Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 1.7e-111 406.0 203 100.0
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 2.2e-74 282.7 162 84.6
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.5e-70 269.2 162 82.7
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 6.2e-61 238.0 160 74.4
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 2.0e-59 233.0 191 59.7
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.7e-55 219.9 161 65.8
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.6e-53 213.4 160 64.4
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-53 212.6 158 65.2
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-53 212.6 158 65.2
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 2.8e-53 212.6 160 63.8
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 2.8e-53 212.6 160 63.8
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.8e-53 212.6 160 63.1
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 3.6e-53 212.2 160 62.5
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 4.8e-53 211.8 160 65.0
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 4.8e-53 211.8 160 65.0
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 6.2e-53 211.5 160 65.0
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 8.1e-53 211.1 160 61.9
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 8.1e-53 211.1 160 62.5
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 8.1e-53 211.1 157 64.3
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 1.1e-52 210.7 160 62.5
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.1e-52 210.7 172 59.9
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 1.1e-52 210.7 160 63.8
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.4e-52 210.3 158 65.8
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 1.4e-52 210.3 160 64.4
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.4e-52 210.3 160 63.8
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.4e-52 210.3 159 66.0
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.8e-52 209.9 160 62.5
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.4e-52 209.5 160 65.6
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 2.4e-52 209.5 160 63.8
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 2.4e-52 209.5 160 63.8
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.4e-52 209.5 159 64.2
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 2.4e-52 209.5 157 63.7
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 2.4e-52 209.5 157 64.3
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 2.4e-52 209.5 160 65.0
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.1e-52 209.1 160 63.1
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.1e-52 209.1 172 59.9
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.1e-52 209.1 172 59.9
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 4.0e-52 208.8 158 65.8
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 4.0e-52 208.8 160 63.1
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 4.0e-52 208.8 158 62.7
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 5.3e-52 208.4 160 63.8
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 5.3e-52 208.4 163 64.4
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 5.3e-52 208.4 158 65.2
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 5.3e-52 208.4 158 62.7
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.9e-52 208.0 158 63.9
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 6.9e-52 208.0 163 64.4
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 9.0e-52 207.6 160 63.8
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 9.0e-52 207.6 160 61.9
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 9.0e-52 207.6 158 64.6
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 9.0e-52 207.6 160 61.9
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.2e-51 207.2 158 65.2
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 1.2e-51 207.2 160 62.5
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 1.2e-51 207.2 157 63.7
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 1.2e-51 207.2 160 61.2
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 1.5e-51 206.8 160 62.5
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 1.5e-51 206.8 160 61.2
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.5e-51 206.8 160 63.1
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.5e-51 206.8 160 63.8
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.5e-51 206.8 158 65.2
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 2.6e-51 206.1 160 61.2
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 2.6e-51 206.1 160 61.9
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 2.6e-51 206.1 160 63.1
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 2.6e-51 206.1 158 62.7
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 5.8e-51 204.9 160 62.5
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 5.8e-51 204.9 160 61.9
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 7.6e-51 204.5 160 60.0
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 7.6e-51 204.5 160 61.9
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 9.9e-51 204.1 157 63.1
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 1.3e-50 203.8 158 62.0
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.3e-50 203.8 160 61.9
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.7e-50 203.4 158 62.7
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.2e-50 203.0 160 62.5
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 2.2e-50 203.0 158 63.9
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 2.9e-50 202.6 158 63.3
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 2.9e-50 202.6 158 62.0
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 3.8e-50 202.2 160 61.2
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 4.9e-50 201.8 158 63.3
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 4.9e-50 201.8 160 61.9
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 6.4e-50 201.4 158 62.7
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 8.4e-50 201.1 160 62.5
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 8.4e-50 201.1 157 62.4
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.1e-49 200.7 157 63.1
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 1.4e-49 200.3 160 62.5
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 1.4e-49 200.3 160 60.6
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 1.9e-49 199.9 158 62.7
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 1.9e-49 199.9 160 60.6
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 1.9e-49 199.9 157 63.1
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 3.2e-49 199.1 160 60.6
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 4.2e-49 198.7 158 60.8
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 4.2e-49 198.7 160 61.2
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 5.4e-49 198.4 164 60.4
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 7.1e-49 198.0 160 61.9
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 9.3e-49 197.6 172 57.6
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.2e-48 197.2 166 60.8
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.6e-48 196.8 159 63.5
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.1e-48 196.4 157 61.1
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 2.1e-48 196.4 158 60.8
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.1e-48 196.4 177 58.8
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 3.5e-48 195.7 157 62.4
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 3.5e-48 195.7 159 62.3
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 3.5e-48 195.7 176 57.4
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 4.6e-48 195.3 160 60.6
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 4.6e-48 195.3 157 61.8
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 4.6e-48 195.3 172 58.1
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 6.0e-48 194.9 158 58.9
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 7.9e-48 194.5 160 61.2
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 1.3e-47 193.7 157 59.9
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.7e-47 193.4 157 59.9
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 1.7e-47 193.4 157 60.5
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 1.7e-47 193.4 157 60.5
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 2.3e-47 193.0 157 59.9
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 2.3e-47 193.0 160 60.6
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 2.3e-47 193.0 160 57.5
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 3.9e-47 192.2 157 60.5
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 5.1e-47 191.8 164 58.5
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 6.6e-47 191.4 157 59.9
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 6.6e-47 191.4 157 59.9
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 6.6e-47 191.4 161 59.0
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 8.7e-47 191.0 169 57.4
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.1e-46 190.7 157 58.6
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 1.1e-46 190.7 157 60.5
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 1.5e-46 190.3 157 59.9
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 1.9e-46 189.9 157 59.2
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 1.9e-46 189.9 157 59.2
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 2.5e-46 189.5 164 57.9
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 3.3e-46 189.1 176 55.7
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 5.6e-46 188.3 190 51.6
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 7.3e-46 188.0 157 58.6
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 7.3e-46 188.0 163 59.5
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 9.6e-46 187.6 164 56.7
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 1.3e-45 187.2 172 56.4
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 2.8e-45 186.0 160 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 4.8e-45 185.3 157 58.6
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 8.1e-45 184.5 205 48.3
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.1e-44 184.1 159 59.1
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 2.6e-43 179.5 158 57.0
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 4.5e-43 178.7 148 60.1
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 5.8e-43 178.3 142 62.7
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 5.8e-43 178.3 157 57.3
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 9.9e-43 177.6 203 48.3
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 8.4e-42 174.5 160 55.6
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 1.4e-41 173.7 145 59.3
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 1.9e-41 173.3 144 60.4
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 2.4e-41 172.9 133 60.9
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 4.2e-41 172.2 157 55.4
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 9.3e-41 171.0 160 58.1
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 1.2e-40 170.6 155 56.8
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 6.0e-40 168.3 165 53.9
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 6.0e-40 168.3 149 59.1
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.8e-39 166.8 146 56.8
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.1e-38 164.1 179 50.3
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 6.9e-36 154.8 173 46.8
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 1.4e-33 147.1 183 42.1
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 4.2e-33 145.6 182 44.0
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.6e-32 143.7 117 64.1
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 1.3e-31 140.6 118 59.3
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 7.4e-30 134.8 154 48.1
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 4.5e-27 125.6 132 51.5
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 5.0e-26 122.1 117 58.1
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.0e-23 112.8 92 59.8
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 8.2e-21 104.8 63 71.4
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 5.9e-19 98.6 58 70.7
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 5.9e-19 98.6 63 68.3
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 4.2e-17 92.4 71 63.4
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.0e-14 83.6 127 42.5
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 5.7e-14 82.0 162 34.0
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 1.7e-13 80.5 87 49.4
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 3.7e-13 79.3 56 60.7
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 1.4e-12 77.4 89 49.4
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 3.1e-12 76.3 82 50.0
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 4.1e-12 75.9 100 46.0
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 7.7e-11 71.6 40 65.0
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 3.8e-10 69.3 57 57.9
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 1.9e-09 67.0 67 55.2
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 6.1e-08 62.0 113 36.3
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.3e-07 60.1 42 66.7
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 3.9e-07 59.3 73 43.8
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 2.6e-06 56.6 56 48.2


User provided reference genes

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