Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb187830 Zea mays HOM05D003092 ORTHO05D015679 3.0e-47 191.4 93 100.0
Zm00001eb339140 Zea mays HOM05D003092 ORTHO05D015679 1.7e-42 175.6 93 91.4
Zm00001eb307840 Zea mays HOM05D003092 ORTHO05D015679 2.3e-34 148.7 100 78.0
Zm00001eb093190 Zea mays HOM05D003092 ORTHO05D015679 2.2e-29 132.1 84 79.8
Zm00001eb430840 Zea mays HOM05D003092 ORTHO05D003977 1.1e-28 129.8 66 90.9
Zm00001eb070860 Zea mays HOM05D003092 ORTHO05D003977 5.4e-28 127.5 66 89.4
Zm00001eb134040 Zea mays HOM05D003092 ORTHO05D015679 3.5e-27 124.8 81 77.8
Os04g0614600 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.5e-25 119.4 60 88.3
Dinv18426 Davidia involucrata HOM05D003092 ORTHO05D003977 5.6e-25 117.5 59 88.1
Nn7g38238 Nelumbo nucifera HOM05D003092 ORTHO05D003977 5.6e-25 117.5 60 85.0
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 9.5e-25 116.7 66 80.3
Manes.08G069100 Manihot esculenta HOM05D003092 ORTHO05D003977 1.6e-24 115.9 59 86.4
Potri.016G018500 Populus trichocarpa HOM05D003092 ORTHO05D003977 1.6e-24 115.9 66 78.8
Zm00001eb171190 Zea mays HOM05D003092 ORTHO05D003977 1.6e-24 115.9 66 77.3
MBI18_g11470_MAGBIO Magnolia biondii HOM05D003092 ORTHO05D003977 2.1e-24 115.5 59 86.4
ATR0752G155 Amborella trichopoda HOM05D003092 ORTHO05D003977 2.8e-24 115.2 66 75.8
Duzib138G1254 Durio zibethinus HOM05D003092 ORTHO05D003977 2.8e-24 115.2 66 78.8
Prupe.3G186500 Prunus persica HOM05D003092 ORTHO05D003977 2.8e-24 115.2 66 78.8
CiPaw.04G073100 Carya illinoinensis HOM05D003092 ORTHO05D003977 3.6e-24 114.8 66 78.8
Ciclev10011509m.g Citrus clementina HOM05D003092 ORTHO05D003977 3.6e-24 114.8 59 84.7
ECA238G0264 Erigeron canadensis HOM05D003092 ORTHO05D003977 3.6e-24 114.8 66 77.3
Eucgr.K01341 Eucalyptus grandis HOM05D003092 ORTHO05D003977 3.6e-24 114.8 58 87.9
PSO541G1731 Papaver somniferum HOM05D003092 ORTHO05D003977 3.6e-24 114.8 66 78.8
PSO675G5899 Papaver somniferum HOM05D003092 ORTHO05D003977 3.6e-24 114.8 66 78.8
QL04p061990 Quercus lobata HOM05D003092 ORTHO05D003977 3.6e-24 114.8 66 77.3
Sabra06G0014400 Salix brachista HOM05D003092 ORTHO05D003977 3.6e-24 114.8 66 77.3
Potri.006G020900 Populus trichocarpa HOM05D003092 ORTHO05D003977 4.7e-24 114.4 66 77.3
Atru.chr8.993 Acer truncatum HOM05D003092 ORTHO05D003977 6.2e-24 114.0 59 84.7
CDE06G0430 Ceratophyllum demersum HOM05D003092 ORTHO05D003977 6.2e-24 114.0 66 75.8
Haze_13641 Corylus avellana HOM05D003092 ORTHO05D003977 6.2e-24 114.0 66 77.3
Gohir.D11G163100 Gossypium hirsutum HOM05D003092 ORTHO05D003977 6.2e-24 114.0 59 84.7
Gorai.007G173800 Gossypium raimondii HOM05D003092 ORTHO05D003977 6.2e-24 114.0 59 84.7
PGR142G2785 Punica granatum HOM05D003092 ORTHO05D003977 6.2e-24 114.0 66 75.8
MSTRG.14878 Avicennia marina HOM05D003092 ORTHO05D003977 8.1e-24 113.6 66 77.3
Duzib133G0324 Durio zibethinus HOM05D003092 ORTHO05D003977 8.1e-24 113.6 59 84.7
Sed0028086 Sechium edule HOM05D003092 ORTHO05D003977 8.1e-24 113.6 59 84.7
Dinv24691 Davidia involucrata HOM05D003092 ORTHO05D003977 1.1e-23 113.2 59 84.7
Hma1.2p1_0758F.1_g213520 Hydrangea macrophylla HOM05D003092 ORTHO05D003977 1.1e-23 113.2 59 84.7
Os04g0614500 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.1e-23 113.2 66 78.8
Sabra16G0020500 Salix brachista HOM05D003092 ORTHO05D003977 1.1e-23 113.2 66 75.8
HPP92_014204 Vanilla planifolia HOM05D003092 ORTHO05D003977 1.1e-23 113.2 66 75.8
HPP92_026462 Vanilla planifolia HOM05D003092 ORTHO05D003977 1.1e-23 113.2 66 75.8
Os08g0205900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.4e-23 112.8 66 74.2
CANSAT64G1584 Cannabis sativa HOM05D003092 ORTHO05D003977 1.8e-23 112.5 66 75.8
Migut.M00096 Erythranthe guttata HOM05D003092 ORTHO05D003977 1.8e-23 112.5 66 77.3
Gohir.A11G156000 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.3e-23 112.1 59 83.1
Lsat_1_v5_gn_2_64281 Lactuca sativa HOM05D003092 ORTHO05D003977 2.3e-23 112.1 66 77.3
Sabra16G0025300 Salix brachista HOM05D003092 ORTHO05D003977 2.3e-23 112.1 66 77.3
ClCG07G010930 Citrullus lanatus HOM05D003092 ORTHO05D003977 3.1e-23 111.7 66 77.3
Glyma.11G096200 Glycine max HOM05D003092 ORTHO05D003977 3.1e-23 111.7 58 86.2
Rhsim04G0084500 Rhododendron simsii HOM05D003092 ORTHO05D003977 3.1e-23 111.7 59 83.1
Zm00001eb091810 Zea mays HOM05D003092 ORTHO05D015679 3.1e-23 111.7 91 63.7
Cfa023523 Carpinus fangiana HOM05D003092 ORTHO05D003977 4.0e-23 111.3 66 75.8
MD17G1128700 Malus domestica HOM05D003092 ORTHO05D003977 4.0e-23 111.3 66 75.8
Thecc.01G172800 Theobroma cacao HOM05D003092 ORTHO05D003977 4.0e-23 111.3 66 74.2
arahy.Tifrunner.gnm1.ann1.IE54UT Arachis hypogaea HOM05D003092 ORTHO05D003977 5.2e-23 110.9 59 81.4
arahy.Tifrunner.gnm1.ann1.K82IJI Arachis hypogaea HOM05D003092 ORTHO05D003977 5.2e-23 110.9 59 81.4
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 5.2e-23 110.9 60 83.3
Sed0024474 Sechium edule HOM05D003092 ORTHO05D003977 5.2e-23 110.9 58 84.5
SGA_v2.0_scaffold73G24428 Striga asiatica HOM05D003092 ORTHO05D003977 5.2e-23 110.9 60 80.0
CANSAT64G2744 Cannabis sativa HOM05D003092 ORTHO05D003977 6.8e-23 110.5 66 72.7
Cpa.g.sc8.291 Carica papaya HOM05D003092 ORTHO05D003977 6.8e-23 110.5 59 83.1
Lalb_Chr01g0001161 Lupinus albus HOM05D003092 ORTHO05D003977 6.8e-23 110.5 66 75.8
Glyma.12G022300 Glycine max HOM05D003092 ORTHO05D003977 8.9e-23 110.2 58 84.5
Peaxi162Scf00393g00517 Petunia axillaris HOM05D003092 ORTHO05D003977 8.9e-23 110.2 66 77.3
MD09G1139200 Malus domestica HOM05D003092 ORTHO05D003977 1.2e-22 109.8 66 74.2
Oeu021138.3 Olea europaea HOM05D003092 ORTHO05D003977 1.2e-22 109.8 60 80.0
TWI60G0778 Tripterygium wilfordii HOM05D003092 ORTHO05D003977 1.2e-22 109.8 58 84.5
TAR629G1309 Trochodendron aralioides HOM05D003092 ORTHO05D003977 1.2e-22 109.8 59 81.4
PGSC0003DMG400024275 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.5e-22 109.4 66 72.7
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 2.0e-22 109.0 60 81.7
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 2.0e-22 109.0 60 81.7
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 2.0e-22 109.0 60 81.7
CARHR098090 Cardamine hirsuta HOM05D003092 ORTHO05D003977 2.0e-22 109.0 66 75.8
Solyc12g006450.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 2.0e-22 109.0 66 71.2
Sopen12g002390 Solanum pennellii HOM05D003092 ORTHO05D003977 2.0e-22 109.0 66 71.2
Thhalv10020563m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 2.6e-22 108.6 66 75.8
Nitab4.5_0000170g0430 Nicotiana tabacum HOM05D003092 ORTHO05D003977 2.6e-22 108.6 66 74.2
Nitab4.5_0002015g0020 Nicotiana tabacum HOM05D003092 ORTHO05D003977 2.6e-22 108.6 66 72.7
Nitab4.5_0002232g0040 Nicotiana tabacum HOM05D003092 ORTHO05D003977 2.6e-22 108.6 66 74.2
Nitab4.5_0005023g0050 Nicotiana tabacum HOM05D003092 ORTHO05D003977 2.6e-22 108.6 66 72.7
SGA_v2.0_scaffold181G39738 Striga asiatica HOM05D003092 ORTHO05D003977 2.6e-22 108.6 60 78.3
MELO3C032583.2 Cucumis melo HOM05D003092 ORTHO05D003977 3.4e-22 108.2 59 83.1
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 3.4e-22 108.2 66 72.7
Psat7g179360 Pisum sativum HOM05D003092 ORTHO05D003977 3.4e-22 108.2 59 81.4
SalBow7G2525 Salvia bowleyana HOM05D003092 ORTHO05D003977 3.4e-22 108.2 66 74.2
Zm00001eb361930 Zea mays HOM05D003092 ORTHO05D015679 3.4e-22 108.2 91 62.6
DCAR_001912 Daucus carota HOM05D003092 ORTHO05D003977 5.8e-22 107.5 66 72.7
TAR629G1366 Trochodendron aralioides HOM05D003092 ORTHO05D003977 5.8e-22 107.5 59 78.0
Actinidia35161 Actinidia chinensis HOM05D003092 ORTHO05D003977 7.6e-22 107.1 66 72.7
AL3G36410 Arabidopsis lyrata HOM05D003092 ORTHO05D003977 7.6e-22 107.1 66 72.7
Cc05_g00030 Coffea canephora HOM05D003092 ORTHO05D003977 7.6e-22 107.1 66 71.2
CSS0021585 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 9.9e-22 106.7 59 79.7
CSS0037687 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 9.9e-22 106.7 59 79.7
CAN.G816.9 Capsicum annuum HOM05D003092 ORTHO05D003977 9.9e-22 106.7 66 71.2
Medtr4g076100 Medicago truncatula HOM05D003092 ORTHO05D003977 9.9e-22 106.7 59 83.1
Peaxi162Scf00047g02452 Petunia axillaris HOM05D003092 ORTHO05D003977 9.9e-22 106.7 58 79.3
Ah.03g147600 Amaranthus hybridus HOM05D003092 ORTHO05D003977 1.3e-21 106.3 58 77.6
MELO3C026404.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.3e-21 106.3 60 80.0
CsaV3_4G007370 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.3e-21 106.3 66 74.2
Thhalv10020531m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 1.3e-21 106.3 66 74.2
HanXRQChr08g0214751 Helianthus annuus HOM05D003092 ORTHO05D003977 1.3e-21 106.3 66 69.7
Sp3g20000 Schrenkiella parvula HOM05D003092 ORTHO05D003977 1.3e-21 106.3 60 80.0
TPR.G35755 Trifolium pratense HOM05D003092 ORTHO05D003977 1.3e-21 106.3 58 84.5
GSVIVG01015824001 Vitis vinifera HOM05D003092 ORTHO05D003977 1.3e-21 106.3 58 79.3
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 1.7e-21 105.9 60 80.0
Lj7C139T4 Lonicera japonica HOM05D003092 ORTHO05D003977 1.7e-21 105.9 60 76.7
Lj7C141T9 Lonicera japonica HOM05D003092 ORTHO05D003977 1.7e-21 105.9 60 76.7
Aa31LG9G2310 Aethionema arabicum HOM05D003092 ORTHO05D003977 2.2e-21 105.5 66 72.7
PGSC0003DMG400011754 Solanum tuberosum HOM05D003092 ORTHO05D003977 2.2e-21 105.5 66 71.2
VMungo1127G0189 Vigna mungo HOM05D003092 ORTHO05D003977 2.2e-21 105.5 58 81.0
Hund04375 Selenicereus undatus HOM05D003092 ORTHO05D003977 2.9e-21 105.1 66 71.2
THA.LOC104803008 Tarenaya hassleriana HOM05D003092 ORTHO05D003977 2.9e-21 105.1 59 79.7
Aa31LG8G8760 Aethionema arabicum HOM05D003092 ORTHO05D003977 3.7e-21 104.8 58 79.3
AT3G22200 Arabidopsis thaliana HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 72.7
CAN.G339.12 Capsicum annuum HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 72.7
FvH4_6g39530 Fragaria vesca HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 69.7
FAN02G3818 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 69.7
FAN09G3380 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 69.7
FAN14G1111 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 69.7
Phvul.011G024300 Phaseolus vulgaris HOM05D003092 ORTHO05D003977 3.7e-21 104.8 58 81.0
Solyc07g043310.3 Solanum lycopersicum HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 69.7
Sopen07g022870 Solanum pennellii HOM05D003092 ORTHO05D003977 3.7e-21 104.8 66 69.7
CAN.G352.66 Capsicum annuum HOM05D003092 ORTHO05D003977 4.9e-21 104.4 66 71.2
TPR.G21260 Trifolium pratense HOM05D003092 ORTHO05D003977 4.9e-21 104.4 59 78.0
RcHm_v2.0_Chr2g0153591 Rosa chinensis HOM05D003092 ORTHO05D003977 6.4e-21 104.0 66 71.2
GSVIVG01015821001 Vitis vinifera HOM05D003092 ORTHO05D003977 6.4e-21 104.0 59 76.3
BcaC05g28095 Brassica carinata HOM05D003092 ORTHO05D003977 8.4e-21 103.6 58 81.0
A05p26630 Brassica napus HOM05D003092 ORTHO05D003977 8.4e-21 103.6 58 81.0
C05p41220 Brassica napus HOM05D003092 ORTHO05D003977 8.4e-21 103.6 58 81.0
BolC5t32860H Brassica oleracea HOM05D003092 ORTHO05D003977 8.4e-21 103.6 58 81.0
BraA05t21538Z Brassica rapa HOM05D003092 ORTHO05D003977 8.4e-21 103.6 58 81.0
ECA233G1959 Erigeron canadensis HOM05D003092 ORTHO05D003977 8.4e-21 103.6 66 69.7
BcaB06g26322 Brassica carinata HOM05D003092 ORTHO05D003977 1.1e-20 103.2 58 81.0
Carub.0003s2237 Capsella rubella HOM05D003092 ORTHO05D003977 1.1e-20 103.2 60 78.3
AUR62003531 Chenopodium quinoa HOM05D003092 ORTHO05D003977 1.1e-20 103.2 66 71.2
Ca_11243_v3 Cicer arietinum L. HOM05D003092 ORTHO05D003977 1.1e-20 103.2 59 78.0
FAN05G2188 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.4e-20 102.8 58 75.9
Gorai.004G063100 Gossypium raimondii HOM05D003092 ORTHO05D003977 1.9e-20 102.4 66 68.2
Sc03g0006060 Simmondsia chinensis HOM05D003092 ORTHO05D003977 1.9e-20 102.4 66 69.7
CsaV3_4G032320 Cucumis sativus L. HOM05D003092 ORTHO05D003977 2.4e-20 102.1 60 76.7
Lj3g0000609 Lotus japonicus HOM05D003092 ORTHO05D003977 4.1e-20 101.3 58 81.0
Aqoxy1G01441_Aqoxy1G01442 Aquilegia oxysepala HOM05D003092 ORTHO05D003977 5.4e-20 100.9 66 69.7
A05p26600 Brassica napus HOM05D003092 ORTHO05D003977 5.4e-20 100.9 66 69.7
BraA05t21535Z Brassica rapa HOM05D003092 ORTHO05D003977 5.4e-20 100.9 66 69.7
AUR62003530 Chenopodium quinoa HOM05D003092 ORTHO05D003977 5.4e-20 100.9 59 74.6
FAN02G1300 Fragaria x ananassa HOM05D003092 ORTHO05D003977 5.4e-20 100.9 66 69.7
FAN14G2664 Fragaria x ananassa HOM05D003092 ORTHO05D003977 5.4e-20 100.9 66 69.7
Gohir.A08G051200 Gossypium hirsutum HOM05D003092 ORTHO05D003977 7.1e-20 100.5 66 66.7
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 7.1e-20 100.5 66 69.7
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 7.1e-20 100.5 66 69.7
Lsat_1_v5_gn_8_37700 Lactuca sativa HOM05D003092 ORTHO05D003977 9.2e-20 100.1 66 66.7
Medtr4g016770 Medicago truncatula HOM05D003092 ORTHO05D015679 9.2e-20 100.1 59 79.7
AUR62017844 Chenopodium quinoa HOM05D003092 ORTHO05D003977 1.2e-19 99.8 59 72.9
CsaV3_4G007380 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.2e-19 99.8 66 66.7
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.6e-19 99.4 66 68.2
MELO3C016238.2 Cucumis melo HOM05D003092 ORTHO05D003977 2.1e-19 99.0 66 66.7
Gohir.D08G060900 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.7e-19 98.6 66 66.7
BcaB06g26323 Brassica carinata HOM05D003092 ORTHO05D003977 3.5e-19 98.2 58 74.1
DCAR_029734 Daucus carota HOM05D003092 ORTHO05D003977 4.6e-19 97.8 66 68.2
QL04p061858 Quercus lobata HOM05D003092 ORTHO05D003977 6.0e-19 97.4 48 87.5
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 6.0e-19 97.4 60 70.0
Os02g0112900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 1.0e-18 96.7 66 71.2
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.7e-18 95.9 60 68.3
SMO115G0307 Selaginella moellendorffii HOM05D003092 ORTHO05D003977 3.0e-18 95.1 58 74.1
Mapoly0160s0020 Marchantia polymorpha HOM05D003092 ORTHO05D003977 5.1e-18 94.4 58 72.4
Glyma.03G057900 Glycine max HOM05D003092 ORTHO05D015679 6.6e-18 94.0 48 83.3
vmacro09169 Vaccinium macrocarpon HOM05D003092 ORTHO05D003977 1.1e-17 93.2 50 82.0
Lalb_Chr19g0139651 Lupinus albus HOM05D003092 ORTHO05D015679 7.3e-17 90.5 60 71.7
Pp3c1_32910 Physcomitrium patens HOM05D003092 ORTHO05D003977 9.6e-17 90.1 66 66.7
Glyma.19G055966 Glycine max HOM05D003092 ORTHO05D015679 1.2e-16 89.7 54 72.2
EL10Ac6g15348 Beta vulgaris HOM05D003092 ORTHO05D003977 4.7e-16 87.8 87 51.7
Lj1C1040T2 Lonicera japonica HOM05D003092 ORTHO05D003977 4.7e-16 87.8 66 68.2
Lalb_Chr19g0139631 Lupinus albus HOM05D003092 ORTHO05D003977 1.1e-15 86.7 59 67.8
Sed0019858 Sechium edule HOM05D003092 ORTHO05D003977 1.1e-15 86.7 73 60.3
AagrBONN_evm.TU.Sc2ySwM_368.2355 Anthoceros agrestis HOM05D003092 ORTHO05D003977 2.6e-14 82.0 58 65.5
Pp3c6_25350 Physcomitrium patens HOM05D003092 ORTHO05D003977 1.7e-13 79.3 66 56.1
CBR_g20310 Chara braunii HOM05D003092 ORTHO05D000301 3.2e-12 75.1 66 50.0
Lalb_Chr19g0139621 Lupinus albus HOM05D003092 ORTHO05D015679 4.2e-12 74.7 48 66.7
TPR.G16133 Trifolium pratense HOM05D003092 ORTHO05D003977 1.5e-09 66.2 68 51.5
PRCOL_00000335 Prasinoderma coloniale HOM05D003092 ORTHO05D003977 4.3e-09 64.7 65 53.8
Zm00001eb029790 Zea mays HOM05D008576 ORTHO05D000385 7.3e-09 63.9 50 70.0


User provided reference genes

Program Settings