Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 3.5e-280 967.6 483 100.0
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.2e-235 819.7 493 81.7
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.1e-179 632.9 515 62.9
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 7.8e-179 630.9 516 62.4
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 3.9e-178 628.6 513 63.0
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.2e-176 623.6 514 61.7
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 2.4e-175 619.4 513 62.6
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 4.0e-175 618.6 528 61.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 4.4e-174 615.1 514 60.5
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 5.8e-174 614.8 527 61.1
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 3.8e-173 612.1 516 60.9
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 4.9e-173 611.7 514 60.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 4.9e-173 611.7 515 60.8
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 8.4e-173 610.9 515 60.8
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.1e-172 610.5 516 60.7
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.4e-172 610.1 514 60.5
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.9e-172 609.8 514 61.5
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 4.2e-172 608.6 510 61.2
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 5.4e-172 608.2 511 61.1
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 7.1e-172 607.8 526 59.9
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.2e-171 607.1 514 60.7
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.6e-171 606.7 496 62.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.7e-171 605.9 513 60.8
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 6.0e-171 604.7 517 60.5
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 7.8e-171 604.4 528 59.8
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.0e-170 604.0 514 61.1
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.3e-170 603.6 514 60.1
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 2.3e-170 602.8 523 59.8
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 8.7e-170 600.9 527 60.2
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.5e-169 600.1 527 60.0
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.5e-169 599.4 527 58.6
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 2.5e-169 599.4 527 60.0
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 5.6e-169 598.2 514 59.7
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 1.4e-167 593.6 510 60.4
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 1.4e-167 593.6 508 60.4
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.4e-167 593.6 515 60.2
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 2.4e-167 592.8 496 60.7
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 5.2e-167 591.7 510 59.6
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.2e-166 590.5 504 59.7
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.2e-166 590.5 533 58.3
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 2.6e-166 589.3 566 54.8
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 2.6e-166 589.3 510 59.2
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.4e-166 589.0 529 58.4
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 9.9e-166 587.4 509 58.5
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.3e-165 587.0 514 58.9
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 1.3e-165 587.0 513 58.5
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 2.9e-165 585.9 515 59.2
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.9e-165 585.1 509 59.3
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.4e-165 584.7 514 58.6
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 8.4e-165 584.3 527 57.5
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.9e-164 583.2 515 58.1
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.9e-164 583.2 529 57.7
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.2e-164 582.0 523 57.7
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 4.2e-164 582.0 513 58.5
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 5.4e-164 581.6 526 57.2
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 9.3e-164 580.9 512 58.4
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.7e-163 579.3 512 58.2
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 7.8e-163 577.8 511 58.9
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 1.7e-162 576.6 514 57.4
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-162 576.2 511 58.7
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 3.9e-162 575.5 557 54.6
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.5e-161 573.5 509 58.0
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.5e-161 573.5 528 57.8
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.9e-161 573.2 503 58.4
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.5e-161 572.8 509 58.5
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 3.3e-161 572.4 523 57.2
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 4.3e-161 572.0 503 58.6
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.3e-160 570.5 530 57.0
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.6e-160 570.1 509 58.2
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.1e-160 569.7 512 58.8
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.6e-160 568.9 538 56.5
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 8.1e-160 567.8 509 57.8
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 3.1e-159 565.8 509 57.8
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.0e-159 565.5 509 58.3
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.0e-158 563.1 509 58.2
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 2.6e-158 562.8 531 56.5
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 4.5e-158 562.0 501 58.5
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.7e-157 560.1 520 56.2
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 2.9e-157 559.3 493 58.4
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 8.4e-157 557.8 510 58.2
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.4e-156 557.0 503 57.5
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 2.4e-156 556.2 457 61.3
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 4.2e-156 555.4 506 55.9
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.6e-155 553.5 511 57.5
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.7e-155 552.7 522 55.4
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.6e-155 552.0 507 56.6
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-154 550.4 511 57.3
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.8e-154 550.1 509 55.6
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.1e-152 543.1 517 54.7
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 3.7e-152 542.3 516 56.4
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 1.1e-151 540.8 528 54.2
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.4e-151 540.4 507 55.4
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 3.4e-150 535.8 516 55.8
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.8e-150 535.0 507 54.4
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.9e-149 531.9 505 55.4
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 8.4e-149 531.2 486 56.2
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 8.4e-149 531.2 502 56.0
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.1e-148 530.8 546 52.6
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 1.4e-148 530.4 520 52.9
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.1e-145 520.8 516 54.1
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 5.6e-145 518.5 501 54.7
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.1e-140 504.2 445 58.9
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.5e-137 493.0 524 51.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 5.7e-137 491.9 431 59.2
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.1e-135 487.6 422 60.2
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.4e-135 487.3 514 52.7
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 2.9e-133 479.6 438 57.5
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 8.5e-133 478.0 510 51.6
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 4.1e-127 459.1 483 51.1
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 4.2e-116 422.5 395 56.7
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 2.2e-112 410.2 518 44.6
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.2e-110 404.4 354 60.7
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.0e-110 403.7 422 53.6
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 2.6e-110 403.3 485 44.5
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.7e-109 400.6 525 44.0
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 6.6e-93 345.5 380 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 4.2e-92 342.8 471 41.6
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.2e-75 288.1 464 39.7
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.6e-51 208.0 137 70.8
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.4e-42 177.6 411 34.3
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 2.1e-35 154.5 123 61.0
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 5.5e-31 139.8 137 56.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-24 117.1 139 42.4
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.1e-23 115.5 80 67.5
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.0e-21 109.0 238 34.9
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 7.4e-20 102.8 104 53.8
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 5.3e-18 96.7 72 63.9
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 7.7e-17 92.8 77 57.1
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.5e-15 87.8 57 64.9
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 4.2e-15 87.0 61 62.3
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 7.9e-14 82.8 248 28.2
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 2.0e-09 68.2 121 43.0
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-09 67.0 53 54.7
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 3.2e-07 60.8 137 30.7


User provided reference genes

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