437 Durio zibethinus HOM05D001065 ORTHO05D003103 2.3e-13 80.5 104 47.1
Oeu039085.1 Olea europaea HOM05D001065 ORTHO05D003103 2.3e-13 80.5 103 44.7
Hma1.2p1_0489F.1_g164120 Hydrangea macrophylla HOM05D001065 ORTHO05D003103 3.0e-13 80.1 123 42.3
Sed0018640 Sechium edule HOM05D001065 ORTHO05D003103 3.9e-13 79.7 119 42.9
Aa31LG9G13540 Aethionema arabicum HOM05D001065 ORTHO05D003103 5.1e-13 79.3 119 40.3
Lj1g0025049 Lotus japonicus HOM05D001065 ORTHO05D003103 5.1e-13 79.3 116 40.5
Sabra02G0003200 Salix brachista HOM05D001065 ORTHO05D003103 5.1e-13 79.3 170 33.5
Sp4g15960 Schrenkiella parvula HOM05D001065 ORTHO05D003103 5.1e-13 79.3 118 40.7
Manes.18G001900 Manihot esculenta HOM05D001065 ORTHO05D003103 6.7e-13 79.0 123 38.2
Nn6g31623 Nelumbo nucifera HOM05D001065 ORTHO05D003103 6.7e-13 79.0 126 39.7
Phvul.009G008500 Phaseolus vulgaris HOM05D001065 ORTHO05D003103 6.7e-13 79.0 122 40.2
PGR083G0789 Punica granatum HOM05D001065 ORTHO05D003103 6.7e-13 79.0 119 38.7
Hund01833 Selenicereus undatus HOM05D001065 ORTHO05D003103 6.7e-13 79.0 118 43.2
VMungo1309G2971 Vigna mungo HOM05D001065 ORTHO05D003103 6.7e-13 79.0 128 38.3
Thhalv10016607m.g Eutrema salsugineum HOM05D001065 ORTHO05D003103 8.8e-13 78.6 123 38.2
MD05G1344100 Malus domestica HOM05D001065 ORTHO05D003103 8.8e-13 78.6 114 43.0
Actinidia17078 Actinidia chinensis HOM05D001065 ORTHO05D003103 1.1e-12 78.2 123 38.2
Ciclev10001069m.g Citrus clementina HOM05D001065 ORTHO05D003103 1.1e-12 78.2 124 37.9
ECA232G0657 Erigeron canadensis HOM05D001065 ORTHO05D003103 1.1e-12 78.2 111 43.2
QL02p015747 Quercus lobata HOM05D001065 ORTHO05D003103 1.1e-12 78.2 119 40.3
TWI36G1461 Tripterygium wilfordii HOM05D001065 ORTHO05D003103 1.1e-12 78.2 119 40.3
Cpa.g.sc26.13 Carica papaya HOM05D001065 ORTHO05D003103 1.5e-12 77.8 114 43.9
CARHR127630 Cardamine hirsuta HOM05D001065 ORTHO05D003103 2.0e-12 77.4 118 39.8
CDE05G0552 Ceratophyllum demersum HOM05D001065 ORTHO05D003103 2.0e-12 77.4 121 39.7
Potri.002G004800 Populus trichocarpa HOM05D001065 ORTHO05D003103 2.0e-12 77.4 125 40.0
CSS0037280 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D003103 2.5e-12 77.0 123 41.5
Haze_22864 Corylus avellana HOM05D001065 ORTHO05D003103 2.5e-12 77.0 115 41.7
TPR.G38238 Trifolium pratense HOM05D001065 ORTHO05D003103 2.5e-12 77.0 126 41.3
Carub.0004s1524 Capsella rubella HOM05D001065 ORTHO05D003103 3.3e-12 76.6 118 39.0
DCAR_023022 Daucus carota HOM05D001065 ORTHO05D003103 3.3e-12 76.6 118 39.0
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 4.3e-12 76.3 119 39.5
Ca_15384_v3 Cicer arietinum L. HOM05D001065 ORTHO05D003103 4.3e-12 76.3 126 40.5
FvH4_3g02280 Fragaria vesca HOM05D001065 ORTHO05D003103 4.3e-12 76.3 118 43.2
FAN21G0065 Fragaria x ananassa HOM05D001065 ORTHO05D003103 4.3e-12 76.3 117 42.7
FAN21G0171 Fragaria x ananassa HOM05D001065 ORTHO05D003103 4.3e-12 76.3 117 42.7
FAN25G2536 Fragaria x ananassa HOM05D001065 ORTHO05D003103 4.3e-12 76.3 117 42.7
Aqoxy7G04038 Aquilegia oxysepala HOM05D001065 ORTHO05D003103 7.4e-12 75.5 114 39.5
Psat5g008520 Pisum sativum HOM05D001065 ORTHO05D003103 7.4e-12 75.5 126 41.3
AUR62024095 Chenopodium quinoa HOM05D001065 ORTHO05D003103 1.3e-11 74.7 115 41.7
MD00G1206800 Malus domestica HOM05D001065 ORTHO05D003103 1.3e-11 74.7 124 38.7
MD10G1320100 Malus domestica HOM05D001065 ORTHO05D003103 1.3e-11 74.7 124 38.7
THA.LOC104806869 Tarenaya hassleriana HOM05D001065 ORTHO05D003103 1.7e-11 74.3 118 39.8
BcaB06g28706 Brassica carinata HOM05D001065 ORTHO05D003103 2.8e-11 73.6 120 39.2
A04p25870 Brassica napus HOM05D000236 ORTHO05D003103 2.8e-11 73.6 120 39.2
C04p63140 Brassica napus HOM05D001065 ORTHO05D003103 2.8e-11 73.6 120 38.3
BolC4t27786H Brassica oleracea HOM05D001065 ORTHO05D003103 2.8e-11 73.6 120 38.3
Glyma.04G014400 Glycine max HOM05D001065 ORTHO05D003103 2.8e-11 73.6 124 39.5
RcHm_v2.0_Chr5g0003401 Rosa chinensis HOM05D001065 ORTHO05D003103 2.8e-11 73.6 113 42.5
BcaC02g07806 Brassica carinata HOM05D001065 ORTHO05D003103 3.7e-11 73.2 120 40.0
BraA04t18089Z Brassica rapa HOM05D001065 ORTHO05D003103 3.7e-11 73.2 120 39.2
Lalb_Chr11g0061371 Lupinus albus HOM05D001065 ORTHO05D003103 3.7e-11 73.2 120 36.7
Medtr3g116120 Medicago truncatula HOM05D001065 ORTHO05D003103 3.7e-11 73.2 126 39.7
Actinidia15525 Actinidia chinensis HOM05D001065 ORTHO05D003103 4.8e-11 72.8 123 36.6
AL4G29280 Arabidopsis lyrata HOM05D001065 ORTHO05D003103 4.8e-11 72.8 118 39.0
PSO675G0227 Papaver somniferum HOM05D001065 ORTHO05D003103 4.8e-11 72.8 119 43.7
Prupe.4G022300 Prunus persica HOM05D001065 ORTHO05D003103 4.8e-11 72.8 127 36.2
Glyma.06G014400 Glycine max HOM05D001065 ORTHO05D003103 6.3e-11 72.4 124 38.7
PSO541G2552 Papaver somniferum HOM05D001065 ORTHO05D003103 6.3e-11 72.4 119 41.2
SGA_v2.0_scaffold220G42645 Striga asiatica HOM05D001065 ORTHO05D003103 6.3e-11 72.4 44 70.5
Prupe.5G005400 Prunus persica HOM05D001065 ORTHO05D003103 1.1e-10 71.6 158 34.2
AUR62035171 Chenopodium quinoa HOM05D001065 ORTHO05D003103 1.8e-10 70.9 115 40.9
ATR0605G189 Amborella trichopoda HOM05D001065 ORTHO05D003103 4.1e-10 69.7 110 41.8
Medtr5g085170 Medicago truncatula HOM05D001065 ORTHO05D003103 1.5e-09 67.8 107 42.1
Rhsim06G0003100 Rhododendron simsii HOM05D001065 ORTHO05D003103 1.5e-09 67.8 123 35.8
SHI07950 Sapria himalayana HOM05D001065 ORTHO05D003103 1.9e-07 60.8 102 41.2
vmacro21766 Vaccinium macrocarpon HOM05D001065 ORTHO05D003103 3.2e-07 60.1 52 51.9
Medtr6g053260 Medicago truncatula HOM05D000007 ORTHO05D003103 9.4e-07 58.5 40 57.5


User provided reference genes

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