Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb173280 Zea mays HOM05D000173 ORTHO05D029883 1.1e-56 223.0 112 100.0
Zm00001eb261670 Zea mays HOM05D000173 ORTHO05D005118 5.3e-46 187.6 95 97.9
Os08g0128300 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D005118 4.3e-40 167.9 95 83.2
Ciclev10031954m.g Citrus clementina HOM05D000173 ORTHO05D005118 2.1e-34 149.1 97 71.1
TWI75G1344 Tripterygium wilfordii HOM05D000173 ORTHO05D005118 7.9e-34 147.1 97 68.0
Thecc.02G267300 Theobroma cacao HOM05D000173 ORTHO05D005118 1.8e-33 146.0 97 70.1
ATR0824G063 Amborella trichopoda HOM05D000173 ORTHO05D005118 3.0e-33 145.2 97 68.0
Cpa.g.sc33.85 Carica papaya HOM05D000173 ORTHO05D005118 5.1e-33 144.4 97 69.1
Duzib251G0677 Durio zibethinus HOM05D000173 ORTHO05D005118 5.1e-33 144.4 97 69.1
THA.LOC104805264 Tarenaya hassleriana HOM05D000173 ORTHO05D005118 6.7e-33 144.1 97 68.0
TWI36G0641 Tripterygium wilfordii HOM05D000173 ORTHO05D005118 8.8e-33 143.7 97 67.0
SEGI_24920 Sequoiadendron giganteum HOM05D000173 ORTHO05D005118 1.5e-32 142.9 97 68.0
HPP92_006207 Vanilla planifolia HOM05D000173 ORTHO05D005118 1.5e-32 142.9 97 68.0
VMungo0251G3170 Vigna mungo HOM05D000173 ORTHO05D005118 1.5e-32 142.9 97 66.0
CDE02G2581 Ceratophyllum demersum HOM05D000173 ORTHO05D005118 2.0e-32 142.5 95 68.4
Duzib248G1142 Durio zibethinus HOM05D000173 ORTHO05D005118 2.6e-32 142.1 97 68.0
Duzib268G0638 Durio zibethinus HOM05D000173 ORTHO05D005118 2.6e-32 142.1 97 67.0
Lj4g0001543 Lotus japonicus HOM05D000173 ORTHO05D005118 2.6e-32 142.1 95 68.4
VMungo0251G2751 Vigna mungo HOM05D000173 ORTHO05D005118 2.6e-32 142.1 95 68.4
Cfa009262 Carpinus fangiana HOM05D000173 ORTHO05D005118 3.3e-32 141.7 95 69.5
COL.COLO4_23534 Corchorus olitorius HOM05D000173 ORTHO05D005118 3.3e-32 141.7 97 67.0
Haze_12295 Corylus avellana HOM05D000173 ORTHO05D005118 3.3e-32 141.7 95 69.5
arahy.Tifrunner.gnm1.ann1.L0HS84 Arachis hypogaea HOM05D000173 ORTHO05D005118 4.4e-32 141.4 95 68.4
Phvul.002G252900 Phaseolus vulgaris HOM05D000173 ORTHO05D005118 4.4e-32 141.4 93 69.9
Sabra10G0018600 Salix brachista HOM05D000173 ORTHO05D005118 5.7e-32 141.0 98 68.4
Glyma.05G172600 Glycine max HOM05D000173 ORTHO05D005118 7.4e-32 140.6 95 67.4
Gohir.D02G155901 Gossypium hirsutum HOM05D000173 ORTHO05D005118 7.4e-32 140.6 97 68.0
Gorai.005G174800 Gossypium raimondii HOM05D000173 ORTHO05D005118 7.4e-32 140.6 97 68.0
RcHm_v2.0_Chr4g0432381 Rosa chinensis HOM05D000173 ORTHO05D005118 7.4e-32 140.6 97 67.0
Gorai.008G162200 Gossypium raimondii HOM05D000173 ORTHO05D005118 9.7e-32 140.2 97 66.0
Manes.13G019900 Manihot esculenta HOM05D000173 ORTHO05D005118 9.7e-32 140.2 97 66.0
Phvul.002G253600 Phaseolus vulgaris HOM05D000173 ORTHO05D005118 9.7e-32 140.2 95 68.4
Potri.010G051500 Populus trichocarpa HOM05D000173 ORTHO05D005118 1.3e-31 139.8 98 67.3
THA.LOC104825679 Tarenaya hassleriana HOM05D000173 ORTHO05D005118 1.3e-31 139.8 97 64.9
CDE09G0462 Ceratophyllum demersum HOM05D000173 ORTHO05D005118 1.7e-31 139.4 95 66.3
Psat7g059120 Pisum sativum HOM05D000173 ORTHO05D005118 1.7e-31 139.4 95 67.4
Sed0014230 Sechium edule HOM05D000173 ORTHO05D005118 1.7e-31 139.4 95 68.4
Gohir.D12G150700 Gossypium hirsutum HOM05D000173 ORTHO05D005118 2.2e-31 139.0 97 66.0
QL03p056088 Quercus lobata HOM05D000173 ORTHO05D005118 2.2e-31 139.0 95 67.4
PGSC0003DMG400010772 Solanum tuberosum HOM05D000173 ORTHO05D005118 2.2e-31 139.0 96 68.8
Gohir.A12G146100 Gossypium hirsutum HOM05D000173 ORTHO05D005118 2.8e-31 138.7 97 66.0
Lalb_Chr13g0295811 Lupinus albus HOM05D000173 ORTHO05D005118 2.8e-31 138.7 95 66.3
Lj6C816T4 Lonicera japonica HOM05D000173 ORTHO05D005118 3.7e-31 138.3 96 68.8
BcaNung02569 Brassica carinata HOM05D000173 ORTHO05D005118 4.8e-31 137.9 97 66.0
C08p15910 Brassica napus HOM05D000173 ORTHO05D005118 4.8e-31 137.9 97 66.0
BolC8t49215H Brassica oleracea HOM05D000173 ORTHO05D005118 4.8e-31 137.9 97 66.0
CAN.G43.32 Capsicum annuum HOM05D000173 ORTHO05D005118 4.8e-31 137.9 96 68.8
ClCG05G026140 Citrullus lanatus HOM05D000173 ORTHO05D005118 4.8e-31 137.9 95 67.4
Medtr8g089630 Medicago truncatula HOM05D000173 ORTHO05D005118 4.8e-31 137.9 95 66.3
TPR.G6282 Trifolium pratense HOM05D000173 ORTHO05D005118 4.8e-31 137.9 95 66.3
Aa31LG1G1620 Aethionema arabicum HOM05D000173 ORTHO05D005118 6.3e-31 137.5 98 67.3
CANSAT01G1411 Cannabis sativa HOM05D000173 ORTHO05D005118 6.3e-31 137.5 95 66.3
MELO3C011913.2 Cucumis melo HOM05D000173 ORTHO05D005118 6.3e-31 137.5 95 67.4
CsaV3_5G030720 Cucumis sativus L. HOM05D000173 ORTHO05D005118 6.3e-31 137.5 95 67.4
Actinidia15122 Actinidia chinensis HOM05D000173 ORTHO05D005118 8.2e-31 137.1 96 67.7
Actinidia37457 Actinidia chinensis HOM05D000173 ORTHO05D005118 8.2e-31 137.1 96 67.7
BcaB03g13153 Brassica carinata HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
A06p08560 Brassica napus HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
C05p10180 Brassica napus HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
BolC5t29762H Brassica oleracea HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
BraA06t24052Z Brassica rapa HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
CSS0010881 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005118 8.2e-31 137.1 96 68.8
CSS0024162 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005118 8.2e-31 137.1 96 68.8
Thhalv10007702m.g Eutrema salsugineum HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
Glyma.05G172200 Glycine max HOM05D000173 ORTHO05D005118 8.2e-31 137.1 95 67.4
Gohir.A03G131900 Gossypium hirsutum HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 67.0
MD16G1106100 Malus domestica HOM05D000173 ORTHO05D005118 8.2e-31 137.1 97 64.9
CAN.G37.8 Capsicum annuum HOM05D000173 ORTHO05D005118 1.1e-30 136.7 96 66.7
Sed0008942 Sechium edule HOM05D000173 ORTHO05D005118 1.1e-30 136.7 95 67.4
Sc04g0009740 Simmondsia chinensis HOM05D000173 ORTHO05D005118 1.1e-30 136.7 95 63.2
TAR374G1269 Trochodendron aralioides HOM05D000173 ORTHO05D005118 1.1e-30 136.7 98 69.4
BraA08t35166Z Brassica rapa HOM05D000173 ORTHO05D005118 1.4e-30 136.3 97 64.9
FvH4_4g25180 Fragaria vesca HOM05D000173 ORTHO05D005118 1.4e-30 136.3 98 64.3
FAN12G3393 Fragaria x ananassa HOM05D000173 ORTHO05D005118 1.4e-30 136.3 98 64.3
Solyc05g013940.4 Solanum lycopersicum HOM05D000173 ORTHO05D005118 1.4e-30 136.3 96 65.6
Lalb_Chr07g0185541 Lupinus albus HOM05D000173 ORTHO05D005118 1.8e-30 136.0 95 66.3
MD13G1105900 Malus domestica HOM05D000173 ORTHO05D005118 1.8e-30 136.0 97 64.9
Nitab4.5_0000067g0260 Nicotiana tabacum HOM05D000173 ORTHO05D005118 1.8e-30 136.0 95 66.3
Prupe.1G240300 Prunus persica HOM05D000173 ORTHO05D005118 1.8e-30 136.0 97 64.9
Sp1g11700 Schrenkiella parvula HOM05D000173 ORTHO05D005118 1.8e-30 136.0 97 64.9
Solyc04g024530.3 Solanum lycopersicum HOM05D000173 ORTHO05D005118 1.8e-30 136.0 96 66.7
Sopen04g010430 Solanum pennellii HOM05D000173 ORTHO05D005118 1.8e-30 136.0 96 66.7
Sopen05g008870 Solanum pennellii HOM05D000173 ORTHO05D005118 1.8e-30 136.0 96 65.6
Hund25412 Selenicereus undatus HOM05D000173 ORTHO05D005118 2.4e-30 135.6 95 64.2
AT1G13180 Arabidopsis thaliana HOM05D000173 ORTHO05D005118 3.1e-30 135.2 97 64.9
Carub.0001s1291 Capsella rubella HOM05D000173 ORTHO05D005118 3.1e-30 135.2 97 63.9
FAN07G0203 Fragaria x ananassa HOM05D000173 ORTHO05D005118 3.1e-30 135.2 98 64.3
Hma1.2p1_0079F.1_g041280 Hydrangea macrophylla HOM05D000173 ORTHO05D005118 3.1e-30 135.2 96 67.7
Lalb_Chr12g0204111 Lupinus albus HOM05D000173 ORTHO05D005118 3.1e-30 135.2 95 65.3
AL1G24860 Arabidopsis lyrata HOM05D000173 ORTHO05D005118 4.1e-30 134.8 97 63.9
A08p32420 Brassica napus HOM05D000173 ORTHO05D005118 4.1e-30 134.8 97 63.9
AUR62024212 Chenopodium quinoa HOM05D000173 ORTHO05D005118 4.1e-30 134.8 99 64.6
Potri.008G182700 Populus trichocarpa HOM05D000173 ORTHO05D005118 4.1e-30 134.8 98 66.3
Dinv14756 Davidia involucrata HOM05D000173 ORTHO05D005118 5.3e-30 134.4 96 67.7
FAN22G2126 Fragaria x ananassa HOM05D000173 ORTHO05D005118 5.3e-30 134.4 98 63.3
Manes.12G019300 Manihot esculenta HOM05D000173 ORTHO05D005118 5.3e-30 134.4 97 63.9
Peaxi162Scf00128g00629 Petunia axillaris HOM05D000173 ORTHO05D005118 5.3e-30 134.4 96 65.6
Aqoxy5G03633 Aquilegia oxysepala HOM05D000173 ORTHO05D005118 6.9e-30 134.0 97 64.9
PSO063G0928 Papaver somniferum HOM05D000173 ORTHO05D005118 6.9e-30 134.0 99 65.7
PSO067G0005 Papaver somniferum HOM05D000173 ORTHO05D005118 6.9e-30 134.0 99 65.7
TAR622G1319 Trochodendron aralioides HOM05D000173 ORTHO05D005118 6.9e-30 134.0 98 67.3
Gorai.002G189400 Gossypium raimondii HOM05D000173 ORTHO05D005118 9.1e-30 133.7 97 64.9
vmacro16158 Vaccinium macrocarpon HOM05D000173 ORTHO05D005118 9.1e-30 133.7 96 66.7
Ah.02g130380 Amaranthus hybridus HOM05D002979 ORTHO05D005118 1.2e-29 133.3 99 64.6
arahy.Tifrunner.gnm1.ann1.NV77KT Arachis hypogaea HOM05D000173 ORTHO05D005118 1.2e-29 133.3 108 61.1
BcaC05g25078 Brassica carinata HOM05D000173 ORTHO05D005118 1.2e-29 133.3 97 63.9
SGA_v2.0_scaffold87G27106 Striga asiatica HOM05D000173 ORTHO05D005118 1.2e-29 133.3 97 66.0
Oeu059780.1 Olea europaea HOM05D000173 ORTHO05D005118 1.5e-29 132.9 97 63.9
AUR62005525 Chenopodium quinoa HOM05D000173 ORTHO05D005118 2.0e-29 132.5 99 63.6
Sabra08G0139200 Salix brachista HOM05D000173 ORTHO05D005118 2.0e-29 132.5 97 63.9
Nitab4.5_0007967g0010 Nicotiana tabacum HOM05D000173 ORTHO05D005118 3.4e-29 131.7 95 64.2
Gohir.A01G157600 Gossypium hirsutum HOM05D000173 ORTHO05D005118 5.9e-29 131.0 97 62.9
Gohir.D10G111800 Gossypium hirsutum HOM05D000173 ORTHO05D029883 5.9e-29 131.0 97 61.9
Gorai.011G123400 Gossypium raimondii HOM05D000173 ORTHO05D029883 5.9e-29 131.0 97 61.9
MSTRG.7957 Avicennia marina HOM05D000173 ORTHO05D005118 7.7e-29 130.6 97 61.9
EL10As2g23190 Beta vulgaris HOM05D000173 ORTHO05D005118 7.7e-29 130.6 99 63.6
Nitab4.5_0000041g0090 Nicotiana tabacum HOM05D000173 ORTHO05D005118 7.7e-29 130.6 97 66.0
DCAR_031171 Daucus carota HOM05D000173 ORTHO05D005118 1.0e-28 130.2 98 62.2
Nitab4.5_0005933g0020 Nicotiana tabacum HOM05D000173 ORTHO05D005118 1.3e-28 129.8 97 64.9
DCAR_007034 Daucus carota HOM05D000173 ORTHO05D005118 1.7e-28 129.4 96 64.6
Migut.K00636 Erythranthe guttata HOM05D000173 ORTHO05D005118 1.7e-28 129.4 96 62.5
Dinv11030 Davidia involucrata HOM05D002413 ORTHO05D005118 2.2e-28 129.0 96 62.5
Eucgr.H02449 Eucalyptus grandis HOM05D000173 ORTHO05D005118 2.2e-28 129.0 96 63.5
Lsat_1_v5_gn_4_2801 Lactuca sativa HOM05D000173 ORTHO05D005118 2.9e-28 128.6 98 61.2
Lsat_1_v5_gn_8_155161 Lactuca sativa HOM05D000173 ORTHO05D005118 2.9e-28 128.6 98 59.2
Os02g0596900 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D005118 2.9e-28 128.6 98 61.2
CSS0032240 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005118 3.8e-28 128.3 96 61.5
MSTRG.547 Avicennia marina HOM05D000173 ORTHO05D005118 6.5e-28 127.5 95 61.1
Cc11_g16170 Coffea canephora HOM05D000173 ORTHO05D005118 6.5e-28 127.5 97 62.9
Oeu013545.1 Olea europaea HOM05D000173 ORTHO05D005118 8.5e-28 127.1 95 64.2
HanXRQChr17g0569641 Helianthus annuus HOM05D000173 ORTHO05D005118 2.5e-27 125.6 98 61.2
SMO197G0069 Selaginella moellendorffii HOM05D000173 ORTHO05D005118 2.5e-27 125.6 102 62.7
Migut.E00222 Erythranthe guttata HOM05D000173 ORTHO05D005118 3.2e-27 125.2 97 59.8
SalBow8G2147 Salvia bowleyana HOM05D000173 ORTHO05D005118 7.2e-27 124.0 97 61.9
Zm00001eb246220 Zea mays HOM05D000173 ORTHO05D005118 7.2e-27 124.0 102 57.8
SalBow2G3587 Salvia bowleyana HOM05D000173 ORTHO05D005118 2.1e-26 122.5 95 56.8
SHI17846 Sapria himalayana HOM05D000173 ORTHO05D005118 2.1e-26 122.5 97 54.6
AagrBONN_evm.TU.Sc2ySwM_344.529 Anthoceros agrestis HOM05D000173 ORTHO05D005118 2.7e-26 122.1 92 65.2
Mapoly0121s0042 Marchantia polymorpha HOM05D000173 ORTHO05D005118 2.7e-26 122.1 100 62.0
Zm00001eb183860 Zea mays HOM05D000173 ORTHO05D005118 6.1e-26 120.9 102 56.9
Pp3c21_17450 Physcomitrium patens HOM05D000173 ORTHO05D005118 8.0e-26 120.6 97 62.9
FAN17G0066 Fragaria x ananassa HOM05D000173 ORTHO05D005118 5.2e-25 117.9 97 57.7
Psat7g059080 Pisum sativum HOM05D000173 ORTHO05D005118 8.8e-25 117.1 81 66.7
unitig_8.g3933 Utricularia gibba HOM05D000173 ORTHO05D005118 8.8e-25 117.1 97 58.8
Atru.chr11.2189 Acer truncatum HOM05D000173 ORTHO05D005118 1.3e-23 113.2 78 66.7
Nn4g22515 Nelumbo nucifera HOM05D000173 ORTHO05D005118 1.4e-22 109.8 81 61.7
CiPaw.05G176600 Carya illinoinensis HOM05D000173 ORTHO05D005118 9.1e-22 107.1 78 66.7
Lj3A1063T57 Lonicera japonica HOM05D000173 ORTHO05D005118 2.6e-21 105.5 84 61.9
ECA234G0363 Erigeron canadensis HOM05D000173 ORTHO05D005118 3.8e-20 101.7 81 60.5
Gohir.D01G152900 Gossypium hirsutum HOM05D000173 ORTHO05D005118 1.1e-19 100.1 78 61.5
GSVIVG01000587001 Vitis vinifera HOM05D000173 ORTHO05D005118 7.2e-19 97.4 90 55.6
Psat1g100080 Pisum sativum HOM05D000059 ORTHO05D004122 1.4e-17 93.2 77 57.1
Gohir.A10G154250 Gossypium hirsutum HOM05D000173 ORTHO05D029883 6.7e-17 90.9 99 51.5
Haze_26401 Corylus avellana HOM05D000173 ORTHO05D005118 3.2e-11 72.0 91 45.1
Zm00001eb336200 Zea mays HOM05D000173 ORTHO05D005118 4.2e-11 71.6 83 48.2
Gohir.A11G222402 Gossypium hirsutum HOM05D000173 ORTHO05D005118 8.0e-10 67.4 97 38.1
Cfa025532 Carpinus fangiana HOM05D000173 ORTHO05D005118 2.3e-09 65.9 113 41.6
Cre16.g676050 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D005118 6.8e-09 64.3 93 39.8
GSVIVG01036362001 Vitis vinifera HOM05D000173 ORTHO05D005118 5.7e-08 61.2 52 53.8


User provided reference genes

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