Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 4.8e-152 541.2 284 100.0
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.2e-91 340.5 251 67.3
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.1e-91 339.7 251 66.9
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 6.2e-91 338.2 249 66.3
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 4.0e-90 335.5 252 66.7
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 8.9e-90 334.3 255 66.3
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 6.4e-88 328.2 250 63.2
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 1.4e-87 327.0 247 64.8
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.9e-87 326.6 250 62.8
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 5.4e-87 325.1 249 63.9
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 1.2e-86 323.9 250 63.6
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 3.5e-86 322.4 273 59.7
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.0e-85 320.9 248 62.1
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.3e-85 320.5 259 63.7
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 3.0e-85 319.3 250 63.2
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 3.0e-85 319.3 250 64.0
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 5.0e-85 318.5 247 61.1
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 8.6e-85 317.8 251 62.2
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 8.6e-85 317.8 248 63.3
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 8.6e-85 317.8 269 61.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 1.1e-84 317.4 247 62.8
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 1.1e-84 317.4 255 62.4
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.1e-84 317.4 250 63.2
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 1.5e-84 317.0 250 61.2
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.9e-84 316.6 250 59.6
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.9e-84 316.6 280 58.9
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 2.5e-84 316.2 252 62.3
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.3e-84 315.8 261 59.8
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.3e-84 315.5 255 62.0
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 5.6e-84 315.1 251 63.7
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 9.5e-84 314.3 259 59.1
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 9.5e-84 314.3 259 59.1
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.1e-83 313.2 262 59.5
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.1e-83 313.2 250 62.4
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.8e-83 312.8 250 62.0
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 3.6e-83 312.4 253 59.3
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 4.7e-83 312.0 251 62.9
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 4.7e-83 312.0 251 62.9
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 8.1e-83 311.2 270 59.3
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 8.1e-83 311.2 226 68.1
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.1e-82 310.8 250 61.6
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 1.8e-82 310.1 255 59.2
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.8e-82 310.1 250 61.2
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.8e-82 310.1 256 59.4
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.8e-82 310.1 271 59.0
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 1.8e-82 310.1 249 61.0
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 2.3e-82 309.7 252 63.1
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 2.3e-82 309.7 259 59.5
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 4.0e-82 308.9 256 57.8
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 6.8e-82 308.1 259 57.9
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 6.8e-82 308.1 259 57.5
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 8.9e-82 307.8 256 57.4
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.2e-81 307.4 259 57.5
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.5e-81 307.0 251 62.5
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 3.4e-81 305.8 259 57.5
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 3.4e-81 305.8 251 62.5
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 4.4e-81 305.4 181 84.0
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 5.8e-81 305.1 251 62.5
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 7.5e-81 304.7 251 62.2
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 9.8e-81 304.3 251 62.2
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 2.2e-80 303.1 247 60.3
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.9e-80 302.8 250 58.0
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 4.9e-80 302.0 264 59.8
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 4.9e-80 302.0 267 58.8
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 6.4e-80 301.6 245 59.6
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.4e-79 300.4 251 61.8
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 2.4e-79 299.7 251 62.2
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 4.1e-79 298.9 249 59.0
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 5.4e-79 298.5 243 60.9
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 5.4e-79 298.5 245 58.8
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 2.1e-78 296.6 248 58.5
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.7e-78 296.2 250 58.8
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 1.7e-77 293.5 252 59.9
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.3e-77 293.1 248 60.1
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 3.9e-77 292.4 247 61.1
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 5.1e-77 292.0 264 56.8
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 6.6e-77 291.6 253 59.3
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 8.6e-77 291.2 248 60.9
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.1e-76 290.8 248 59.7
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.9e-76 290.0 250 60.4
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.2e-75 287.3 250 60.0
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.8e-75 286.2 232 61.6
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 4.7e-75 285.4 250 59.6
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 8.1e-75 284.6 248 59.3
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 3.1e-74 282.7 251 57.4
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.5e-73 280.4 248 59.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 4.4e-73 278.9 225 61.8
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 4.9e-72 275.4 247 56.3
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 1.4e-71 273.9 259 54.1
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 7.1e-71 271.6 248 58.1
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 9.2e-71 271.2 267 54.7
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 2.1e-70 270.0 262 53.1
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 2.3e-69 266.5 255 54.1
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 2.5e-68 263.1 259 52.1
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 9.6e-68 261.2 218 58.3
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.6e-62 243.8 187 64.2
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 6.6e-61 238.4 240 51.7
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 5.3e-58 228.8 237 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 8.4e-56 221.5 251 46.6
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 4.6e-54 215.7 235 45.5
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 1.3e-48 197.6 158 62.0
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 3.0e-45 186.4 269 39.8
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.9e-44 183.7 255 43.5
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 2.5e-44 183.3 252 46.0
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 7.4e-44 181.8 145 61.4
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.8e-42 177.2 146 61.6
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 1.3e-40 171.0 235 41.3
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 9.3e-39 164.9 156 54.5
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.7e-35 152.9 104 81.7
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 1.7e-24 117.5 103 52.4
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.4e-23 111.7 105 51.4
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.8e-19 100.1 120 49.2
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 2.0e-17 94.0 156 40.4
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 1.8e-10 70.9 190 23.7
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 2.4e-10 70.5 190 23.2
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 2.4e-10 70.5 111 33.3
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 4.1e-10 69.7 190 23.2
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 5.3e-10 69.3 188 26.6
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 1.2e-09 68.2 111 31.5
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 1.6e-09 67.8 108 30.6
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 1.6e-09 67.8 113 32.7
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 2.0e-09 67.4 111 31.5
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 2.0e-09 67.4 111 31.5
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 3.5e-09 66.6 108 30.6
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 3.5e-09 66.6 111 30.6
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 3.5e-09 66.6 117 29.9
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 3.5e-09 66.6 113 30.1
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 4.5e-09 66.2 111 31.5
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 4.5e-09 66.2 111 31.5
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 5.9e-09 65.9 111 31.5
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 5.9e-09 65.9 111 31.5
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 5.9e-09 65.9 111 30.6
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 5.9e-09 65.9 112 31.2
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.0e-08 65.1 111 30.6
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 1.0e-08 65.1 111 28.8
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 1.0e-08 65.1 111 31.5
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 1.0e-08 65.1 109 31.2
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.0e-08 65.1 111 29.7
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 1.3e-08 64.7 111 29.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.3e-08 64.7 113 29.2
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 1.7e-08 64.3 111 32.4
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 2.2e-08 63.9 111 28.8
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.2e-08 63.9 246 22.4
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 2.2e-08 63.9 112 30.4
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 2.2e-08 63.9 111 32.4
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.9e-08 63.5 111 28.8
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.9e-08 63.5 111 31.5
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.9e-08 63.5 111 31.5
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.5e-07 61.2 111 27.9
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 1.5e-07 61.2 111 27.9
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.5e-07 61.2 113 29.2
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 1.9e-07 60.8 108 28.7
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 4.2e-07 59.7 186 24.7
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 2.1e-06 57.4 201 24.4


User provided reference genes

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