Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 9.3e-156 553.5 283 100.0
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 3.3e-105 385.6 268 76.1
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 6.8e-58 228.4 263 48.3
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 2.6e-57 226.5 271 46.1
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 1.7e-56 223.8 277 46.6
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 6.4e-56 221.9 260 45.8
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 2.4e-55 219.9 268 43.3
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 4.1e-55 219.2 266 44.7
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 7.1e-55 218.4 268 44.8
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 2.1e-54 216.9 282 44.7
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 7.8e-54 214.9 275 44.0
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 7.8e-54 214.9 261 44.1
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 2.3e-53 213.4 260 43.8
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 1.2e-51 207.6 279 43.4
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 6.2e-51 205.3 264 45.5
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 6.2e-51 205.3 263 44.5
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 1.4e-50 204.1 260 42.3
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 3.1e-50 203.0 262 43.1
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 3.1e-50 203.0 280 42.1
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.6e-49 199.9 256 43.0
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 5.8e-49 198.7 257 43.2
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 5.8e-49 198.7 279 42.3
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 1.3e-48 197.6 257 42.8
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 2.2e-48 196.8 268 40.7
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 2.2e-48 196.8 274 40.5
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 8.4e-48 194.9 271 41.7
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 8.4e-48 194.9 256 45.3
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 1.1e-47 194.5 254 42.1
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 7.1e-47 191.8 258 43.4
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 9.3e-47 191.4 268 41.8
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 9.3e-47 191.4 259 41.3
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 1.6e-46 190.7 255 41.2
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 1.6e-46 190.7 270 42.2
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 2.7e-46 189.9 257 43.2
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 2.7e-46 189.9 263 42.6
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 1.0e-45 188.0 204 52.0
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 3.0e-45 186.4 251 42.6
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 3.9e-45 186.0 261 37.9
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 6.6e-45 185.3 252 41.3
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 6.6e-45 185.3 273 39.6
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 8.7e-45 184.9 265 41.5
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 8.7e-45 184.9 250 42.4
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 8.7e-45 184.9 263 40.7
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 1.9e-44 183.7 268 40.3
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 7.3e-44 181.8 253 40.7
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 7.3e-44 181.8 274 39.1
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 7.3e-44 181.8 225 44.9
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 9.6e-44 181.4 248 42.3
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 1.6e-43 180.6 257 40.1
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.6e-43 180.6 255 38.0
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 1.4e-42 177.6 258 41.5
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 1.4e-42 177.6 263 39.9
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 1.8e-42 177.2 268 37.3
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 1.8e-42 177.2 282 37.2
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 1.8e-42 177.2 260 37.7
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 3.1e-42 176.4 267 39.7
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 1.5e-41 174.1 270 39.6
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 2.0e-41 173.7 277 39.4
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 2.0e-41 173.7 258 37.2
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 2.6e-41 173.3 261 39.5
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 3.4e-41 172.9 253 39.5
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 3.4e-41 172.9 253 39.9
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 7.6e-41 171.8 249 40.6
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 9.9e-41 171.4 258 40.3
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 9.9e-41 171.4 255 38.8
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 1.3e-40 171.0 253 39.1
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 1.3e-40 171.0 262 37.4
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 2.9e-40 169.9 248 41.5
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 2.9e-40 169.9 204 47.5
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 3.8e-40 169.5 245 38.4
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 4.9e-40 169.1 258 39.1
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 6.4e-40 168.7 278 37.4
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.1e-39 167.9 254 41.3
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 1.9e-39 167.2 258 41.1
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 3.2e-39 166.4 260 36.2
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 3.2e-39 166.4 254 39.0
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 1.2e-38 164.5 221 44.3
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 2.1e-38 163.7 188 44.7
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 1.0e-37 161.4 256 37.1
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 1.1e-36 157.9 205 43.9
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 1.1e-36 157.9 263 38.4
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 1.9e-36 157.1 204 44.1
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 2.1e-35 153.7 272 33.1
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 3.1e-34 149.8 220 41.8
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 9.9e-33 144.8 213 39.0
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 6.4e-32 142.1 210 38.1
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.4e-31 141.0 210 38.6
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 4.2e-31 139.4 204 44.1
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 1.6e-30 137.5 203 41.9
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 7.9e-30 135.2 188 42.6
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.9e-28 130.6 237 34.6
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 5.3e-26 122.5 170 41.8
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 9.0e-26 121.7 169 39.6
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 5.5e-23 112.5 171 37.4
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 9.7e-20 101.7 135 44.4
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 5.1e-13 79.3 287 28.2
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 1.1e-07 61.6 103 33.0


User provided reference genes

Program Settings