Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb189990 Zea mays HOM05D003397 ORTHO05D004390 4.3e-89 331.3 161 100.0
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 4.3e-89 331.3 161 100.0
Zm00001eb367400 Zea mays HOM05D003397 ORTHO05D004390 4.3e-89 331.3 161 100.0
Zm00001eb028920 Zea mays HOM05D003397 ORTHO05D004390 7.3e-89 330.5 161 99.4
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 3.2e-84 315.1 161 92.5
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 4.7e-80 301.2 161 87.6
Dinv44744 Davidia involucrata HOM05D003397 ORTHO05D004390 3.1e-79 298.5 161 87.6
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 6.8e-79 297.4 161 86.3
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 8.9e-79 297.0 161 85.1
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 2.6e-78 295.4 161 85.1
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 2.6e-78 295.4 161 85.7
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 7.5e-78 293.9 161 85.7
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 7.5e-78 293.9 161 86.3
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 7.5e-78 293.9 161 86.3
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 9.9e-78 293.5 161 85.7
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 1.3e-77 293.1 161 85.1
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.7e-77 292.7 161 84.5
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 1.7e-77 292.7 161 83.9
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 2.2e-77 292.4 161 85.1
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 2.9e-77 292.0 161 85.1
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 3.7e-77 291.6 161 85.1
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 3.7e-77 291.6 161 85.7
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 3.7e-77 291.6 161 83.9
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 4.9e-77 291.2 161 83.9
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 4.9e-77 291.2 161 84.5
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 6.4e-77 290.8 161 84.5
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 6.4e-77 290.8 161 84.5
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 8.3e-77 290.4 161 84.5
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 1.1e-76 290.0 161 85.7
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 1.1e-76 290.0 161 85.1
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 1.1e-76 290.0 161 84.5
Zm00001eb086560 Zea mays HOM05D003397 ORTHO05D004390 1.1e-76 290.0 161 83.9
DCAR_013178 Daucus carota HOM05D003397 ORTHO05D004390 1.4e-76 289.7 161 86.3
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 1.9e-76 289.3 161 85.7
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 2.4e-76 288.9 161 83.9
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.4e-76 288.9 161 83.9
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 3.2e-76 288.5 161 84.5
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 4.1e-76 288.1 161 85.1
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 5.4e-76 287.7 161 83.2
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 5.4e-76 287.7 161 83.2
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 7.1e-76 287.3 161 82.6
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 7.1e-76 287.3 161 83.2
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 9.2e-76 287.0 161 82.6
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 9.2e-76 287.0 161 83.9
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 9.2e-76 287.0 161 83.9
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 1.2e-75 286.6 161 83.2
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 1.2e-75 286.6 161 84.5
Zm00001eb419400 Zea mays HOM05D003397 ORTHO05D004390 1.2e-75 286.6 161 83.9
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 1.6e-75 286.2 161 85.1
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 2.1e-75 285.8 162 84.0
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 2.1e-75 285.8 161 83.2
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 2.1e-75 285.8 161 84.5
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 2.1e-75 285.8 161 86.3
COL.COLO4_16461 Corchorus olitorius HOM05D003397 ORTHO05D004390 2.7e-75 285.4 161 83.2
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.7e-75 285.4 161 83.2
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.7e-75 285.4 161 83.2
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 2.7e-75 285.4 161 84.5
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 2.7e-75 285.4 161 83.9
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 3.5e-75 285.0 161 82.0
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 3.5e-75 285.0 161 83.9
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 3.5e-75 285.0 161 84.5
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 3.5e-75 285.0 161 84.5
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 3.5e-75 285.0 161 83.2
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 4.6e-75 284.6 161 82.6
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 4.6e-75 284.6 161 83.2
Manes.02G155501 Manihot esculenta HOM05D003397 ORTHO05D004390 4.6e-75 284.6 161 83.9
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 4.6e-75 284.6 161 85.1
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 6.0e-75 284.3 161 81.4
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 6.0e-75 284.3 161 81.4
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 6.0e-75 284.3 161 83.2
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 6.0e-75 284.3 161 83.9
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 7.8e-75 283.9 161 81.4
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 7.8e-75 283.9 161 81.4
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 7.8e-75 283.9 161 83.2
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 7.8e-75 283.9 161 83.2
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 1.0e-74 283.5 161 82.6
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 1.0e-74 283.5 161 83.9
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.0e-74 283.5 161 82.0
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 1.0e-74 283.5 161 82.0
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 1.0e-74 283.5 161 83.9
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 1.0e-74 283.5 161 83.2
Thhalv10003506m.g Eutrema salsugineum HOM05D003397 ORTHO05D004390 1.3e-74 283.1 161 81.4
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 1.7e-74 282.7 161 82.6
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 1.7e-74 282.7 161 80.7
TAR625G0333 Trochodendron aralioides HOM05D003397 ORTHO05D004390 1.7e-74 282.7 161 82.6
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 2.3e-74 282.3 161 80.7
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 2.3e-74 282.3 161 80.7
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.3e-74 282.3 161 82.6
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 2.3e-74 282.3 161 83.2
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 2.3e-74 282.3 161 82.6
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 2.3e-74 282.3 161 83.9
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 3.0e-74 282.0 161 82.0
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 3.0e-74 282.0 161 82.0
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 3.0e-74 282.0 161 81.4
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 3.0e-74 282.0 161 81.4
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 3.9e-74 281.6 161 82.6
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 3.9e-74 281.6 161 83.2
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 5.1e-74 281.2 161 81.4
ClCG03G009000 Citrullus lanatus HOM05D003397 ORTHO05D004390 6.6e-74 280.8 161 81.4
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 6.6e-74 280.8 161 81.4
Carub.0001s3360 Capsella rubella HOM05D003397 ORTHO05D004390 8.6e-74 280.4 161 80.7
CAN.G12.31 Capsicum annuum HOM05D003397 ORTHO05D004390 1.1e-73 280.0 161 80.1
Gohir.A01G186501 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.1e-73 280.0 161 83.2
Gohir.A01G186651 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.1e-73 280.0 161 83.2
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 1.1e-73 280.0 161 81.4
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 1.1e-73 280.0 161 81.4
Cpa.g.sc66.90 Carica papaya HOM05D003397 ORTHO05D004390 1.5e-73 279.6 161 81.4
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 1.5e-73 279.6 161 81.4
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 1.5e-73 279.6 161 80.7
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.5e-73 278.9 161 80.7
Gohir.A05G268100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 3.3e-73 278.5 161 80.7
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 4.3e-73 278.1 161 81.4
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 4.3e-73 278.1 161 81.4
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 4.3e-73 278.1 161 80.7
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 4.3e-73 278.1 161 82.6
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 5.6e-73 277.7 161 80.7
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 5.6e-73 277.7 161 83.2
BcaC08g43005 Brassica carinata HOM05D003397 ORTHO05D004390 1.2e-72 276.6 161 78.9
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 1.2e-72 276.6 161 78.9
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 2.1e-72 275.8 161 80.1
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 4.7e-72 274.6 161 80.7
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 8.1e-72 273.9 161 80.7
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 1.1e-71 273.5 161 78.9
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 1.4e-71 273.1 161 82.0
BolC6t35373H Brassica oleracea HOM05D003397 ORTHO05D004390 2.4e-71 272.3 161 78.3
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 3.1e-71 271.9 163 78.5
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 3.1e-71 271.9 161 79.5
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 5.2e-71 271.2 161 80.1
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 6.8e-71 270.8 163 77.9
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 8.9e-71 270.4 161 79.5
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 1.2e-70 270.0 189 71.4
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 5.8e-70 267.7 161 79.5
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 1.7e-69 266.2 161 79.5
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 1.4e-68 263.1 161 77.0
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 2.1e-67 259.2 161 78.3
SMO336G0042 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 8.6e-66 253.8 163 75.5
SMO347G0105 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 8.6e-66 253.8 163 75.5
AagrBONN_evm.TU.Sc2ySwM_228.4168 Anthoceros agrestis HOM05D003397 ORTHO05D004390 1.1e-65 253.4 161 77.6
Hund17528 Selenicereus undatus HOM05D003397 ORTHO05D004390 1.1e-65 253.4 161 77.0
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 1.6e-64 249.6 161 74.5
CBR_g21136 Chara braunii HOM05D003397 ORTHO05D004390 1.9e-60 236.1 160 71.2
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 1.2e-59 233.4 151 72.8
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 1.7e-58 229.6 127 84.3
Cre08.g373050 Chlamydomonas reinhardtii HOM05D003397 ORTHO05D004390 4.2e-44 181.8 187 50.3
Psat4g213440 Pisum sativum HOM05D003397 ORTHO05D004390 2.3e-42 176.0 111 73.9
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 1.3e-40 170.2 162 53.7
PRCOL_00006044 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 1.5e-38 163.3 160 52.5
MCO01G438 Micromonas commoda HOM05D003397 ORTHO05D004390 2.0e-38 162.9 161 52.2
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 4.9e-37 158.3 164 50.6
CARHR034870 Cardamine hirsuta HOM05D003397 ORTHO05D004390 3.1e-31 139.0 81 77.8
CARHR034890 Cardamine hirsuta HOM05D003397 ORTHO05D004390 2.9e-29 132.5 80 73.8
Psat4g123920 Pisum sativum HOM05D003397 ORTHO05D004390 1.0e-26 124.0 92 70.7
Actinidia33155 Actinidia chinensis HOM05D003397 ORTHO05D004390 6.7e-26 121.3 112 56.2
PRCOL_00001984 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 7.2e-20 101.3 268 30.6
CARHR283620 Cardamine hirsuta HOM05D003397 ORTHO05D004390 1.1e-15 87.4 43 95.3
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.0e-13 80.9 38 100.0


User provided reference genes

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