Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb130570 Zea mays HOM05D002087 ORTHO05D002101 7.7e-43 176.8 92 100.0
Os01g0314800 Oryza sativa ssp. japonica HOM05D002087 ORTHO05D002101 1.8e-20 102.4 92 66.3
Zm00001eb130580 Zea mays HOM05D002087 ORTHO05D002101 1.6e-11 72.8 102 49.0
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 2.8e-08 62.0 76 46.1
MBI19_g43555_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 3.6e-08 61.6 87 46.0
MBI19_g46347_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 3.6e-08 61.6 87 46.0
TWI23G0703 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 3.6e-08 61.6 77 50.6
Zm00001eb285680 Zea mays HOM05D047827 ORTHO05D050120 3.6e-08 61.6 92 50.0
TWI59G1293 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.0e-07 60.1 78 44.9
Oeu048333.1 Olea europaea HOM05D002087 ORTHO05D002101 1.4e-07 59.7 40 67.5
Carub.0006s3478 Capsella rubella HOM05D002087 ORTHO05D002101 1.8e-07 59.3 74 47.3
Cpa.g.sc9.251 Carica papaya HOM05D002087 ORTHO05D002101 1.8e-07 59.3 75 45.3
Oeu010665.1 Olea europaea HOM05D002087 ORTHO05D002101 1.8e-07 59.3 54 57.4
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 1.8e-07 59.3 86 47.7
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 2.3e-07 58.9 89 47.2
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 2.3e-07 58.9 86 44.2
Hund18179 Selenicereus undatus HOM05D002087 ORTHO05D002101 2.3e-07 58.9 77 42.9
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 2.3e-07 58.9 75 48.0
Aa31LG5G2020 Aethionema arabicum HOM05D002087 ORTHO05D002101 3.0e-07 58.5 60 53.3
AUR62008681 Chenopodium quinoa HOM05D002087 ORTHO05D002101 3.0e-07 58.5 80 43.8
AUR62025562 Chenopodium quinoa HOM05D002087 ORTHO05D002101 3.0e-07 58.5 80 43.8
PGR031G1676 Punica granatum HOM05D002087 ORTHO05D002101 3.0e-07 58.5 79 48.1
TWI14G1194 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 3.0e-07 58.5 73 49.3
EL10Ac7g17530 Beta vulgaris HOM05D002087 ORTHO05D002101 4.0e-07 58.2 80 42.5
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 4.0e-07 58.2 85 45.9
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 4.0e-07 58.2 86 46.5
AL1G12210 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 5.2e-07 57.8 43 60.5
BcaB03g15762 Brassica carinata HOM05D002087 ORTHO05D002101 6.8e-07 57.4 79 45.6
Hund05435 Selenicereus undatus HOM05D002087 ORTHO05D002101 6.8e-07 57.4 80 42.5
Atru.chr5.1130 Acer truncatum HOM05D002087 ORTHO05D002101 8.9e-07 57.0 71 46.5
Os05g0362600 Oryza sativa ssp. japonica HOM05D047827 ORTHO05D050120 8.9e-07 57.0 79 46.8
AT1G02820 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 1.2e-06 56.6 66 47.0
Gohir.D10G171400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.2e-06 56.6 78 46.2
Gorai.011G191500 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.2e-06 56.6 78 46.2
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.2e-06 56.6 86 41.9
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 1.2e-06 56.6 77 49.4
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.2e-06 56.6 87 43.7
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 1.5e-06 56.2 83 45.8
CiPaw.08G094400 Carya illinoinensis HOM05D002087 ORTHO05D002101 1.5e-06 56.2 40 67.5
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 1.5e-06 56.2 58 50.0
PSO407G0418 Papaver somniferum HOM05D002087 ORTHO05D002101 1.5e-06 56.2 79 43.0
PGSC0003DMG400017936 Solanum tuberosum HOM05D002087 ORTHO05D002101 1.5e-06 56.2 41 63.4
Aa31LG1G9760 Aethionema arabicum HOM05D002087 ORTHO05D002101 2.0e-06 55.8 36 66.7
arahy.Tifrunner.gnm1.ann1.GPZ84J Arachis hypogaea HOM05D002087 ORTHO05D002101 2.0e-06 55.8 46 56.5
BcaB01g02052 Brassica carinata HOM05D002087 ORTHO05D002101 2.0e-06 55.8 53 50.9
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 2.0e-06 55.8 41 61.0
HanXRQChr15g0465591 Helianthus annuus HOM05D002087 ORTHO05D002101 2.0e-06 55.8 79 44.3
HanXRQChr15g0465601 Helianthus annuus HOM05D002087 ORTHO05D002101 2.0e-06 55.8 81 40.7
Oeu024406.1 Olea europaea HOM05D002087 ORTHO05D002101 2.0e-06 55.8 32 78.1
BcaB01g02443 Brassica carinata HOM05D002087 ORTHO05D002101 2.6e-06 55.5 74 43.2
BcaC03g16117 Brassica carinata HOM05D002087 ORTHO05D002101 2.6e-06 55.5 75 48.0
BcaC05g24591 Brassica carinata HOM05D002087 ORTHO05D002101 2.6e-06 55.5 79 44.3
A02p24640 Brassica napus HOM05D002087 ORTHO05D002101 2.6e-06 55.5 75 48.0
A10p01480 Brassica napus HOM05D002087 ORTHO05D002101 2.6e-06 55.5 79 44.3
C05p01450 Brassica napus HOM05D002087 ORTHO05D002101 2.6e-06 55.5 79 44.3
BolC5t28927H Brassica oleracea HOM05D002087 ORTHO05D002101 2.6e-06 55.5 79 44.3
Duzib133G1126 Durio zibethinus HOM05D002087 ORTHO05D002101 2.6e-06 55.5 73 43.8
Gohir.A08G076700 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.6e-06 55.5 69 49.3
Gohir.A10G165300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.6e-06 55.5 78 43.6
HPP92_025201 Vanilla planifolia HOM05D002087 ORTHO05D002101 2.6e-06 55.5 71 46.5
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 3.4e-06 55.1 80 41.2
BcaB01g02442 Brassica carinata HOM05D002087 ORTHO05D002101 3.4e-06 55.1 74 43.2
BcaC01g06764 Brassica carinata HOM05D002087 ORTHO05D002101 3.4e-06 55.1 74 43.2
CSS0043962 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 3.4e-06 55.1 82 46.3
Gohir.D08G086300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 3.4e-06 55.1 68 50.0
Manes.05G061300 Manihot esculenta HOM05D002087 ORTHO05D002101 3.4e-06 55.1 64 51.6
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 3.4e-06 55.1 50 52.0
Sopen06g003900 Solanum pennellii HOM05D002087 ORTHO05D002101 3.4e-06 55.1 77 46.8
Ah.08g213310 Amaranthus hybridus HOM05D002087 ORTHO05D002101 4.4e-06 54.7 80 41.2
AL6G50740 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 4.4e-06 54.7 74 43.2
C02p38880 Brassica napus HOM05D002087 ORTHO05D002101 4.4e-06 54.7 75 48.0
Carub.0001s0193 Capsella rubella HOM05D002087 ORTHO05D002101 4.4e-06 54.7 74 40.5
Lj1A23T85 Lonicera japonica HOM05D002087 ORTHO05D002101 4.4e-06 54.7 39 64.1
Manes.03G197100 Manihot esculenta HOM05D002087 ORTHO05D002101 4.4e-06 54.7 84 44.0
Prupe.8G263100 Prunus persica HOM05D002087 ORTHO05D002101 4.4e-06 54.7 68 44.1
Sc05g0003740 Simmondsia chinensis HOM05D002087 ORTHO05D002101 4.4e-06 54.7 79 40.5
TWI73G0336 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 4.4e-06 54.7 38 63.2
Ah.15g093120 Amaranthus hybridus HOM05D002087 ORTHO05D002101 5.7e-06 54.3 85 41.2
arahy.Tifrunner.gnm1.ann1.V9JC55 Arachis hypogaea HOM05D002087 ORTHO05D002101 5.7e-06 54.3 37 67.6
CARHR002140 Cardamine hirsuta HOM05D002087 ORTHO05D002101 5.7e-06 54.3 78 43.6
CARHR250570 Cardamine hirsuta HOM05D002087 ORTHO05D002101 5.7e-06 54.3 77 45.5
ClCG09G005640 Citrullus lanatus HOM05D002087 ORTHO05D002101 5.7e-06 54.3 40 60.0
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 5.7e-06 54.3 36 66.7
Duzib138G0723 Durio zibethinus HOM05D002087 ORTHO05D002101 5.7e-06 54.3 75 46.7
Thhalv10009185m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 5.7e-06 54.3 78 46.2
Thhalv10029091m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 5.7e-06 54.3 74 45.9
Oeu024408.1 Olea europaea HOM05D002087 ORTHO05D002101 5.7e-06 54.3 32 75.0
PSO170G6491 Papaver somniferum HOM05D002087 ORTHO05D002101 5.7e-06 54.3 81 39.5
Potri.002G203500 Populus trichocarpa HOM05D002087 ORTHO05D002101 5.7e-06 54.3 48 54.2
Sp1g01800 Schrenkiella parvula HOM05D002087 ORTHO05D002101 5.7e-06 54.3 78 44.9
Solyc06g009140.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 5.7e-06 54.3 77 45.5
THA.LOC104801278 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 5.7e-06 54.3 89 39.3
TAR365G0861 Trochodendron aralioides HOM05D002087 ORTHO05D002101 5.7e-06 54.3 42 59.5
unitig_0.g670 Utricularia gibba HOM05D002087 ORTHO05D002101 5.7e-06 54.3 74 45.9
BcaC01g06763 Brassica carinata HOM05D002087 ORTHO05D002101 7.5e-06 53.9 75 46.7
A03p31110 Brassica napus HOM05D002087 ORTHO05D002101 7.5e-06 53.9 75 46.7
BolC3t16079H Brassica oleracea HOM05D002087 ORTHO05D002101 7.5e-06 53.9 75 46.7
BraA03t12288Z Brassica rapa HOM05D002087 ORTHO05D002101 7.5e-06 53.9 75 46.7
CAN.G1989.9 Capsicum annuum HOM05D002087 ORTHO05D002101 7.5e-06 53.9 76 43.4
Ca_09179_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 7.5e-06 53.9 53 54.7
Ca_30608_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 7.5e-06 53.9 53 54.7
ClCG10G011030 Citrullus lanatus HOM05D002087 ORTHO05D002101 7.5e-06 53.9 79 46.8
TPR.G9639 Trifolium pratense HOM05D002087 ORTHO05D002101 7.5e-06 53.9 79 45.6
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 7.5e-06 53.9 83 44.6
HPP92_003118 Vanilla planifolia HOM05D001493 ORTHO05D002101 7.5e-06 53.9 96 40.6
Actinidia26754 Actinidia chinensis HOM05D002087 ORTHO05D002101 9.8e-06 53.5 49 55.1
AT4G02380 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 9.8e-06 53.5 76 46.1
arahy.Tifrunner.gnm1.ann1.03QWZ4 Arachis hypogaea HOM05D002087 ORTHO05D002101 9.8e-06 53.5 84 40.5
C03p37910 Brassica napus HOM05D002087 ORTHO05D002101 9.8e-06 53.5 79 45.6
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 9.8e-06 53.5 69 43.5
COL.COLO4_23330 Corchorus olitorius HOM05D002087 ORTHO05D002101 9.8e-06 53.5 73 43.8
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 9.8e-06 53.5 85 41.2
Prupe.1G133500 Prunus persica HOM05D002087 ORTHO05D002101 9.8e-06 53.5 84 41.7
TPR.G25812 Trifolium pratense HOM05D002087 ORTHO05D002101 9.8e-06 53.5 39 64.1
TPR.G39792 Trifolium pratense HOM05D002087 ORTHO05D002101 9.8e-06 53.5 79 45.6
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 9.8e-06 53.5 81 40.7


User provided reference genes

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