Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb136670 Zea mays HOM05D039165 ORTHO05D012198 1.3e-58 229.6 116 100.0
Zm00001eb023630 Zea mays HOM05D039165 ORTHO05D012198 5.9e-48 194.1 116 87.1
Zm00001eb023640 Zea mays HOM05D039165 ORTHO05D441781 3.2e-38 161.8 95 87.4
Zm00001eb136660 Zea mays HOM05D000331 ORTHO05D012198 8.0e-21 104.0 54 92.6
Zm00001eb175530 Zea mays HOM05D000331 ORTHO05D012198 1.1e-17 93.6 78 64.1
Zm00001eb253990 Zea mays HOM05D000331 ORTHO05D003399 7.7e-16 87.4 72 72.2
Zm00001eb086430 Zea mays HOM05D000331 ORTHO05D012198 3.8e-15 85.1 52 78.8
Zm00001eb086420 Zea mays HOM05D000331 ORTHO05D012198 6.5e-15 84.3 73 60.3
Os02g0738900 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D003399 1.5e-14 83.2 72 68.1
Zm00001eb280130 Zea mays HOM05D000331 ORTHO05D003399 1.5e-14 83.2 72 68.1
Zm00001eb371760 Zea mays HOM05D000331 ORTHO05D003399 1.2e-13 80.1 72 65.3
THA.LOC104799784 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 3.0e-12 75.5 71 60.6
arahy.Tifrunner.gnm1.ann1.07YC75 Arachis hypogaea HOM05D000331 ORTHO05D003399 6.8e-12 74.3 73 57.5
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 6.8e-12 74.3 73 57.5
Sp2g04970 Schrenkiella parvula HOM05D000331 ORTHO05D003399 3.4e-11 72.0 53 66.0
AT1G59610 Arabidopsis thaliana HOM05D000331 ORTHO05D003399 4.4e-11 71.6 53 66.0
Carub.0002s0584 Capsella rubella HOM05D000331 ORTHO05D003399 4.4e-11 71.6 53 66.0
Thhalv10006739m.g Eutrema salsugineum HOM05D000331 ORTHO05D003399 4.4e-11 71.6 71 54.9
THA.LOC104819889 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 4.4e-11 71.6 53 64.2
Aa31LG1G4650 Aethionema arabicum HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
AL1G21020 Arabidopsis lyrata HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
BcaC05g24906 Brassica carinata HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
BcaC05g24911 Brassica carinata HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
A06p06920 Brassica napus HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
C05p08400 Brassica napus HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
BolC5t29591H Brassica oleracea HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
BraA06t23908Z Brassica rapa HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
Carub.0001s0968 Capsella rubella HOM05D000331 ORTHO05D003399 5.7e-11 71.2 53 64.2
BcaC02g10645 Brassica carinata HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
BcaC06g31789 Brassica carinata HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
A01p28710 Brassica napus HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
C01p36360 Brassica napus HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
C04p26160 Brassica napus HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
BolC1t03594H Brassica oleracea HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
BolC4t24188H Brassica oleracea HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 64.2
Sp1g08880 Schrenkiella parvula HOM05D000331 ORTHO05D003399 7.5e-11 70.9 53 62.3
AL2G17450 Arabidopsis lyrata HOM05D000331 ORTHO05D003399 9.8e-11 70.5 53 64.2
arahy.Tifrunner.gnm1.ann1.19AV4I Arachis hypogaea HOM05D000331 ORTHO05D003399 9.8e-11 70.5 53 66.0
arahy.Tifrunner.gnm1.ann1.1TT2GW Arachis hypogaea HOM05D000331 ORTHO05D003399 9.8e-11 70.5 53 66.0
CARHR010390 Cardamine hirsuta HOM05D000331 ORTHO05D003399 9.8e-11 70.5 53 64.2
CARHR283780 Cardamine hirsuta HOM05D000331 ORTHO05D003399 9.8e-11 70.5 53 64.2
AT1G10290 Arabidopsis thaliana HOM05D000331 ORTHO05D003399 1.3e-10 70.1 53 62.3
BcaB08g37343 Brassica carinata HOM05D000331 ORTHO05D003399 1.3e-10 70.1 53 62.3
Aa31LG2G10540 Aethionema arabicum HOM05D000331 ORTHO05D003399 1.7e-10 69.7 53 62.3
A03p66200 Brassica napus HOM05D000331 ORTHO05D003399 1.7e-10 69.7 53 62.3
Lalb_Chr01g0008191 Lupinus albus HOM05D000331 ORTHO05D003399 2.8e-10 68.9 53 64.2
Lalb_Chr03g0033801 Lupinus albus HOM05D000331 ORTHO05D003399 2.8e-10 68.9 53 64.2
Lalb_Chr19g0131871 Lupinus albus HOM05D000331 ORTHO05D003399 2.8e-10 68.9 53 64.2
A09p65130 Brassica napus HOM05D000331 ORTHO05D003399 4.8e-10 68.2 53 58.5
BraA09t41856Z Brassica rapa HOM05D000331 ORTHO05D003399 4.8e-10 68.2 53 58.5
Glyma.12G242300 Glycine max HOM05D000331 ORTHO05D003399 4.8e-10 68.2 53 64.2
BcaB04g20217 Brassica carinata HOM05D000331 ORTHO05D003399 6.3e-10 67.8 53 62.3
BcaC07g38538 Brassica carinata HOM05D000331 ORTHO05D003399 6.3e-10 67.8 53 60.4
C08p13560 Brassica napus HOM05D000331 ORTHO05D003399 6.3e-10 67.8 53 60.4
BolC8t48991H Brassica oleracea HOM05D000331 ORTHO05D003399 6.3e-10 67.8 53 60.4
BraA08t35319Z Brassica rapa HOM05D000331 ORTHO05D003399 6.3e-10 67.8 53 60.4
Oeu017735.1 Olea europaea HOM05D000331 ORTHO05D003399 1.1e-09 67.0 56 60.7
Psat7g226360 Pisum sativum HOM05D000331 ORTHO05D003399 1.4e-09 66.6 53 62.3
Thhalv10023247m.g Eutrema salsugineum HOM05D000331 ORTHO05D003399 1.8e-09 66.2 53 62.3
Peaxi162Scf00011g01726 Petunia axillaris HOM05D000331 ORTHO05D003399 1.8e-09 66.2 72 54.2
Dinv29625 Davidia involucrata HOM05D000331 ORTHO05D003399 2.4e-09 65.9 59 62.7
Duzib116G0816 Durio zibethinus HOM05D000331 ORTHO05D003399 2.4e-09 65.9 53 60.4
Cpa.g.sc113.8 Carica papaya HOM05D000331 ORTHO05D003399 3.1e-09 65.5 80 48.8
THA.LOC104823673 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 3.1e-09 65.5 53 62.3
TPR.G34136 Trifolium pratense HOM05D000331 ORTHO05D003399 3.1e-09 65.5 53 62.3
TAR628G0110 Trochodendron aralioides HOM05D000331 ORTHO05D003399 3.1e-09 65.5 49 65.3
Glyma.09G002100 Glycine max HOM05D000331 ORTHO05D003399 4.1e-09 65.1 54 64.8
Nitab4.5_0001057g0100 Nicotiana tabacum HOM05D000331 ORTHO05D003399 4.1e-09 65.1 57 63.2
AUR62032458 Chenopodium quinoa HOM05D000331 ORTHO05D003399 5.4e-09 64.7 83 51.8
AUR62041957 Chenopodium quinoa HOM05D000331 ORTHO05D003399 5.4e-09 64.7 83 51.8
Gohir.A08G230400 Gossypium hirsutum HOM05D000331 ORTHO05D003399 5.4e-09 64.7 53 58.5
Gohir.D08G250800 Gossypium hirsutum HOM05D000331 ORTHO05D003399 5.4e-09 64.7 53 58.5
Gorai.004G267500 Gossypium raimondii HOM05D000331 ORTHO05D003399 5.4e-09 64.7 53 58.5
DCAR_003284 Daucus carota HOM05D000331 ORTHO05D003399 7.0e-09 64.3 67 55.2
Dinv29672 Davidia involucrata HOM05D000331 ORTHO05D003399 7.0e-09 64.3 58 60.3
HPP92_017281 Vanilla planifolia HOM05D000331 ORTHO05D003399 7.0e-09 64.3 115 40.9
Ca_02691_v3 Cicer arietinum L. HOM05D000331 ORTHO05D003399 9.1e-09 63.9 56 62.5
ClCG11G008360 Citrullus lanatus HOM05D000331 ORTHO05D003399 9.1e-09 63.9 58 63.8
MELO3C008098.2 Cucumis melo HOM05D000331 ORTHO05D003399 9.1e-09 63.9 58 63.8
CsaV3_2G033270 Cucumis sativus L. HOM05D000331 ORTHO05D003399 9.1e-09 63.9 58 63.8
A08p34060 Brassica napus HOM05D000331 ORTHO05D003399 1.2e-08 63.5 54 59.3
CSS0005378 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D003399 1.2e-08 63.5 56 58.9
Haze_09996 Corylus avellana HOM05D000331 ORTHO05D003399 1.2e-08 63.5 53 58.5
Os03g0732200 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D012198 1.2e-08 63.5 51 62.7
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 1.2e-08 63.5 56 57.1
GSVIVG01023155001 Vitis vinifera HOM05D000331 ORTHO05D003399 1.2e-08 63.5 54 61.1
Sed0016992 Sechium edule HOM05D000331 ORTHO05D003399 1.6e-08 63.2 96 43.8
Medtr4g030140 Medicago truncatula HOM05D000331 ORTHO05D003399 2.0e-08 62.8 55 63.6
PGR042G0765 Punica granatum HOM05D000331 ORTHO05D003399 2.0e-08 62.8 55 61.8
Sed0002348 Sechium edule HOM05D000331 ORTHO05D003399 2.0e-08 62.8 58 62.1
Zm00001eb041920 Zea mays HOM05D000331 ORTHO05D003399 2.0e-08 62.8 48 62.5
EL10Ac6g14004 Beta vulgaris HOM05D000331 ORTHO05D003399 2.7e-08 62.4 55 61.8
CAN.G855.44 Capsicum annuum HOM05D000331 ORTHO05D003399 2.7e-08 62.4 57 59.6
MD05G1001600 Malus domestica HOM05D000331 ORTHO05D003399 2.7e-08 62.4 54 61.1
Lj3g0021427 Lotus japonicus HOM05D000331 ORTHO05D003399 3.5e-08 62.0 55 60.0
MD10G1002800 Malus domestica HOM05D000331 ORTHO05D003399 3.5e-08 62.0 54 61.1
Hund15400 Selenicereus undatus HOM05D000331 ORTHO05D003399 3.5e-08 62.0 55 61.8
Aqoxy6G00052 Aquilegia oxysepala HOM05D000331 ORTHO05D003399 4.5e-08 61.6 75 50.7
CSS0026537 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D003399 4.5e-08 61.6 57 57.9
CiPaw.04G009000 Carya illinoinensis HOM05D000331 ORTHO05D003399 4.5e-08 61.6 58 58.6
COL.COLO4_25129 Corchorus olitorius HOM05D000331 ORTHO05D003399 4.5e-08 61.6 54 59.3
Phvul.011G215900 Phaseolus vulgaris HOM05D000331 ORTHO05D003399 4.5e-08 61.6 57 57.9
Solyc01g103130.2 Solanum lycopersicum HOM05D000331 ORTHO05D003399 4.5e-08 61.6 57 57.9
Sopen01g045540 Solanum pennellii HOM05D000331 ORTHO05D003399 4.5e-08 61.6 57 57.9
TWI18G0696 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 4.5e-08 61.6 64 57.8
TAR376G0360 Trochodendron aralioides HOM05D000331 ORTHO05D003399 4.5e-08 61.6 49 65.3
Manes.18G111800 Manihot esculenta HOM05D000331 ORTHO05D003399 5.9e-08 61.2 55 60.0
PGR142G0664 Punica granatum HOM05D000331 ORTHO05D003399 5.9e-08 61.2 55 58.2
Sabra01G0173300 Salix brachista HOM05D000331 ORTHO05D003399 5.9e-08 61.2 54 61.1
Sabra03G0000600 Salix brachista HOM05D000331 ORTHO05D003399 5.9e-08 61.2 55 60.0
TAR381G0865 Trochodendron aralioides HOM05D000331 ORTHO05D003399 5.9e-08 61.2 49 65.3
Atru.chr13.2541 Acer truncatum HOM05D000331 ORTHO05D003399 7.7e-08 60.8 55 60.0
CANSAT21G1643 Cannabis sativa HOM05D000331 ORTHO05D003399 7.7e-08 60.8 77 50.6
Dinv22132 Davidia involucrata HOM05D000331 ORTHO05D003399 7.7e-08 60.8 99 42.4
ECA236G1940 Erigeron canadensis HOM05D000331 ORTHO05D003399 7.7e-08 60.8 57 57.9
Gohir.A10G003500 Gossypium hirsutum HOM05D000331 ORTHO05D003399 7.7e-08 60.8 55 56.4
Gohir.D10G003500 Gossypium hirsutum HOM05D000331 ORTHO05D003399 7.7e-08 60.8 55 56.4
Lj5A282G68 Lonicera japonica HOM05D000331 ORTHO05D003399 7.7e-08 60.8 47 63.8
Manes.02G204900 Manihot esculenta HOM05D000331 ORTHO05D003399 7.7e-08 60.8 55 60.0
TWI75G0938 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 7.7e-08 60.8 64 56.2
CsaV3_5G039590 Cucumis sativus L. HOM05D000331 ORTHO05D003399 1.0e-07 60.5 57 56.1
Migut.C01350 Erythranthe guttata HOM05D000331 ORTHO05D003399 1.0e-07 60.5 60 55.0
Nitab4.5_0001129g0030 Nicotiana tabacum HOM05D000331 ORTHO05D003399 1.0e-07 60.5 57 61.4
Os08g0425100 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D003399 1.0e-07 60.5 53 62.3
Prupe.8G004400 Prunus persica HOM05D000331 ORTHO05D003399 1.0e-07 60.5 54 59.3
Thecc.06G000800 Theobroma cacao HOM05D000331 ORTHO05D003399 1.3e-07 60.1 75 49.3
unitig_46.g17993 Utricularia gibba HOM05D000331 ORTHO05D003399 1.3e-07 60.1 62 56.5
VMungo1127G0260 Vigna mungo HOM05D000331 ORTHO05D003399 1.3e-07 60.1 56 57.1
COL.COLO4_26826 Corchorus olitorius HOM05D000331 ORTHO05D003399 1.7e-07 59.7 75 49.3
Haze_13975 Corylus avellana HOM05D000331 ORTHO05D003399 1.7e-07 59.7 56 58.9
Eucgr.I02791 Eucalyptus grandis HOM05D000331 ORTHO05D003399 1.7e-07 59.7 55 56.4
PSO210G0328 Papaver somniferum HOM05D000331 ORTHO05D003399 1.7e-07 59.7 55 58.2
PSO447G0026 Papaver somniferum HOM05D000331 ORTHO05D003399 1.7e-07 59.7 55 58.2
QL09p001435 Quercus lobata HOM05D000331 ORTHO05D003399 1.7e-07 59.7 84 47.6
Gorai.011G003900 Gossypium raimondii HOM05D000331 ORTHO05D003399 2.3e-07 59.3 55 54.5
Hma1.2p1_0052F.1_g029935 Hydrangea macrophylla HOM05D000331 ORTHO05D003399 2.3e-07 59.3 58 55.2
Lsat_1_v5_gn_7_77041 Lactuca sativa HOM05D000331 ORTHO05D003399 2.3e-07 59.3 58 55.2
Cc10_g09200 Coffea canephora HOM05D000331 ORTHO05D003399 2.9e-07 58.9 74 45.9
FvH4_2g00460 Fragaria vesca HOM05D000331 ORTHO05D003399 2.9e-07 58.9 55 56.4
Manes.07G028400 Manihot esculenta HOM05D000331 ORTHO05D003399 2.9e-07 58.9 56 57.1
Nitab4.5_0001359g0030 Nicotiana tabacum HOM05D000331 ORTHO05D003399 2.9e-07 58.9 56 55.4
Sed0017899 Sechium edule HOM05D000331 ORTHO05D003399 2.9e-07 58.9 57 56.1
GSVIVG01037193001 Vitis vinifera HOM05D000331 ORTHO05D003399 2.9e-07 58.9 56 58.9
Actinidia26189 Actinidia chinensis HOM05D000331 ORTHO05D003399 3.8e-07 58.5 57 56.1
Ciclev10018754m.g Citrus clementina HOM05D000331 ORTHO05D003399 3.8e-07 58.5 55 58.2
Lj9A281G42 Lonicera japonica HOM05D000331 ORTHO05D003399 3.8e-07 58.5 57 54.4
PSO170G2002 Papaver somniferum HOM05D000331 ORTHO05D003399 3.8e-07 58.5 50 60.0
RcHm_v2.0_Chr6g0250411 Rosa chinensis HOM05D000331 ORTHO05D003399 3.8e-07 58.5 55 56.4
Actinidia00153 Actinidia chinensis HOM05D000331 ORTHO05D003399 5.0e-07 58.2 58 55.2
CiPaw.03G013200 Carya illinoinensis HOM05D000331 ORTHO05D003399 5.0e-07 58.2 58 56.9
Ciclev10000216m.g Citrus clementina HOM05D000331 ORTHO05D003399 5.0e-07 58.2 54 51.9
Solyc11g039650.2 Solanum lycopersicum HOM05D000331 ORTHO05D003399 5.0e-07 58.2 58 53.4
Sopen11g017950 Solanum pennellii HOM05D000331 ORTHO05D003399 5.0e-07 58.2 58 53.4
TPR.G5988 Trifolium pratense HOM05D000331 ORTHO05D003399 5.0e-07 58.2 53 62.3
TWI12G0042 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 5.0e-07 58.2 64 53.1
ATR1159G078 Amborella trichopoda HOM05D000331 ORTHO05D003399 6.6e-07 57.8 49 63.3
EL10Ac9g22521 Beta vulgaris HOM05D000331 ORTHO05D012198 6.6e-07 57.8 53 60.4
DCAR_022281 Daucus carota HOM05D000331 ORTHO05D003399 6.6e-07 57.8 57 54.4
DCAR_031993 Daucus carota HOM05D000331 ORTHO05D003399 6.6e-07 57.8 56 57.1
Duzib192G0786 Durio zibethinus HOM05D000331 ORTHO05D003399 6.6e-07 57.8 55 54.5
Peaxi162Scf00688g00009 Petunia axillaris HOM05D000331 ORTHO05D003399 6.6e-07 57.8 58 53.4
QL02p103137 Quercus lobata HOM05D000331 ORTHO05D003399 6.6e-07 57.8 59 54.2
MSTRG.1580 Avicennia marina HOM05D000331 ORTHO05D003399 8.6e-07 57.4 75 52.0
CDE07G0866 Ceratophyllum demersum HOM05D000331 ORTHO05D003399 8.6e-07 57.4 51 58.8
CDE07G1913 Ceratophyllum demersum HOM05D000331 ORTHO05D003399 8.6e-07 57.4 51 58.8
HanXRQChr04g0120071 Helianthus annuus HOM05D000331 ORTHO05D003399 8.6e-07 57.4 58 55.2
SalBow6G4472 Salvia bowleyana HOM05D000331 ORTHO05D003399 8.6e-07 57.4 69 52.2
SalBow6G4750 Salvia bowleyana HOM05D000331 ORTHO05D003399 8.6e-07 57.4 69 52.2
HPP92_027269 Vanilla planifolia HOM05D000331 ORTHO05D012198 8.6e-07 57.4 47 61.7
Manes.10G110000 Manihot esculenta HOM05D000331 ORTHO05D003399 1.1e-06 57.0 57 57.9
MSTRG.25491 Avicennia marina HOM05D000331 ORTHO05D003399 1.5e-06 56.6 60 56.7
CAN.G876.1 Capsicum annuum HOM05D000331 ORTHO05D003399 1.5e-06 56.6 58 51.7
Duzib235G1370 Durio zibethinus HOM05D000331 ORTHO05D003399 1.5e-06 56.6 44 59.1
Lsat_1_v5_gn_9_121780 Lactuca sativa HOM05D000331 ORTHO05D003399 1.5e-06 56.6 58 55.2
Lj4g0009625 Lotus japonicus HOM05D000331 ORTHO05D003399 1.9e-06 56.2 110 38.2
Psat0s1492g0040 Pisum sativum HOM05D000331 ORTHO05D003399 1.9e-06 56.2 53 58.5
Glyma.07G273100 Glycine max HOM05D000331 ORTHO05D003399 2.5e-06 55.8 53 56.6
Glyma.17G001500 Glycine max HOM05D000331 ORTHO05D003399 2.5e-06 55.8 53 56.6
Phvul.003G075500 Phaseolus vulgaris HOM05D000331 ORTHO05D003399 2.5e-06 55.8 53 56.6
Rhsim11G0118400 Rhododendron simsii HOM05D000331 ORTHO05D003399 2.5e-06 55.8 58 51.7
Potri.019G068700 Populus trichocarpa HOM05D000331 ORTHO05D003399 3.3e-06 55.5 55 52.7
ECA234G4631 Erigeron canadensis HOM05D000331 ORTHO05D003399 4.2e-06 55.1 58 56.9
HanXRQChr01g0013971 Helianthus annuus HOM05D000331 ORTHO05D003399 4.2e-06 55.1 58 51.7
PSO017G5053 Papaver somniferum HOM05D000331 ORTHO05D003399 5.5e-06 54.7 51 56.9
VMungo1215G0321 Vigna mungo HOM05D000331 ORTHO05D003399 5.5e-06 54.7 95 41.1
Medtr4g134680 Medicago truncatula HOM05D000331 ORTHO05D003399 7.2e-06 54.3 53 54.7
Potri.003G001400 Populus trichocarpa HOM05D000331 ORTHO05D003399 7.2e-06 54.3 61 54.1
SalBow7G4622 Salvia bowleyana HOM05D000331 ORTHO05D003399 9.5e-06 53.9 60 50.0


User provided reference genes

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