Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.5e-161 572.8 291 100.0
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.5e-81 305.8 269 57.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 6.1e-78 295.0 268 58.6
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.8e-74 283.5 287 55.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.0e-74 281.6 271 55.4
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 8.6e-72 274.6 271 53.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.0e-69 267.7 279 52.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.8e-69 266.9 282 51.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 4.0e-69 265.8 278 50.4
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.0e-69 265.8 302 48.0
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.2e-68 264.2 276 51.1
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.5e-68 263.8 276 51.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.6e-68 263.1 277 51.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.3e-67 260.8 276 51.8
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 4.9e-67 258.8 279 51.6
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 6.3e-67 258.5 270 52.2
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.2e-66 256.1 278 48.6
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.2e-66 256.1 279 51.3
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 7.0e-66 255.0 270 51.1
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.2e-65 254.2 275 51.3
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 5.9e-65 251.9 277 49.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 5.0e-64 248.8 271 49.8
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 5.0e-64 248.8 275 48.4
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.1e-63 247.7 282 47.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.3e-63 246.1 273 51.3
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 3.3e-63 246.1 228 57.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.3e-63 245.7 275 50.2
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.6e-63 245.4 281 50.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.5e-63 244.6 275 49.5
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 4.7e-62 242.3 255 51.4
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.0e-61 241.1 276 50.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.0e-61 241.1 276 49.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.0e-61 241.1 276 49.6
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 2.3e-61 240.0 263 50.2
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 5.2e-61 238.8 275 47.3
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 8.9e-61 238.0 282 46.8
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.2e-60 237.7 286 47.9
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.0e-60 236.9 270 49.3
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.0e-60 236.9 277 50.2
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 3.4e-60 236.1 276 48.9
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.4e-60 236.1 282 50.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 3.4e-60 236.1 276 49.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.8e-60 235.3 282 50.0
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 7.5e-60 235.0 275 47.3
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 7.5e-60 235.0 299 46.5
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.3e-59 234.2 289 47.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.3e-59 234.2 282 48.2
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.7e-59 233.8 284 49.3
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.9e-59 233.0 282 48.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.9e-59 233.0 278 47.1
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.7e-59 232.6 282 48.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.9e-59 232.3 277 49.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 4.9e-59 232.3 277 49.1
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-58 231.1 280 48.2
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.4e-58 230.7 275 46.5
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.4e-58 230.7 277 48.7
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.9e-58 230.3 278 48.9
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.1e-58 229.2 283 45.2
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 7.0e-58 228.4 275 46.2
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 7.0e-58 228.4 278 45.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 9.2e-58 228.0 281 45.2
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.2e-57 227.6 288 46.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.6e-57 227.3 275 47.6
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.6e-57 227.3 268 47.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.7e-57 226.5 266 48.9
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 6.0e-57 225.3 288 45.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 6.0e-57 225.3 269 46.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.8e-57 224.9 259 48.3
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.0e-56 224.6 285 44.6
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.3e-56 224.2 282 48.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.7e-56 223.8 275 47.3
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 6.6e-56 221.9 278 48.9
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.5e-55 219.9 296 44.3
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-54 217.2 308 43.8
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.1e-54 216.9 278 45.7
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.1e-54 216.9 273 47.6
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.8e-54 216.5 231 52.8
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.8e-54 216.5 283 42.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.2e-54 215.3 273 47.3
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.4e-53 214.2 253 50.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.3e-53 213.4 277 46.2
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 5.2e-53 212.2 236 50.4
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 6.8e-53 211.8 232 51.3
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.0e-52 210.3 275 41.5
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-52 209.9 286 40.2
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.6e-52 209.9 232 50.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.4e-52 209.1 233 51.1
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 9.8e-52 208.0 281 44.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.7e-51 207.2 275 40.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.2e-51 206.8 286 39.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.9e-51 206.5 275 43.3
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.1e-49 200.3 306 37.6
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.1e-49 200.3 306 37.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.5e-49 199.5 300 38.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 4.6e-49 199.1 233 47.2
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 4.6e-49 199.1 233 47.2
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 6.0e-49 198.7 275 40.0
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 6.0e-49 198.7 276 43.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 6.0e-49 198.7 294 38.8
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.0e-48 198.0 301 37.5
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.3e-48 196.8 288 38.9
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.0e-48 196.4 194 55.7
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.9e-47 193.7 306 37.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.9e-47 193.7 274 40.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.5e-47 193.4 267 43.4
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 9.5e-47 191.4 306 36.9
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 9.5e-47 191.4 306 36.9
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.6e-46 190.7 296 36.5
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.6e-46 190.7 212 50.9
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 4.7e-46 189.1 275 40.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.8e-45 187.2 297 37.4
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.3e-45 186.8 305 37.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.9e-43 179.9 260 40.4
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 4.9e-43 179.1 243 44.4
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 8.3e-43 178.3 263 41.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.4e-42 176.8 283 41.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 7.1e-42 175.3 219 47.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-41 174.5 231 45.5
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.7e-41 173.3 227 42.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 7.8e-41 171.8 273 40.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.0e-40 171.4 231 45.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 3.0e-40 169.9 203 48.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.9e-40 169.5 284 38.4
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.1e-40 169.1 165 55.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.1e-39 167.9 269 39.4
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 4.3e-39 166.0 172 52.9
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.6e-38 162.9 252 39.3
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 8.1e-38 161.8 147 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 8.9e-37 158.3 270 35.2
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.5e-36 157.5 325 36.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.5e-36 157.5 260 38.1
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.0e-33 145.6 196 42.3
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.7e-32 144.1 165 50.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 9.6e-31 138.3 165 48.5
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.3e-29 132.5 141 46.1
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.7e-25 120.2 276 33.0
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 7.6e-20 102.1 119 43.7
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 9.9e-20 101.7 120 45.0
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.9e-16 89.7 172 37.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-12 78.2 95 43.2
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.5e-07 60.5 66 48.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.8e-06 57.0 155 28.4


User provided reference genes

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