Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 2.2e-87 325.5 153 100.0
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 8.3e-50 200.7 94 97.9
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 2.2e-47 192.6 157 61.1
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 3.8e-47 191.8 159 60.4
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.5e-46 189.9 161 59.6
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 5.5e-46 188.0 162 58.0
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 5.5e-46 188.0 162 58.0
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 7.2e-46 187.6 161 57.1
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 1.2e-45 186.8 161 56.5
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.2e-45 186.8 156 57.1
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 2.1e-45 186.0 161 55.9
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 2.1e-45 186.0 159 57.9
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 2.7e-45 185.7 155 56.8
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 2.7e-45 185.7 159 56.6
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 4.7e-45 184.9 157 57.3
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 4.7e-45 184.9 162 57.4
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 4.7e-45 184.9 156 59.0
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 4.7e-45 184.9 158 57.0
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 8.0e-45 184.1 151 58.9
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 1.4e-44 183.3 158 55.7
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 2.3e-44 182.6 161 54.7
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 2.3e-44 182.6 160 55.0
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.0e-44 182.2 153 58.2
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 4.0e-44 181.8 159 57.2
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 5.2e-44 181.4 161 54.7
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 6.8e-44 181.0 153 57.5
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 8.8e-44 180.6 153 57.5
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 1.2e-43 180.3 156 57.7
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.5e-43 179.9 159 56.6
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 2.6e-43 179.1 158 57.0
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 3.4e-43 178.7 161 53.4
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 3.4e-43 178.7 159 56.0
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 3.4e-43 178.7 162 54.9
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 3.4e-43 178.7 157 58.6
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 4.4e-43 178.3 160 55.6
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 5.7e-43 177.9 161 55.9
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 7.5e-43 177.6 150 57.3
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 1.7e-42 176.4 155 56.8
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 1.7e-42 176.4 189 50.3
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 4.9e-42 174.9 157 52.9
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 4.9e-42 174.9 152 57.9
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 6.3e-42 174.5 157 54.8
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.1e-41 173.7 152 56.6
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 1.4e-41 173.3 158 55.1
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 1.8e-41 172.9 159 56.0
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 4.1e-41 171.8 159 53.5
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 5.4e-41 171.4 161 54.0
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 7.0e-41 171.0 154 54.5
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 1.2e-40 170.2 159 54.7
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.6e-40 169.9 149 55.7
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 4.5e-40 168.3 155 53.5
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 5.9e-40 167.9 153 54.9
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 1.5e-38 163.3 80 88.8
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 4.3e-38 161.8 108 67.6
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.6e-37 159.8 159 51.6
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.4e-36 156.8 157 52.2
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 3.0e-36 155.6 137 56.9
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 2.0e-35 152.9 137 56.2
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 5.7e-35 151.4 154 51.3
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 1.3e-34 150.2 154 51.3
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 6.4e-34 147.9 172 43.6
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 8.3e-34 147.5 143 54.5
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.8e-33 146.4 132 54.5
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 2.4e-33 146.0 138 54.3
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 3.2e-33 145.6 128 57.0
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.4e-33 144.8 156 48.7
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 2.7e-32 142.5 127 54.3
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 3.5e-32 142.1 181 44.8
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 7.8e-32 141.0 125 58.4
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 6.6e-31 137.9 119 58.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 3.4e-27 125.6 134 47.8
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 2.4e-25 119.4 157 43.3
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 4.1e-25 118.6 109 47.7
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 9.2e-25 117.5 161 37.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.7e-24 115.9 85 61.2
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 3.0e-23 112.5 149 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 3.3e-22 109.0 187 35.3
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.4e-17 93.6 123 45.5
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 7.6e-11 71.2 78 53.8
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 2.9e-10 69.3 79 45.6
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.9e-07 58.9 93 35.5
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.9e-06 56.6 93 34.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 9.6e-06 54.3 88 34.1


User provided reference genes

Program Settings