Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb183040 Zea mays HOM05D000479 ORTHO05D026000 1.4e-75 286.2 139 100.0
Zm00001eb117110 Zea mays HOM05D000479 ORTHO05D026000 2.9e-49 198.7 114 85.1
Zm00001eb035530 Zea mays HOM05D000479 ORTHO05D026000 6.6e-46 187.6 114 83.3
Os07g0169800 Oryza sativa ssp. japonica HOM05D000479 ORTHO05D026000 4.9e-17 91.7 112 48.2
Peaxi162Scf00419g00024 Petunia axillaris HOM05D000479 ORTHO05D001285 1.9e-08 63.2 118 39.0
BcaB08g36445 Brassica carinata HOM05D000479 ORTHO05D001285 1.6e-07 60.1 106 41.5
Carub.0005s0999 Capsella rubella HOM05D000479 ORTHO05D001285 1.6e-07 60.1 106 41.5
Nitab4.5_0000020g0410 Nicotiana tabacum HOM05D000479 ORTHO05D001285 1.6e-07 60.1 101 39.6
Actinidia07934 Actinidia chinensis HOM05D000479 ORTHO05D001285 2.1e-07 59.7 117 37.6
AT3G44260 Arabidopsis thaliana HOM05D000479 ORTHO05D001285 2.1e-07 59.7 106 41.5
Carub.0006s1998 Capsella rubella HOM05D000479 ORTHO05D001285 2.1e-07 59.7 106 38.7
MD11G1172400 Malus domestica HOM05D000479 ORTHO05D001285 2.7e-07 59.3 108 41.7
SGA_v2.0_scaffold35G14023 Striga asiatica HOM05D000479 ORTHO05D001285 2.7e-07 59.3 120 36.7
BraA06t25300Z Brassica rapa HOM05D000479 ORTHO05D001285 3.5e-07 58.9 106 39.6
Gohir.A09G097600 Gossypium hirsutum HOM05D000479 ORTHO05D001285 3.5e-07 58.9 106 41.5
Gohir.D09G097301 Gossypium hirsutum HOM05D000479 ORTHO05D001285 3.5e-07 58.9 106 41.5
Gorai.006G114000 Gossypium raimondii HOM05D000479 ORTHO05D001285 3.5e-07 58.9 106 41.5
Nitab4.5_0000840g0020 Nicotiana tabacum HOM05D000479 ORTHO05D001285 3.5e-07 58.9 101 39.6
AL6G33240 Arabidopsis lyrata HOM05D000479 ORTHO05D001285 4.6e-07 58.5 106 38.7
BcaC04g19561 Brassica carinata HOM05D000479 ORTHO05D001285 4.6e-07 58.5 106 40.6
A10p18550 Brassica napus HOM05D000479 ORTHO05D001285 4.6e-07 58.5 106 40.6
C09p54400 Brassica napus HOM05D000479 ORTHO05D001285 4.6e-07 58.5 106 40.6
BolC9t58309H Brassica oleracea HOM05D000479 ORTHO05D001285 4.6e-07 58.5 106 40.6
BcaB01g04720 Brassica carinata HOM05D000479 ORTHO05D001285 6.0e-07 58.2 106 39.6
BNapus_Darmor_BZH_scaffold_38p00790 Brassica napus HOM05D000479 ORTHO05D001285 6.0e-07 58.2 106 41.5
BraA02t05646Z Brassica rapa HOM05D000479 ORTHO05D001285 6.0e-07 58.2 106 41.5
Hma1.2p1_1178F.1_g264390 Hydrangea macrophylla HOM05D000479 ORTHO05D001285 6.0e-07 58.2 106 41.5
MD02G1009600 Malus domestica HOM05D000479 ORTHO05D001656 6.0e-07 58.2 106 37.7
CSS0026739 Camellia sinensis var. sinensis HOM05D000479 ORTHO05D001656 7.9e-07 57.8 108 37.0
CARHR104630 Cardamine hirsuta HOM05D000479 ORTHO05D001285 7.9e-07 57.8 106 39.6
RcHm_v2.0_Chr5g0047241 Rosa chinensis HOM05D000479 ORTHO05D001285 7.9e-07 57.8 99 38.4
PGSC0003DMG400019618 Solanum tuberosum HOM05D000479 ORTHO05D001285 7.9e-07 57.8 106 40.6
THA.LOC104810931 Tarenaya hassleriana HOM05D000479 ORTHO05D001285 7.9e-07 57.8 106 39.6
BcaC03g13869 Brassica carinata HOM05D000479 ORTHO05D001285 1.0e-06 57.4 106 41.5
C02p10740 Brassica napus HOM05D000479 ORTHO05D001285 1.0e-06 57.4 106 41.5
BolC2t07144H Brassica oleracea HOM05D000479 ORTHO05D001285 1.0e-06 57.4 106 41.5
BraA10t43935Z Brassica rapa HOM05D000479 ORTHO05D001285 1.0e-06 57.4 106 39.6
Cc06_g06320 Coffea canephora HOM05D000479 ORTHO05D001285 1.0e-06 57.4 108 37.0
FAN11G1075 Fragaria x ananassa HOM05D000479 ORTHO05D001285 1.0e-06 57.4 118 37.3
arahy.Tifrunner.gnm1.ann1.H0MGAW Arachis hypogaea HOM05D000479 ORTHO05D014894 1.3e-06 57.0 103 41.7
Thhalv10014297m.g Eutrema salsugineum HOM05D000479 ORTHO05D001285 1.3e-06 57.0 106 39.6
Lalb_Chr24g0393431 Lupinus albus HOM05D000479 ORTHO05D001285 1.3e-06 57.0 106 38.7
QL01p011650 Quercus lobata HOM05D000479 ORTHO05D001285 1.3e-06 57.0 106 40.6
QL93p2014_0010 Quercus lobata HOM05D000479 ORTHO05D001285 1.3e-06 57.0 106 40.6
vmacro06091 Vaccinium macrocarpon HOM05D000479 ORTHO05D001656 1.3e-06 57.0 116 33.6
arahy.Tifrunner.gnm1.ann1.5E2E13 Arachis hypogaea HOM05D000479 ORTHO05D001285 1.7e-06 56.6 106 41.5
BcaC01g02025 Brassica carinata HOM05D000479 ORTHO05D001285 1.7e-06 56.6 106 38.7
A06p22090 Brassica napus HOM05D000479 ORTHO05D001285 1.7e-06 56.6 106 38.7
C03p69400 Brassica napus HOM05D000479 ORTHO05D001285 1.7e-06 56.6 106 38.7
BolC3t19200H Brassica oleracea HOM05D000479 ORTHO05D001285 1.7e-06 56.6 106 38.7
Cfa015563 Carpinus fangiana HOM05D000479 ORTHO05D001285 1.7e-06 56.6 97 38.1
SalBow3G2643 Salvia bowleyana HOM05D000479 ORTHO05D001285 1.7e-06 56.6 106 38.7
AL5G22380 Arabidopsis lyrata HOM05D000479 ORTHO05D001285 2.3e-06 56.2 106 39.6
CiPaw.13G132100 Carya illinoinensis HOM05D000479 ORTHO05D001285 2.3e-06 56.2 106 39.6
Rhsim03G0256200 Rhododendron simsii HOM05D000479 ORTHO05D001656 2.3e-06 56.2 108 36.1
Sp5g17030 Schrenkiella parvula HOM05D000479 ORTHO05D001285 2.3e-06 56.2 106 39.6
THA.LOC104799560 Tarenaya hassleriana HOM05D000479 ORTHO05D001285 2.3e-06 56.2 106 38.7
A03p10640 Brassica napus HOM05D000479 ORTHO05D001285 3.0e-06 55.8 106 37.7
Sp6g22990 Schrenkiella parvula HOM05D000479 ORTHO05D001285 3.0e-06 55.8 106 39.6
Solyc11g068770.1 Solanum lycopersicum HOM05D000479 ORTHO05D001285 3.0e-06 55.8 106 37.7
Sopen11g027490 Solanum pennellii HOM05D000479 ORTHO05D001285 3.0e-06 55.8 106 37.7
Dinv31741 Davidia involucrata HOM05D000479 ORTHO05D001285 3.9e-06 55.5 99 39.4
Gorai.001G123600 Gossypium raimondii HOM05D000479 ORTHO05D001285 3.9e-06 55.5 106 37.7
Lsat_1_v5_gn_1_57301 Lactuca sativa HOM05D000479 ORTHO05D001285 3.9e-06 55.5 104 39.4
arahy.Tifrunner.gnm1.ann1.MGX3H6 Arachis hypogaea HOM05D000479 ORTHO05D014894 5.1e-06 55.1 103 39.8
Duzib168G0468 Durio zibethinus HOM05D000479 ORTHO05D001285 5.1e-06 55.1 106 39.6
FvH4_3g25960 Fragaria vesca HOM05D000479 ORTHO05D001285 5.1e-06 55.1 99 39.4
FAN16G1374 Fragaria x ananassa HOM05D000479 ORTHO05D001285 5.1e-06 55.1 99 39.4
FAN21G2671 Fragaria x ananassa HOM05D000479 ORTHO05D001285 5.1e-06 55.1 99 39.4
FAN25G0932 Fragaria x ananassa HOM05D000479 ORTHO05D001285 5.1e-06 55.1 99 39.4
Gohir.A07G111801 Gossypium hirsutum HOM05D000479 ORTHO05D001285 5.1e-06 55.1 99 37.4
Gohir.A08G007000 Gossypium hirsutum HOM05D000479 ORTHO05D001285 5.1e-06 55.1 106 39.6
Cfa020309 Carpinus fangiana HOM05D000479 ORTHO05D001285 6.6e-06 54.7 97 36.1
Gorai.004G011500 Gossypium raimondii HOM05D000479 ORTHO05D001285 6.6e-06 54.7 106 39.6
Lj3g0016241 Lotus japonicus HOM05D000479 ORTHO05D001285 6.6e-06 54.7 99 33.3
Rhsim01G0202300 Rhododendron simsii HOM05D000479 ORTHO05D001285 6.6e-06 54.7 106 38.7
Sc21g0006910 Simmondsia chinensis HOM05D000479 ORTHO05D001285 6.6e-06 54.7 113 38.1
PGSC0003DMG400005899 Solanum tuberosum HOM05D000479 ORTHO05D001285 6.6e-06 54.7 99 39.4
PGSC0003DMG400016383 Solanum tuberosum HOM05D000479 ORTHO05D001285 6.6e-06 54.7 98 37.8
MSTRG.26613 Avicennia marina HOM05D000479 ORTHO05D001285 8.7e-06 54.3 97 35.1
Gohir.D08G017100 Gossypium hirsutum HOM05D000479 ORTHO05D001285 8.7e-06 54.3 106 38.7


User provided reference genes

Program Settings