Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb143310 Zea mays HOM05D000423 ORTHO05D000284 1.3e-96 356.7 228 100.0
Os01g0919800 Oryza sativa ssp. japonica HOM05D000423 ORTHO05D000284 6.6e-27 125.2 127 63.0
Gohir.A05G390800 Gossypium hirsutum HOM05D000423 ORTHO05D000284 5.8e-15 85.5 126 44.4
Gohir.D04G026400 Gossypium hirsutum HOM05D000423 ORTHO05D000284 5.8e-15 85.5 126 44.4
Gorai.012G029000 Gossypium raimondii HOM05D000423 ORTHO05D000284 5.8e-15 85.5 126 44.4
Cc09_g03470 Coffea canephora HOM05D000423 ORTHO05D000284 1.3e-14 84.3 126 44.4
MBI07_g22284_MAGBIO Magnolia biondii HOM05D000423 ORTHO05D000284 1.7e-14 84.0 124 45.2
Nitab4.5_0000946g0090 Nicotiana tabacum HOM05D000423 ORTHO05D000284 2.9e-14 83.2 124 41.9
Thecc.05G201200 Theobroma cacao HOM05D000423 ORTHO05D000284 1.4e-13 80.9 126 42.1
Eucgr.B01405 Eucalyptus grandis HOM05D000423 ORTHO05D000284 3.2e-13 79.7 127 40.2
QL01p049050 Quercus lobata HOM05D000423 ORTHO05D000284 4.1e-13 79.3 124 40.3
MD12G1259500 Malus domestica HOM05D000423 ORTHO05D000284 5.4e-13 79.0 124 41.9
Os11g0122800 Oryza sativa ssp. japonica HOM05D000423 ORTHO05D000284 5.4e-13 79.0 145 40.7
PGR119G1797 Punica granatum HOM05D000423 ORTHO05D000284 9.2e-13 78.2 135 39.3
Dinv29115 Davidia involucrata HOM05D000423 ORTHO05D000284 1.2e-12 77.8 124 42.7
Duzib128G0255 Durio zibethinus HOM05D000423 ORTHO05D000284 1.2e-12 77.8 126 41.3
DCAR_028391 Daucus carota HOM05D000423 ORTHO05D000284 2.1e-12 77.0 124 45.2
ATR0561G130 Amborella trichopoda HOM05D000423 ORTHO05D000284 3.5e-12 76.3 130 43.1
Cfa006271 Carpinus fangiana HOM05D000421 ORTHO05D001007 3.5e-12 76.3 126 39.7
Haze_04541 Corylus avellana HOM05D000423 ORTHO05D000284 3.5e-12 76.3 126 41.3
Lj1A583G10 Lonicera japonica HOM05D000423 ORTHO05D000284 1.3e-11 74.3 126 40.5
MD04G1243800 Malus domestica HOM05D000423 ORTHO05D000284 1.3e-11 74.3 124 40.3
Duzib177G0038 Durio zibethinus HOM05D000423 ORTHO05D000284 1.7e-11 73.9 126 38.9
Nitab4.5_0000083g0010 Nicotiana tabacum HOM05D000423 ORTHO05D000284 1.7e-11 73.9 126 39.7
MD04G1205100 Malus domestica HOM05D000423 ORTHO05D000284 2.3e-11 73.6 124 39.5
Manes.08G104400 Manihot esculenta HOM05D000423 ORTHO05D000284 2.3e-11 73.6 126 38.1
GSVIVG01019126001 Vitis vinifera HOM05D000423 ORTHO05D000284 2.3e-11 73.6 127 40.2
Actinidia06810 Actinidia chinensis HOM05D000423 ORTHO05D000284 3.0e-11 73.2 126 38.1
COL.COLO4_27395 Corchorus olitorius HOM05D000423 ORTHO05D000284 3.0e-11 73.2 123 39.8
Aqoxy2G04058 Aquilegia oxysepala HOM05D000423 ORTHO05D000284 3.9e-11 72.8 126 41.3
Potri.019G052800 Populus trichocarpa HOM05D000423 ORTHO05D000284 5.1e-11 72.4 126 36.5
Prupe.6G360300 Prunus persica HOM05D000423 ORTHO05D000284 5.1e-11 72.4 125 41.6
Sabra13G0077000 Salix brachista HOM05D000423 ORTHO05D000284 5.1e-11 72.4 126 36.5
Nn1g09750 Nelumbo nucifera HOM05D000423 ORTHO05D000284 6.6e-11 72.0 124 43.5
Potri.013G087000 Populus trichocarpa HOM05D000423 ORTHO05D000284 8.6e-11 71.6 126 35.7
Sabra19G0062400 Salix brachista HOM05D000423 ORTHO05D000284 8.6e-11 71.6 124 37.1
Atru.chr12.1802 Acer truncatum HOM05D000423 ORTHO05D000284 1.1e-10 71.2 124 39.5
Carub.0006s1473 Capsella rubella HOM05D000423 ORTHO05D000284 1.1e-10 71.2 127 41.7
Hma1.2p1_0171F.1_g075800 Hydrangea macrophylla HOM05D000423 ORTHO05D000284 1.1e-10 71.2 126 39.7
CiPaw.07G079100 Carya illinoinensis HOM05D000423 ORTHO05D000284 1.5e-10 70.9 129 37.2
PSO675G8688 Papaver somniferum HOM05D000423 ORTHO05D000284 1.5e-10 70.9 124 41.1
TWI18G0557 Tripterygium wilfordii HOM05D000423 ORTHO05D000284 1.9e-10 70.5 124 36.3
vmacro19611 Vaccinium macrocarpon HOM05D000423 ORTHO05D000284 1.9e-10 70.5 126 36.5
Eucgr.H01382 Eucalyptus grandis HOM05D000423 ORTHO05D000284 2.5e-10 70.1 124 38.7
Lj1g0025889 Lotus japonicus HOM05D000423 ORTHO05D000284 2.5e-10 70.1 136 38.2
TAR633G0120 Trochodendron aralioides HOM05D000423 ORTHO05D000284 2.5e-10 70.1 126 38.9
CANSAT54G0368 Cannabis sativa HOM05D000423 ORTHO05D000284 3.3e-10 69.7 132 37.9
Sed0010241 Sechium edule HOM05D000423 ORTHO05D000284 3.3e-10 69.7 129 40.3
AL6G27480 Arabidopsis lyrata HOM05D000423 ORTHO05D000284 4.3e-10 69.3 124 41.1
RcHm_v2.0_Chr3g0448071 Rosa chinensis HOM05D000423 ORTHO05D000284 4.3e-10 69.3 124 41.9
Sc09g0001530 Simmondsia chinensis HOM05D000423 ORTHO05D000284 4.3e-10 69.3 124 40.3
AUR62000323 Chenopodium quinoa HOM05D000423 ORTHO05D000284 5.6e-10 68.9 126 41.3
THA.LOC104802948 Tarenaya hassleriana HOM05D000423 ORTHO05D000284 5.6e-10 68.9 124 41.1
TAR362G0258 Trochodendron aralioides HOM05D000423 ORTHO05D000284 5.6e-10 68.9 126 39.7
EL10Ac4g09980 Beta vulgaris HOM05D000423 ORTHO05D000284 7.3e-10 68.6 130 38.5
CSS0020728 Camellia sinensis var. sinensis HOM05D000423 ORTHO05D000284 7.3e-10 68.6 126 38.1
AT5G16530 Arabidopsis thaliana HOM05D000423 ORTHO05D000284 1.6e-09 67.4 124 40.3
C03p09060 Brassica napus HOM05D000423 ORTHO05D000284 2.1e-09 67.0 126 40.5
BolC3t13401H Brassica oleracea HOM05D000423 ORTHO05D000284 2.1e-09 67.0 126 40.5
Thhalv10013986m.g Eutrema salsugineum HOM05D000423 ORTHO05D000284 2.1e-09 67.0 126 37.3
DCAR_029416 Daucus carota HOM05D000423 ORTHO05D000284 2.8e-09 66.6 126 35.7
Rhsim05G0168600 Rhododendron simsii HOM05D000423 ORTHO05D000284 2.8e-09 66.6 124 39.5
RhsimUnG0090500 Rhododendron simsii HOM05D000423 ORTHO05D000284 2.8e-09 66.6 124 39.5
Manes.09G184701 Manihot esculenta HOM05D000423 ORTHO05D000284 3.6e-09 66.2 126 35.7
ClCG11G010850 Citrullus lanatus HOM05D000423 ORTHO05D000284 4.7e-09 65.9 132 39.4
CsaV3_2G009610 Cucumis sativus L. HOM05D000423 ORTHO05D000284 4.7e-09 65.9 126 39.7
FvH4_6g00660 Fragaria vesca HOM05D000423 ORTHO05D000284 4.7e-09 65.9 127 40.2
FAN02G1471 Fragaria x ananassa HOM05D000423 ORTHO05D000284 4.7e-09 65.9 127 40.2
FAN09G1229 Fragaria x ananassa HOM05D000423 ORTHO05D000284 4.7e-09 65.9 127 40.2
FAN14G5277 Fragaria x ananassa HOM05D000423 ORTHO05D000284 4.7e-09 65.9 127 40.2
HanXRQChr05g0132571 Helianthus annuus HOM05D000423 ORTHO05D000284 4.7e-09 65.9 125 40.0
SalBow1G7686 Salvia bowleyana HOM05D000423 ORTHO05D000284 4.7e-09 65.9 131 38.2
Sp6g27620 Schrenkiella parvula HOM05D000423 ORTHO05D000284 4.7e-09 65.9 126 38.9
FAN05G5271 Fragaria x ananassa HOM05D000423 ORTHO05D000284 6.2e-09 65.5 127 40.2
PSO017G1936 Papaver somniferum HOM05D000423 ORTHO05D000284 6.2e-09 65.5 124 40.3
Rhsim09G0129100 Rhododendron simsii HOM05D000423 ORTHO05D000284 6.2e-09 65.5 126 41.3
A03p07840 Brassica napus HOM05D000423 ORTHO05D000284 8.1e-09 65.1 126 39.7
Lalb_Chr19g0126691 Lupinus albus HOM05D000423 ORTHO05D000284 8.1e-09 65.1 141 36.9
Aa31LG11G13120 Aethionema arabicum HOM05D000423 ORTHO05D000284 1.1e-08 64.7 126 38.1
BcaB08g36843 Brassica carinata HOM05D000423 ORTHO05D000284 1.1e-08 64.7 126 38.9
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.1e-08 64.7 126 38.9
DCAR_029411 Daucus carota HOM05D000423 ORTHO05D000284 1.4e-08 64.3 126 34.9
Dinv02955 Davidia involucrata HOM05D000423 ORTHO05D000284 1.8e-08 63.9 126 34.9
SalBow1G7971 Salvia bowleyana HOM05D000423 ORTHO05D000284 1.8e-08 63.9 127 37.0
Medtr7g079720 Medicago truncatula HOM05D000423 ORTHO05D000284 3.1e-08 63.2 125 39.2
Ca_07969_v3 Cicer arietinum L. HOM05D000423 ORTHO05D000284 4.0e-08 62.8 128 38.3
Migut.F02142 Erythranthe guttata HOM05D000423 ORTHO05D000284 4.0e-08 62.8 126 36.5
C09p60620 Brassica napus HOM05D000423 ORTHO05D000284 5.2e-08 62.4 126 35.7
AUR62006668 Chenopodium quinoa HOM05D000423 ORTHO05D000284 5.2e-08 62.4 126 39.7
DCAR_029412 Daucus carota HOM05D000423 ORTHO05D000284 5.2e-08 62.4 126 32.5
Lsat_1_v5_gn_2_54280 Lactuca sativa HOM05D000423 ORTHO05D000284 5.2e-08 62.4 125 37.6
BcaC04g18870 Brassica carinata HOM05D000423 ORTHO05D000284 6.8e-08 62.0 126 36.5
BolC9t58895H Brassica oleracea HOM05D000423 ORTHO05D000284 6.8e-08 62.0 126 36.5
A10p22670 Brassica napus HOM05D000423 ORTHO05D000284 8.9e-08 61.6 126 37.3
BraA10t44328Z Brassica rapa HOM05D000423 ORTHO05D000284 8.9e-08 61.6 126 37.3
Cpa.g.c26337.3 Carica papaya HOM05D000423 ORTHO05D000284 8.9e-08 61.6 126 37.3
DCAR_029415 Daucus carota HOM05D000423 ORTHO05D000284 8.9e-08 61.6 126 33.3
Os08g0529000 Oryza sativa ssp. japonica HOM05D000423 ORTHO05D000284 8.9e-08 61.6 125 33.6
PSO675G6189 Papaver somniferum HOM05D000423 ORTHO05D000284 8.9e-08 61.6 124 35.5
SalBow1G6159 Salvia bowleyana HOM05D000423 ORTHO05D000284 8.9e-08 61.6 127 36.2
SalBow1G4769 Salvia bowleyana HOM05D000423 ORTHO05D000284 1.2e-07 61.2 127 34.6
BcaB01g04977 Brassica carinata HOM05D000423 ORTHO05D000284 1.5e-07 60.8 121 39.7
ECA238G1146 Erigeron canadensis HOM05D000423 ORTHO05D000284 1.5e-07 60.8 124 38.7
PSO675G7445 Papaver somniferum HOM05D000423 ORTHO05D000284 1.5e-07 60.8 124 36.3
Phvul.008G055200 Phaseolus vulgaris HOM05D000423 ORTHO05D000284 2.6e-07 60.1 128 37.5
COL.COLO4_26686 Corchorus olitorius HOM05D000423 ORTHO05D000284 3.4e-07 59.7 124 34.7
TPR.G30357 Trifolium pratense HOM05D000423 ORTHO05D000284 3.4e-07 59.7 127 36.2
Oeu012648.1 Olea europaea HOM05D000423 ORTHO05D000284 4.4e-07 59.3 128 35.9
Oeu012649.1 Olea europaea HOM05D000423 ORTHO05D000284 4.4e-07 59.3 128 35.9
Oeu062054.1 Olea europaea HOM05D000423 ORTHO05D000284 4.4e-07 59.3 126 33.3
Oeu062055.1 Olea europaea HOM05D000423 ORTHO05D000284 4.4e-07 59.3 126 33.3
HPP92_000348 Vanilla planifolia HOM05D000423 ORTHO05D000284 4.4e-07 59.3 134 32.8
CAN.G179.35 Capsicum annuum HOM05D000423 ORTHO05D000284 5.8e-07 58.9 134 32.1
Eucgr.G02549 Eucalyptus grandis HOM05D000423 ORTHO05D000284 5.8e-07 58.9 127 32.3
Nitab4.5_0002801g0020 Nicotiana tabacum HOM05D000423 ORTHO05D000284 7.6e-07 58.5 126 34.9
VMungo1383G3053 Vigna mungo HOM05D000423 ORTHO05D000284 9.9e-07 58.2 134 35.1
PSO017G5826 Papaver somniferum HOM05D000423 ORTHO05D000284 1.3e-06 57.8 124 36.3
PGSC0003DMG400017955 Solanum tuberosum HOM05D000423 ORTHO05D000284 1.3e-06 57.8 126 31.7
arahy.Tifrunner.gnm1.ann1.K2GLG1 Arachis hypogaea HOM05D000423 ORTHO05D000284 2.2e-06 57.0 132 36.4
Cc10_g14830 Coffea canephora HOM05D000423 ORTHO05D000284 2.9e-06 56.6 128 32.0
Eucgr.G02548 Eucalyptus grandis HOM05D000423 ORTHO05D000284 2.9e-06 56.6 126 29.4
Peaxi162Scf00309g00112 Petunia axillaris HOM05D000423 ORTHO05D000284 3.7e-06 56.2 129 34.1
SalBow1G6427 Salvia bowleyana HOM05D000423 ORTHO05D000284 3.7e-06 56.2 129 31.0
Cc09_g03480 Coffea canephora HOM05D000423 ORTHO05D000284 4.9e-06 55.8 124 32.3
Lsat_1_v5_gn_8_115781 Lactuca sativa HOM05D000423 ORTHO05D000284 6.4e-06 55.5 127 29.1
Solyc01g068410.4 Solanum lycopersicum HOM05D000423 ORTHO05D000284 8.4e-06 55.1 126 30.2


User provided reference genes

Program Settings