Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 2.1e-76 289.3 178 100.0
Zm00001eb234650 Zea mays HOM05D003400 ORTHO05D003687 1.4e-21 107.1 173 43.9
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 5.7e-18 95.1 87 59.8
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 9.1e-16 87.8 86 54.7
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 2.0e-15 86.7 87 54.0
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 5.9e-15 85.1 91 53.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.7e-15 84.7 88 51.1
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.7e-15 84.7 88 51.1
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 7.7e-15 84.7 83 54.2
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 7.7e-15 84.7 125 44.8
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 7.7e-15 84.7 88 54.5
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.0e-14 84.3 87 51.7
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 1.0e-14 84.3 88 51.1
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.0e-14 84.3 88 52.3
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.0e-14 84.3 87 52.9
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.0e-14 84.3 88 52.3
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.0e-14 84.3 87 52.9
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.3e-14 84.0 88 52.3
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.3e-14 84.0 88 52.3
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.3e-14 84.0 88 52.3
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.3e-14 84.0 88 54.5
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 1.7e-14 83.6 89 53.9
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 1.7e-14 83.6 88 54.5
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.2e-14 83.2 87 51.7
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 2.2e-14 83.2 87 51.7
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.2e-14 83.2 88 52.3
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 2.2e-14 83.2 88 52.3
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.9e-14 82.8 87 50.6
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.9e-14 82.8 88 53.4
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 2.9e-14 82.8 89 52.8
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 2.9e-14 82.8 88 52.3
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 3.8e-14 82.4 88 53.4
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 3.8e-14 82.4 87 50.6
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 3.8e-14 82.4 88 52.3
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 5.0e-14 82.0 87 50.6
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 53.4
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 5.0e-14 82.0 87 50.6
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 51.1
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 52.3
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 52.3
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 5.0e-14 82.0 88 54.5
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 6.5e-14 81.6 87 50.6
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 6.5e-14 81.6 78 55.1
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 6.5e-14 81.6 88 52.3
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 6.5e-14 81.6 88 51.1
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 6.5e-14 81.6 78 55.1
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 6.5e-14 81.6 83 53.0
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 6.5e-14 81.6 88 51.1
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.5e-14 81.3 86 52.3
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.5e-14 81.3 86 52.3
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 8.5e-14 81.3 88 53.4
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 8.5e-14 81.3 78 55.1
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 8.5e-14 81.3 78 55.1
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 8.5e-14 81.3 78 55.1
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 8.5e-14 81.3 78 55.1
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 8.5e-14 81.3 78 55.1
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.1e-13 80.9 88 51.1
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.1e-13 80.9 87 50.6
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.1e-13 80.9 88 50.0
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 1.1e-13 80.9 79 53.2
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.1e-13 80.9 88 52.3
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.4e-13 80.5 87 49.4
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.4e-13 80.5 88 50.0
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.4e-13 80.5 87 50.6
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 1.9e-13 80.1 88 52.3
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.9e-13 80.1 87 51.7
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.5e-13 79.7 83 49.4
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.5e-13 79.7 83 49.4
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 2.5e-13 79.7 88 51.1
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.5e-13 79.7 86 48.8
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 2.5e-13 79.7 80 53.8
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 2.5e-13 79.7 93 50.5
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.5e-13 79.7 86 50.0
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 3.2e-13 79.3 88 51.1
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.2e-13 79.3 88 48.9
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.2e-13 79.3 83 51.8
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.2e-13 79.3 88 51.1
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.2e-13 79.3 88 51.1
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.2e-13 79.3 88 51.1
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 4.2e-13 79.0 78 53.8
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 4.2e-13 79.0 83 48.2
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 4.2e-13 79.0 89 51.7
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.2e-13 79.0 84 51.2
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 4.2e-13 79.0 88 48.9
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 4.2e-13 79.0 88 48.9
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 4.2e-13 79.0 89 51.7
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 5.5e-13 78.6 87 48.3
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 5.5e-13 78.6 79 54.4
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 5.5e-13 78.6 88 47.7
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.5e-13 78.6 78 52.6
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 7.2e-13 78.2 88 51.1
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 7.2e-13 78.2 78 52.6
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 7.2e-13 78.2 83 49.4
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.2e-13 78.2 88 52.3
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 7.2e-13 78.2 78 52.6
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 9.4e-13 77.8 88 48.9
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 9.4e-13 77.8 78 51.3
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 9.4e-13 77.8 78 52.6
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 9.4e-13 77.8 80 50.0
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 9.4e-13 77.8 78 53.8
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 9.4e-13 77.8 78 52.6
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 9.4e-13 77.8 78 52.6
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.2e-12 77.4 91 48.4
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 1.2e-12 77.4 79 50.6
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.2e-12 77.4 78 52.6
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.2e-12 77.4 87 50.6
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.2e-12 77.4 78 51.3
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.6e-12 77.0 83 50.6
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 2.1e-12 76.6 90 50.0
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.1e-12 76.6 90 47.8
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 2.7e-12 76.3 78 50.0
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.7e-12 76.3 78 51.3
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 3.6e-12 75.9 83 49.4
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.6e-12 75.9 107 43.9
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 4.7e-12 75.5 77 50.6
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 4.7e-12 75.5 99 44.4
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 4.7e-12 75.5 75 53.3
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 6.1e-12 75.1 86 51.2
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 8.0e-12 74.7 76 51.3
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.0e-11 74.3 37 91.9
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 1.4e-11 73.9 76 52.6
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.8e-11 73.6 74 51.4
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.8e-11 73.6 76 52.6
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.3e-11 73.2 84 47.6
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 5.2e-11 72.0 92 46.7
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.2e-11 72.0 80 47.5
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 8.8e-11 71.2 78 47.4
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.1e-10 70.9 77 49.4
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 2.0e-10 70.1 75 50.7
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 2.0e-10 70.1 38 86.8
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.6e-10 69.7 85 43.5
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 3.3e-10 69.3 74 48.6
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 3.3e-10 69.3 74 48.6
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 3.3e-10 69.3 74 48.6
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 3.3e-10 69.3 74 48.6
Zm00001eb378920 Zea mays HOM05D000904 ORTHO05D005281 7.4e-10 68.2 38 86.8
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 9.7e-10 67.8 76 47.4
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 4.8e-09 65.5 78 44.9
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.4e-08 63.9 38 78.9
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 7.0e-08 61.6 42 71.4
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 9.1e-08 61.2 91 37.4
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 2.0e-07 60.1 70 47.1
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 2.0e-07 60.1 67 47.8
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.9e-07 58.5 32 75.0
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.0e-06 57.8 85 42.4
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.3e-06 57.4 37 67.6
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.7e-06 57.0 31 74.2
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.8e-06 55.8 32 68.8
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 3.8e-06 55.8 45 57.8
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 8.5e-06 54.7 67 44.8


User provided reference genes

Program Settings