Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 6.0e-94 347.4 168 100.0
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 8.5e-40 167.5 107 76.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.9e-31 139.8 108 67.6
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.2e-25 120.6 108 59.3
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 5.0e-24 115.2 108 57.4
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 8.5e-24 114.4 108 59.3
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.1e-23 114.0 108 54.6
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.1e-23 114.0 108 58.3
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.5e-23 113.6 117 53.8
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.9e-23 113.2 107 56.1
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 1.9e-23 113.2 109 59.6
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.5e-23 112.8 108 56.5
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 7.2e-23 111.3 108 57.4
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 7.2e-23 111.3 108 57.4
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 9.4e-23 110.9 115 53.9
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 9.4e-23 110.9 115 53.9
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 9.4e-23 110.9 109 56.0
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 9.4e-23 110.9 108 57.4
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.2e-22 110.5 108 57.4
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.2e-22 110.5 123 50.4
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.6e-22 110.2 108 56.5
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.1e-22 109.8 117 51.3
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.1e-22 109.8 117 49.6
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.1e-22 109.8 108 57.4
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.7e-22 109.4 118 54.2
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.6e-22 109.0 108 56.5
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 4.7e-22 108.6 108 53.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 4.7e-22 108.6 108 54.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 8.0e-22 107.8 106 53.8
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.0e-21 107.5 125 50.4
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.0e-21 107.5 108 54.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.0e-21 107.5 108 53.7
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.0e-21 107.5 109 56.9
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.4e-21 107.1 107 54.2
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.8e-21 106.7 108 54.6
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.8e-21 106.7 108 53.7
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.0e-21 105.9 108 55.6
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 3.0e-21 105.9 113 54.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 4.0e-21 105.5 107 55.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 4.0e-21 105.5 107 52.3
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 4.0e-21 105.5 107 52.3
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-21 105.1 108 55.6
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.2e-21 105.1 108 51.9
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 6.8e-21 104.8 108 54.6
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 6.8e-21 104.8 108 53.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 8.8e-21 104.4 108 52.8
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.5e-20 103.6 107 53.3
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.5e-20 103.6 107 53.3
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 2.0e-20 103.2 108 52.8
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.6e-20 102.8 108 53.7
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.6e-20 102.8 108 54.6
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.6e-20 102.8 108 53.7
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 3.4e-20 102.4 104 51.9
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.4e-20 102.4 107 55.1
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.4e-20 102.4 107 55.1
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 3.4e-20 102.4 107 55.1
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.4e-20 102.4 108 54.6
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 5.7e-20 101.7 121 50.4
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 5.7e-20 101.7 107 55.1
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 5.7e-20 101.7 107 49.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 5.7e-20 101.7 108 48.1
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 5.7e-20 101.7 108 51.9
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 7.5e-20 101.3 113 49.6
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 7.5e-20 101.3 113 49.6
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 7.5e-20 101.3 127 46.5
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 7.5e-20 101.3 108 51.9
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 7.5e-20 101.3 107 49.5
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 7.5e-20 101.3 111 51.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 9.8e-20 100.9 114 50.9
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 9.8e-20 100.9 114 50.9
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 9.8e-20 100.9 108 51.9
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.3e-19 100.5 107 51.4
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.3e-19 100.5 121 49.6
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.7e-19 100.1 114 50.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.7e-19 100.1 128 46.9
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.7e-19 100.1 128 46.9
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.7e-19 100.1 128 46.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.2e-19 99.8 121 49.6
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 2.8e-19 99.4 114 50.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 2.8e-19 99.4 114 50.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 2.8e-19 99.4 114 50.0
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 3.7e-19 99.0 118 49.2
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 4.9e-19 98.6 108 51.9
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 6.3e-19 98.2 121 48.8
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 6.3e-19 98.2 128 46.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 8.3e-19 97.8 111 47.7
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 2.0e-17 93.2 107 45.8
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 2.0e-17 93.2 123 47.2
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 2.7e-17 92.8 126 45.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 3.5e-17 92.4 109 48.6
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 4.5e-17 92.0 120 44.2
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.8e-16 89.0 143 40.6
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 5.0e-16 88.6 108 50.0
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 6.6e-16 88.2 107 47.7
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.1e-15 87.4 108 50.0
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.5e-15 87.0 108 49.1
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.9e-15 86.7 76 60.5
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 9.5e-15 84.3 109 46.8
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.1e-14 83.2 108 48.1
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 6.1e-14 81.6 150 38.0
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.0e-13 80.9 121 35.5
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.2e-12 77.4 122 40.2
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 2.6e-12 76.3 127 44.1
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-12 75.5 122 38.5
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 7.5e-12 74.7 122 38.5
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.7e-09 66.2 55 61.8
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 2.7e-09 66.2 108 35.2
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 7.8e-09 64.7 108 33.3
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-09 64.7 121 35.5
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-08 63.9 119 33.6
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-08 63.5 114 37.7
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.7e-08 63.5 102 39.2
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 8.6e-08 61.2 124 31.5
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-07 59.7 132 30.3
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.6e-07 58.5 93 35.5
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 7.3e-07 58.2 73 37.0
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 2.1e-06 56.6 74 40.5
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-06 55.5 107 36.4
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 8.0e-06 54.7 65 38.5


User provided reference genes

Program Settings