Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.9e-56 222.6 145 100.0
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.6e-55 219.5 145 98.6
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 4.7e-55 218.0 145 97.9
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 3.1e-54 215.3 145 96.6
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.2e-53 213.4 145 94.5
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 4.3e-48 194.9 135 95.6
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.1e-42 176.0 145 77.9
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.4e-30 136.7 71 95.8
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.9e-27 126.3 145 60.7
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.9e-27 126.3 145 60.7
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.5e-26 122.1 134 62.7
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 4.6e-26 121.7 126 67.5
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 3.0e-25 119.0 126 67.5
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 8.7e-25 117.5 129 62.8
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 8.7e-25 117.5 129 62.8
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 5.6e-24 114.8 136 61.0
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 5.6e-24 114.8 133 52.6
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 5.6e-24 114.8 133 61.7
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 7.4e-24 114.4 126 62.7
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 9.6e-24 114.0 135 59.3
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.6e-23 113.2 133 60.2
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 2.1e-23 112.8 128 62.5
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.1e-23 112.8 126 66.7
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 2.8e-23 112.5 126 65.1
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.7e-23 112.1 126 65.9
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 4.8e-23 111.7 128 61.7
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 4.8e-23 111.7 128 41.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 6.2e-23 111.3 127 64.6
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 8.2e-23 110.9 142 57.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 8.2e-23 110.9 130 61.5
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 8.2e-23 110.9 129 50.4
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.1e-22 110.5 134 58.2
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.4e-22 110.2 129 49.6
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.4e-22 110.2 128 61.7
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.4e-22 110.2 137 56.9
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.8e-22 109.8 130 60.8
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 2.4e-22 109.4 135 54.8
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 4.0e-22 108.6 131 56.5
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 5.3e-22 108.2 128 57.8
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 5.3e-22 108.2 86 51.2
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 5.3e-22 108.2 131 57.3
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 5.3e-22 108.2 130 58.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 9.0e-22 107.5 87 48.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 9.0e-22 107.5 131 57.3
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.2e-21 107.1 88 48.9
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.2e-21 107.1 133 59.4
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.5e-21 106.7 131 58.0
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.5e-21 106.7 80 55.0
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-21 106.7 135 58.5
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-21 106.7 135 58.5
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.5e-21 106.7 135 58.5
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 2.0e-21 106.3 79 57.0
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.0e-21 106.3 138 54.3
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 3.4e-21 105.5 130 59.2
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 3.4e-21 105.5 135 57.8
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.4e-21 105.5 135 57.0
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.5e-21 105.1 135 57.0
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.5e-21 105.1 128 59.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 4.5e-21 105.1 130 56.9
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 5.8e-21 104.8 128 57.0
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 7.6e-21 104.4 138 54.3
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 7.6e-21 104.4 129 58.9
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 7.6e-21 104.4 128 59.4
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 7.6e-21 104.4 124 60.5
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.0e-20 104.0 85 51.8
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.3e-20 103.6 128 58.6
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.3e-20 103.6 130 53.8
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.3e-20 103.6 137 54.0
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.3e-20 103.6 128 56.2
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.7e-20 103.2 131 56.5
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 1.7e-20 103.2 126 47.6
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 2.2e-20 102.8 125 61.6
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.9e-20 102.4 128 54.7
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.8e-20 102.1 128 55.5
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 3.8e-20 102.1 130 54.6
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 4.9e-20 101.7 129 56.6
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 4.9e-20 101.7 133 54.9
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 6.5e-20 101.3 128 55.5
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 8.4e-20 100.9 128 53.1
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.1e-19 100.5 131 56.5
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.1e-19 100.5 133 57.9
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.4e-19 100.1 139 57.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.9e-19 99.8 120 60.8
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 3.2e-19 99.0 131 55.0
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 3.2e-19 99.0 131 50.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 4.2e-19 98.6 131 57.3
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 4.2e-19 98.6 129 61.2
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 7.1e-19 97.8 113 57.5
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.2e-18 97.1 129 51.9
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.6e-18 96.7 128 53.9
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.7e-18 95.9 125 58.4
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 3.5e-18 95.5 113 56.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.6e-18 95.1 125 57.6
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.6e-18 95.1 125 57.6
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 6.0e-18 94.7 117 60.7
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 6.0e-18 94.7 125 58.4
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.8e-17 93.2 133 50.4
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 3.0e-17 92.4 80 47.5
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 3.9e-17 92.0 125 55.2
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 3.9e-17 92.0 124 56.5
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 8.7e-17 90.9 81 44.4
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 4.3e-16 88.6 135 46.7
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 2.2e-15 86.3 115 54.8
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 3.7e-15 85.5 129 52.7
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 6.3e-15 84.7 114 58.8
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.1e-14 84.0 128 50.8
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.8e-14 83.2 131 29.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.4e-14 82.8 134 38.8
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 2.4e-14 82.8 127 52.0
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 5.3e-14 81.6 134 28.4
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 5.0e-12 75.1 115 33.0
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.1e-10 69.7 95 63.2
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.0e-09 67.4 99 60.6
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 6.7e-09 64.7 94 40.4
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.1e-08 63.9 117 27.4
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.1e-08 63.9 117 27.4
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.1e-08 63.9 117 27.4
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 2.5e-08 62.8 121 26.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.3e-08 62.4 119 26.1
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 3.3e-08 62.4 117 26.5
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 3.3e-08 62.4 117 26.5
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 5.7e-08 61.6 121 45.5
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 2.2e-07 59.7 121 43.8
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 1.1e-06 57.4 94 48.9
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.4e-06 56.2 59 39.0


User provided reference genes

Program Settings