Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 4.9e-238 827.4 414 100.0
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-182 642.9 397 80.6
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.2e-175 620.2 403 76.7
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 5.2e-155 551.6 408 65.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.4e-154 548.5 417 65.9
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 5.7e-154 548.1 418 69.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.8e-145 519.2 377 66.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.3e-115 419.9 402 54.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.0e-115 419.1 398 52.8
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 6.8e-115 418.3 398 54.3
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-114 417.5 398 53.5
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.2e-114 417.5 398 55.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.5e-114 417.2 399 54.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 4.4e-114 415.6 399 54.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 7.5e-114 414.8 402 54.2
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 7.5e-114 414.8 395 53.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 9.8e-114 414.5 400 54.5
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 9.8e-114 414.5 400 54.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 9.8e-114 414.5 400 54.5
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 9.8e-114 414.5 400 54.5
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 9.8e-114 414.5 402 55.2
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.3e-113 414.1 398 54.3
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.3e-113 414.1 406 53.2
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.7e-113 413.7 400 54.5
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.2e-113 413.3 407 53.1
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.7e-113 412.5 395 52.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-112 411.0 395 52.2
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-112 410.6 403 54.3
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.4e-112 410.6 398 52.8
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.9e-112 410.2 398 53.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.4e-112 409.8 400 53.2
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 4.1e-112 409.1 400 54.0
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 5.4e-112 408.7 398 54.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.4e-112 408.7 402 54.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.4e-112 408.7 402 54.5
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 9.2e-112 407.9 407 50.6
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.2e-111 407.5 399 53.9
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.1e-111 406.8 404 53.2
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.1e-111 406.8 404 53.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.7e-111 406.4 398 52.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.5e-111 406.0 401 53.9
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 4.6e-111 405.6 400 53.0
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 6.0e-111 405.2 401 54.1
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 6.0e-111 405.2 399 52.6
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.8e-111 404.8 400 53.5
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.8e-111 404.8 399 51.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 7.8e-111 404.8 401 52.1
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 7.8e-111 404.8 399 52.6
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.0e-110 404.4 398 52.8
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.0e-110 404.4 399 53.4
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.3e-110 404.1 398 53.3
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.3e-110 404.1 398 53.0
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-110 404.1 397 51.9
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.7e-110 403.7 398 52.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.3e-110 403.3 404 52.7
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.3e-110 403.3 399 52.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.0e-110 402.9 404 52.5
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 3.9e-110 402.5 400 53.5
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 5.1e-110 402.1 399 52.6
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.6e-110 401.4 398 52.8
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 8.6e-110 401.4 389 52.7
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.1e-109 401.0 399 52.1
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.5e-109 399.8 398 52.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.5e-109 399.8 405 52.1
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 3.3e-109 399.4 403 52.9
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 4.3e-109 399.1 400 52.5
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.3e-109 399.1 399 52.4
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 5.6e-109 398.7 407 50.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 5.6e-109 398.7 401 51.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.6e-109 398.7 398 52.3
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.3e-109 398.3 406 52.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.3e-109 398.3 396 53.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.5e-109 397.9 399 52.6
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.2e-108 397.5 398 51.3
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.6e-108 397.1 399 53.1
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.1e-108 396.7 398 51.8
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.8e-108 396.4 399 52.4
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 3.6e-108 396.0 401 50.6
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 4.7e-108 395.6 402 54.2
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 8.1e-108 394.8 398 50.0
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.3e-107 393.3 398 50.5
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 2.3e-107 393.3 404 49.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.8e-107 391.7 401 51.9
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 8.9e-107 391.3 397 52.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 8.9e-107 391.3 398 50.8
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.2e-106 391.0 406 48.8
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-106 391.0 398 52.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-106 391.0 400 51.0
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.0e-106 390.2 398 51.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.6e-106 389.8 399 52.6
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.4e-106 389.4 399 51.1
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 3.4e-106 389.4 392 51.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 5.8e-106 388.7 398 50.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 7.6e-106 388.3 399 50.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.9e-106 387.9 397 52.1
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 6.4e-105 385.2 399 47.6
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.9e-104 383.6 398 51.0
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.4e-104 383.3 401 49.4
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.2e-104 382.9 400 51.2
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.1e-104 382.5 391 49.4
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 5.4e-104 382.1 391 50.4
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.1e-104 381.7 397 47.9
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.1e-104 381.7 397 47.9
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.1e-104 381.7 388 51.0
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 9.2e-104 381.3 399 48.6
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 9.2e-104 381.3 394 49.7
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 9.2e-104 381.3 384 51.0
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.2e-103 380.9 405 48.6
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.6e-103 380.6 398 51.0
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.5e-103 379.4 392 51.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.5e-103 379.4 392 51.0
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.1e-102 375.6 389 51.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 5.1e-102 375.6 398 51.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 8.6e-102 374.8 392 50.0
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.5e-101 374.0 388 49.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 4.3e-101 372.5 392 48.5
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.6e-100 370.5 392 50.3
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 3.6e-100 369.4 399 50.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 6.9e-99 365.2 395 48.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.6e-98 363.2 392 48.2
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.4e-97 358.2 381 49.3
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.4e-97 358.2 381 49.3
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 5.4e-96 355.5 392 47.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 6.0e-95 352.1 401 46.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.3e-94 350.9 401 50.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.0e-91 339.3 401 46.1
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.9e-88 330.5 407 45.2
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.2e-88 329.3 410 44.9
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.5e-85 320.1 406 45.6
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 4.8e-84 315.8 407 44.2
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.6e-82 310.1 393 42.5
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 8.4e-81 305.1 380 43.2
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 2.8e-76 290.0 385 43.9
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 5.3e-75 285.8 406 42.1
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 9.4e-56 221.9 252 47.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.0e-53 214.2 191 55.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 4.8e-52 209.5 437 35.7
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.9e-50 202.6 349 39.8
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 7.9e-47 192.2 165 56.4
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-46 191.4 219 49.3
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.2e-44 184.1 398 32.9
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.8e-44 183.7 398 33.4
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.1e-43 181.8 391 35.0
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.1e-43 181.8 398 32.2
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.4e-43 180.6 296 38.9
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.2e-36 157.5 155 51.0
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 4.8e-28 129.8 125 56.0
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.9e-26 122.9 392 28.1
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.8e-20 104.0 96 54.2
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 3.1e-19 100.5 77 61.0
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.4e-14 85.1 419 27.0
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-12 78.6 165 32.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.6e-10 71.6 41 75.6
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-06 58.9 52 53.8
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 8.9e-06 55.8 397 23.9
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 8.9e-06 55.8 392 25.0


User provided reference genes

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