Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 2.1e-190 669.8 658 100.0
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 3.5e-121 439.9 645 80.6
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 8.8e-32 142.9 639 49.3
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 7.0e-29 133.3 160 43.1
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 5.9e-28 130.2 180 40.6
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 9.4e-26 122.9 169 50.9
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 7.5e-23 113.2 173 54.9
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 1.4e-21 109.0 176 47.7
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 9.1e-21 106.3 173 32.9
Os02g0315200 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 6.5e-19 100.1 188 42.0
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 3.2e-18 97.8 69 63.8
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 4.2e-18 97.4 174 34.5
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 4.2e-18 97.4 70 62.9
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 9.4e-18 96.3 69 60.9
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 9.4e-18 96.3 69 60.9
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 9.4e-18 96.3 120 42.5
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 2.7e-17 94.7 171 32.2
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 4.7e-17 94.0 68 63.2
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 4.7e-17 94.0 176 47.7
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 4.7e-17 94.0 69 60.9
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 6.1e-17 93.6 69 60.9
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 6.1e-17 93.6 176 48.9
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 6.1e-17 93.6 70 61.4
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 1.0e-16 92.8 118 43.2
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 1.4e-16 92.4 71 54.9
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 1.8e-16 92.0 71 54.9
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 1.8e-16 92.0 71 54.9
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 1.8e-16 92.0 69 60.9
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 2.3e-16 91.7 69 59.4
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 2.3e-16 91.7 69 59.4
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 3.0e-16 91.3 69 60.9
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 4.0e-16 90.9 71 56.3
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 5.2e-16 90.5 69 56.5
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 8.8e-16 89.7 69 59.4
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 8.8e-16 89.7 173 32.9
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 8.8e-16 89.7 173 32.9
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 1.2e-15 89.4 172 51.2
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 1.2e-15 89.4 69 58.0
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 1.2e-15 89.4 69 58.0
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 1.2e-15 89.4 173 32.9
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 1.2e-15 89.4 67 56.7
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 1.5e-15 89.0 71 54.9
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 1.5e-15 89.0 70 55.7
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 1.5e-15 89.0 68 57.4
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 1.5e-15 89.0 69 56.5
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 2.0e-15 88.6 172 48.3
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 2.0e-15 88.6 69 56.5
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 2.0e-15 88.6 69 58.0
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 2.6e-15 88.2 69 58.0
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.6e-15 88.2 69 58.0
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 2.6e-15 88.2 69 56.5
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 2.6e-15 88.2 69 55.1
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 2.6e-15 88.2 69 56.5
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 3.4e-15 87.8 69 59.4
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 3.4e-15 87.8 69 59.4
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 4.4e-15 87.4 68 58.8
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 4.4e-15 87.4 67 59.7
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 4.4e-15 87.4 67 59.7
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 4.4e-15 87.4 67 59.7
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 4.4e-15 87.4 67 59.7
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 4.4e-15 87.4 67 58.2
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 7.5e-15 86.7 69 56.5
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 7.5e-15 86.7 69 56.5
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 7.5e-15 86.7 69 56.5
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 9.8e-15 86.3 69 53.6
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 9.8e-15 86.3 68 54.4
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 9.8e-15 86.3 66 56.1
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 1.3e-14 85.9 63 60.3
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 1.7e-14 85.5 69 58.0
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 1.7e-14 85.5 69 55.1
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 2.2e-14 85.1 66 59.1
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 2.2e-14 85.1 71 52.1
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 6.3e-14 83.6 69 53.6
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 1.1e-13 82.8 68 52.9
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 1.4e-13 82.4 64 57.8
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 1.8e-13 82.0 64 56.2
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 1.8e-13 82.0 64 56.2
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 1.8e-13 82.0 64 56.2
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 2.4e-13 81.6 63 60.3
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 2.4e-13 81.6 68 52.9
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 4.1e-13 80.9 61 59.0
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 5.4e-13 80.5 64 56.2
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 5.4e-13 80.5 63 55.6
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 7.0e-13 80.1 63 55.6
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 1.2e-12 79.3 61 57.4
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.6e-12 79.0 63 54.0
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 2.0e-12 78.6 62 54.8
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 2.7e-12 78.2 61 55.7
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 4.5e-12 77.4 62 54.8
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 7.7e-12 76.6 62 56.5
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.2e-09 69.3 163 33.1
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 4.0e-08 64.3 70 44.3
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 5.2e-08 63.9 165 29.7
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 6.8e-08 63.5 51 54.9
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 6.8e-08 63.5 70 42.9
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 1.2e-07 62.8 159 33.3
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 4.4e-07 60.8 172 30.2
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 9.8e-07 59.7 161 32.3
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 1.3e-06 59.3 163 29.4
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 1.3e-06 59.3 163 29.4
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 1.3e-06 59.3 57 47.4
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 1.7e-06 58.9 112 32.1


User provided reference genes

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