Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb113750 Zea mays HOM05D025436 ORTHO05D002499 8.6e-97 357.1 191 100.0
Oeu048250.1 Olea europaea HOM05D002366 ORTHO05D002499 2.2e-15 86.7 136 40.4
Thecc.10G043700 Theobroma cacao HOM05D002366 ORTHO05D002499 2.8e-15 86.3 137 42.3
Cc02_g07950 Coffea canephora HOM05D002366 ORTHO05D002499 1.2e-13 80.9 137 40.1
Prupe.2G233700 Prunus persica HOM05D002366 ORTHO05D002499 1.6e-13 80.5 138 40.6
FAN01G2158 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.7e-13 79.7 138 41.3
Thecc.03G067200 Theobroma cacao HOM05D002366 ORTHO05D002499 2.7e-13 79.7 153 35.9
Prupe.2G233900 Prunus persica HOM05D002366 ORTHO05D002499 3.5e-13 79.3 146 38.4
Dinv15677 Davidia involucrata HOM05D002366 ORTHO05D002499 4.5e-13 79.0 144 35.4
RcHm_v2.0_Chr1g0366551 Rosa chinensis HOM05D002366 ORTHO05D002499 4.5e-13 79.0 138 41.3
MSTRG.8245 Avicennia marina HOM05D002366 ORTHO05D002499 5.9e-13 78.6 136 41.2
FvH4_7g22200 Fragaria vesca HOM05D002366 ORTHO05D002499 5.9e-13 78.6 138 40.6
FAN03G1080 Fragaria x ananassa HOM05D002366 ORTHO05D002499 5.9e-13 78.6 138 40.6
FAN06G1701 Fragaria x ananassa HOM05D002366 ORTHO05D002499 5.9e-13 78.6 138 40.6
Sabra10G0158200 Salix brachista HOM05D002366 ORTHO05D002499 7.7e-13 78.2 141 36.9
SalBow3G2180 Salvia bowleyana HOM05D002366 ORTHO05D002499 7.7e-13 78.2 135 39.3
Zm00001eb201630 Zea mays HOM05D025436 ORTHO05D002499 7.7e-13 78.2 175 40.6
Zm00001eb201640 Zea mays HOM05D025436 ORTHO05D002499 7.7e-13 78.2 175 40.6
Zm00001eb201650 Zea mays HOM05D025436 ORTHO05D002499 7.7e-13 78.2 175 40.6
Duzib114G1053 Durio zibethinus HOM05D002366 ORTHO05D002499 1.0e-12 77.8 137 38.7
SalBow6G6566 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.7e-12 77.0 135 37.8
Manes.17G090200 Manihot esculenta HOM05D002366 ORTHO05D002499 2.2e-12 76.6 155 34.2
SalBow6G6394 Salvia bowleyana HOM05D002366 ORTHO05D002499 2.9e-12 76.3 135 38.5
Haze_17057 Corylus avellana HOM05D002366 ORTHO05D002499 5.0e-12 75.5 137 35.8
Haze_18932 Corylus avellana HOM05D002366 ORTHO05D002499 1.9e-11 73.6 143 37.1
Haze_18933 Corylus avellana HOM05D002366 ORTHO05D002499 1.9e-11 73.6 147 35.4
Dinv26005 Davidia involucrata HOM05D002366 ORTHO05D002499 1.9e-11 73.6 138 38.4
Prupe.5G239200 Prunus persica HOM05D002366 ORTHO05D002499 1.9e-11 73.6 166 32.5
CARHR134410 Cardamine hirsuta HOM05D002366 ORTHO05D002499 2.5e-11 73.2 141 41.1
Glyma.18G289800 Glycine max HOM05D002366 ORTHO05D002499 2.5e-11 73.2 135 38.5
Sabra10G0158300 Salix brachista HOM05D002366 ORTHO05D002499 3.2e-11 72.8 141 36.2
Prupe.2G233800 Prunus persica HOM05D002366 ORTHO05D002499 4.2e-11 72.4 146 37.7
Dinv20495 Davidia involucrata HOM05D002366 ORTHO05D002499 9.4e-11 71.2 169 36.1
Duzib205G0226 Durio zibethinus HOM05D002366 ORTHO05D002499 9.4e-11 71.2 153 34.6
Eucgr.G02924 Eucalyptus grandis HOM05D002366 ORTHO05D002499 9.4e-11 71.2 140 34.3
Lsat_1_v5_gn_8_34180 Lactuca sativa HOM05D002366 ORTHO05D002499 9.4e-11 71.2 161 33.5
Cpa.g.sc361.1 Carica papaya HOM05D002366 ORTHO05D002499 1.2e-10 70.9 113 36.3
COL.COLO4_32729 Corchorus olitorius HOM05D002366 ORTHO05D002499 1.2e-10 70.9 153 35.3
Aa31LG5G20080 Aethionema arabicum HOM05D002366 ORTHO05D002499 1.6e-10 70.5 141 37.6
Sed0019419 Sechium edule HOM05D002366 ORTHO05D002499 1.6e-10 70.5 128 37.5
Potri.012G040100 Populus trichocarpa HOM05D002366 ORTHO05D002499 2.1e-10 70.1 121 39.7
PGSC0003DMG400035890 Solanum tuberosum HOM05D002366 ORTHO05D002499 2.7e-10 69.7 136 35.3
Migut.I00570 Erythranthe guttata HOM05D002366 ORTHO05D002499 3.6e-10 69.3 144 37.5
TWI74G0850 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 3.6e-10 69.3 115 40.0
BcaC02g07399 Brassica carinata HOM05D002366 ORTHO05D002499 4.7e-10 68.9 147 36.7
C04p67400 Brassica napus HOM05D002366 ORTHO05D002499 4.7e-10 68.9 147 36.7
PGSC0003DMG400027748 Solanum tuberosum HOM05D002366 ORTHO05D002499 4.7e-10 68.9 133 39.8
AT2G39518 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 6.1e-10 68.6 141 39.0
SalBow5G4446 Salvia bowleyana HOM05D002366 ORTHO05D002499 6.1e-10 68.6 137 34.3
VMungo0464G1622 Vigna mungo HOM05D002366 ORTHO05D002499 6.1e-10 68.6 144 34.0
Aqoxy3G04031 Aquilegia oxysepala HOM05D002366 ORTHO05D002499 8.0e-10 68.2 123 35.8
CSS0010618 Camellia sinensis var. sinensis HOM05D002366 ORTHO05D002499 8.0e-10 68.2 142 35.9
CAN.G786.13 Capsicum annuum HOM05D002366 ORTHO05D002499 8.0e-10 68.2 136 33.1
Zm00001eb113850 Zea mays HOM05D025436 ORTHO05D002499 1.0e-09 67.8 177 36.2
Actinidia28014 Actinidia chinensis HOM05D002366 ORTHO05D002499 1.4e-09 67.4 143 30.8
DCAR_010199 Daucus carota HOM05D002366 ORTHO05D002499 1.4e-09 67.4 153 31.4
Oeu019149.1 Olea europaea HOM05D002366 ORTHO05D002499 1.4e-09 67.4 151 31.8
Sopen04g005670 Solanum pennellii HOM05D002366 ORTHO05D002499 1.8e-09 67.0 133 38.3
TWI38G1308 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 1.8e-09 67.0 104 40.4
Atru.chr9.1589 Acer truncatum HOM05D002366 ORTHO05D002499 2.3e-09 66.6 178 32.0
Carub.0004s2160 Capsella rubella HOM05D002366 ORTHO05D002499 2.3e-09 66.6 139 39.6
Cc04_g09120 Coffea canephora HOM05D002366 ORTHO05D002499 2.3e-09 66.6 118 38.1
Nitab4.5_0000687g0160 Nicotiana tabacum HOM05D002366 ORTHO05D002499 2.3e-09 66.6 136 35.3
Solyc04g011490.4 Solanum lycopersicum HOM05D002366 ORTHO05D002499 2.3e-09 66.6 133 38.3
ATR0598G065 Amborella trichopoda HOM05D002366 ORTHO05D002499 3.0e-09 66.2 88 45.5
BcaB06g29095 Brassica carinata HOM05D002366 ORTHO05D002499 3.0e-09 66.2 147 37.4
DCAR_010197 Daucus carota HOM05D002366 ORTHO05D002499 3.0e-09 66.2 166 30.7
Thhalv10017310m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 3.0e-09 66.2 141 34.8
Gohir.D10G226600 Gossypium hirsutum HOM05D002366 ORTHO05D002499 3.0e-09 66.2 140 34.3
Phvul.004G145800 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 3.0e-09 66.2 142 33.8
GSVIVG01016541001 Vitis vinifera HOM05D002366 ORTHO05D002499 3.0e-09 66.2 139 33.8
DCAR_027633 Daucus carota HOM05D002366 ORTHO05D002499 4.0e-09 65.9 138 34.1
Dinv20547 Davidia involucrata HOM05D002366 ORTHO05D002499 4.0e-09 65.9 179 33.5
Gohir.D10G226300 Gossypium hirsutum HOM05D002366 ORTHO05D002499 4.0e-09 65.9 140 34.3
Sopen04g005660 Solanum pennellii HOM05D002366 ORTHO05D002499 5.2e-09 65.5 131 36.6
AL4G36940 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 6.8e-09 65.1 141 37.6
Cfa020652 Carpinus fangiana HOM05D002366 ORTHO05D002499 6.8e-09 65.1 143 32.9
Sp4g21820 Schrenkiella parvula HOM05D002366 ORTHO05D002499 6.8e-09 65.1 141 35.5
A04p30420 Brassica napus HOM05D002366 ORTHO05D002499 8.8e-09 64.7 141 36.2
BraA04t18467Z Brassica rapa HOM05D002366 ORTHO05D002499 8.8e-09 64.7 141 36.2
Ca_20288_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 8.8e-09 64.7 119 34.5
Cc02_g07930 Coffea canephora HOM05D002366 ORTHO05D002499 8.8e-09 64.7 137 37.2
Lalb_Chr10g0091701 Lupinus albus HOM05D002366 ORTHO05D002499 8.8e-09 64.7 136 35.3
Lalb_Chr17g0336171 Lupinus albus HOM05D002366 ORTHO05D002499 8.8e-09 64.7 136 34.6
Peaxi162Scf00760g00219 Petunia axillaris HOM05D002366 ORTHO05D002499 8.8e-09 64.7 136 36.0
Solyc04g011480.3 Solanum lycopersicum HOM05D002366 ORTHO05D002499 8.8e-09 64.7 132 37.1
BcaC02g12081 Brassica carinata HOM05D002366 ORTHO05D002499 1.2e-08 64.3 141 34.8
C04p08120 Brassica napus HOM05D002366 ORTHO05D002499 1.2e-08 64.3 141 34.8
BolC4t22422H Brassica oleracea HOM05D002366 ORTHO05D002499 1.2e-08 64.3 141 34.8
Dinv20493 Davidia involucrata HOM05D002366 ORTHO05D002499 1.2e-08 64.3 114 33.3
Dinv20549 Davidia involucrata HOM05D002366 ORTHO05D002499 1.2e-08 64.3 114 33.3
Gorai.011G257400 Gossypium raimondii HOM05D002366 ORTHO05D002499 1.2e-08 64.3 140 33.6
Nitab4.5_0000687g0190 Nicotiana tabacum HOM05D002366 ORTHO05D002499 1.2e-08 64.3 109 38.5
Oeu042016.1 Olea europaea HOM05D002366 ORTHO05D002499 1.2e-08 64.3 141 33.3
Phvul.008G012200 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 1.2e-08 64.3 135 34.8
MELO3C033579.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.5e-08 63.9 146 30.8
Glyma.07G107600 Glycine max HOM05D002366 ORTHO05D002499 1.5e-08 63.9 142 34.5
Gohir.D02G119100 Gossypium hirsutum HOM05D002366 ORTHO05D002499 1.5e-08 63.9 156 33.3
GSVIVG01016540001 Vitis vinifera HOM05D002366 ORTHO05D002499 1.5e-08 63.9 137 31.4
Atru.chr11.990 Acer truncatum HOM05D002366 ORTHO05D002499 2.0e-08 63.5 155 30.3
BolC4t28238H Brassica oleracea HOM05D002366 ORTHO05D002499 2.0e-08 63.5 141 35.5
MBI13_g21678_MAGBIO Magnolia biondii HOM05D002366 ORTHO05D002499 2.0e-08 63.5 120 34.2
SalBow6G2650 Salvia bowleyana HOM05D002366 ORTHO05D002499 2.0e-08 63.5 114 37.7
TWI60G0723 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 2.0e-08 63.5 163 31.9
THA.LOC104810173 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 2.6e-08 63.2 141 38.3
TWI81G0381 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 2.6e-08 63.2 122 37.7
BcaC02g07395 Brassica carinata HOM05D002366 ORTHO05D002499 3.4e-08 62.8 142 36.6
C04p67410 Brassica napus HOM05D002366 ORTHO05D002499 3.4e-08 62.8 142 37.3
BolC4t28239H Brassica oleracea HOM05D002366 ORTHO05D002499 3.4e-08 62.8 142 37.3
CANSAT56G2475 Cannabis sativa HOM05D002366 ORTHO05D002499 3.4e-08 62.8 136 35.3
Glyma.02G092500 Glycine max HOM05D002366 ORTHO05D002499 3.4e-08 62.8 135 32.6
TPR.G28607 Trifolium pratense HOM05D002366 ORTHO05D002499 3.4e-08 62.8 143 31.5
CANSAT56G4267 Cannabis sativa HOM05D002366 ORTHO05D002499 4.4e-08 62.4 136 34.6
Peaxi162Scf00171g00733 Petunia axillaris HOM05D002366 ORTHO05D002499 4.4e-08 62.4 118 34.7
PGSC0003DMG400027749 Solanum tuberosum HOM05D002366 ORTHO05D002499 4.4e-08 62.4 131 34.4
ClCG09G019900 Citrullus lanatus HOM05D002366 ORTHO05D002499 5.7e-08 62.0 130 36.9
CsaV3_5G026540 Cucumis sativus L. HOM05D002366 ORTHO05D002499 5.7e-08 62.0 136 32.4
Dinv31454 Davidia involucrata HOM05D002366 ORTHO05D002499 5.7e-08 62.0 98 38.8
Gorai.005G134800 Gossypium raimondii HOM05D002366 ORTHO05D002499 5.7e-08 62.0 156 32.7
THA.LOC104824587 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 5.7e-08 62.0 138 38.4
BcaB02g09112 Brassica carinata HOM05D002366 ORTHO05D002499 7.5e-08 61.6 141 34.0
DCAR_010198 Daucus carota HOM05D002366 ORTHO05D002499 7.5e-08 61.6 148 31.8
TPR.G15520 Trifolium pratense HOM05D002366 ORTHO05D002499 7.5e-08 61.6 136 30.9
BcaB06g29094 Brassica carinata HOM05D002366 ORTHO05D002499 9.8e-08 61.2 141 34.8
Peaxi162Scf00760g00218 Petunia axillaris HOM05D002366 ORTHO05D002499 9.8e-08 61.2 126 34.9
Ca_07285_v3 Cicer arietinum L. HOM05D002366 ORTHO05D002499 1.3e-07 60.8 135 31.1
Glyma.09G170100 Glycine max HOM05D002366 ORTHO05D002499 1.3e-07 60.8 124 33.1
TAR629G0597 Trochodendron aralioides HOM05D002366 ORTHO05D002499 1.3e-07 60.8 110 37.3
A04p30410 Brassica napus HOM05D002366 ORTHO05D002499 1.7e-07 60.5 140 36.4
MELO3C021645.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.7e-07 60.5 136 31.6
arahy.Tifrunner.gnm1.ann1.BG6DLE Arachis hypogaea HOM05D002366 ORTHO05D002499 2.2e-07 60.1 141 33.3
arahy.Tifrunner.gnm1.ann1.CW7JQJ Arachis hypogaea HOM05D002366 ORTHO05D002499 2.2e-07 60.1 141 33.3
BcaC02g07396 Brassica carinata HOM05D002366 ORTHO05D002499 2.2e-07 60.1 138 34.1
Migut.E00564 Erythranthe guttata HOM05D002366 ORTHO05D002499 2.2e-07 60.1 138 31.2
Thhalv10017305m.g Eutrema salsugineum HOM05D002366 ORTHO05D002499 2.2e-07 60.1 146 35.6
Gohir.A03G090932 Gossypium hirsutum HOM05D002366 ORTHO05D002499 2.2e-07 60.1 156 33.3
Phvul.008G012300 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 2.2e-07 60.1 138 32.6
Potri.010G204700 Populus trichocarpa HOM05D002366 ORTHO05D002499 2.2e-07 60.1 143 34.3
AL4G36950 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 2.8e-07 59.7 141 36.9
Gohir.A10G217500 Gossypium hirsutum HOM05D002366 ORTHO05D002499 2.8e-07 59.7 144 33.3
Sed0023282 Sechium edule HOM05D002366 ORTHO05D002499 2.8e-07 59.7 135 31.9
VMungo1383G2148 Vigna mungo HOM05D002366 ORTHO05D002499 2.8e-07 59.7 135 32.6
CsaV3_5G026560 Cucumis sativus L. HOM05D002366 ORTHO05D002499 3.7e-07 59.3 145 31.0
CDE07G1817 Ceratophyllum demersum HOM05D002366 ORTHO05D002499 4.8e-07 58.9 141 30.5
Nitab4.5_0025009g0010 Nicotiana tabacum HOM05D002366 ORTHO05D002499 4.8e-07 58.9 118 34.7
Peaxi162Scf00033g02314 Petunia axillaris HOM05D002366 ORTHO05D014666 4.8e-07 58.9 138 29.7
Sed0005662 Sechium edule HOM05D002366 ORTHO05D002499 4.8e-07 58.9 140 32.9
DCAR_019173 Daucus carota HOM05D002366 ORTHO05D002499 6.3e-07 58.5 103 35.9
DCAR_023535 Daucus carota HOM05D002366 ORTHO05D002499 6.3e-07 58.5 148 33.1
Glyma.18G289900 Glycine max HOM05D002366 ORTHO05D002499 6.3e-07 58.5 135 31.9
Glyma.18G290100 Glycine max HOM05D002366 ORTHO05D002499 6.3e-07 58.5 135 31.9
Solyc05g055150.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 6.3e-07 58.5 106 36.8
A05p06860 Brassica napus HOM05D002366 ORTHO05D002499 8.3e-07 58.2 141 34.8
Dinv26006 Davidia involucrata HOM05D002366 ORTHO05D002499 8.3e-07 58.2 141 31.9
BraA05t19651Z Brassica rapa HOM05D002366 ORTHO05D002499 1.1e-06 57.8 141 34.8
Medtr7g024750 Medicago truncatula HOM05D002366 ORTHO05D002499 1.1e-06 57.8 133 29.3
PGR083G2740 Punica granatum HOM05D002366 ORTHO05D002499 1.1e-06 57.8 133 30.8
Solyc06g072350.3 Solanum lycopersicum HOM05D002366 ORTHO05D002499 1.1e-06 57.8 122 36.1
ECA232G1962 Erigeron canadensis HOM05D000340 ORTHO05D000821 1.4e-06 57.4 117 34.2
Peaxi162Scf00358g00614 Petunia axillaris HOM05D002366 ORTHO05D002499 1.4e-06 57.4 135 34.1
RcHm_v2.0_Chr1g0366591 Rosa chinensis HOM05D002366 ORTHO05D002499 1.4e-06 57.4 153 35.3
SalBow3G4426 Salvia bowleyana HOM05D002366 ORTHO05D002499 1.4e-06 57.4 135 35.6
Manes.14G174100 Manihot esculenta HOM05D002366 ORTHO05D002499 1.8e-06 57.0 120 34.2
Nitab4.5_0001822g0030 Nicotiana tabacum HOM05D002366 ORTHO05D014666 1.8e-06 57.0 138 29.7
Psat1g123560 Pisum sativum HOM05D002366 ORTHO05D002499 1.8e-06 57.0 123 34.1
Cfa020651 Carpinus fangiana HOM05D002366 ORTHO05D002499 2.4e-06 56.6 163 29.4
Duzib084G1428 Durio zibethinus HOM05D002366 ORTHO05D002499 3.1e-06 56.2 122 33.6
Sed0024270 Sechium edule HOM05D002366 ORTHO05D002499 3.1e-06 56.2 111 36.0
VMungo0464G0902 Vigna mungo HOM05D002366 ORTHO05D002499 3.1e-06 56.2 138 26.8
AT2G39530 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 5.4e-06 55.5 131 37.4
CANSAT01G2159 Cannabis sativa HOM05D002366 ORTHO05D002499 5.4e-06 55.5 116 36.2
CsaV3_5G026550 Cucumis sativus L. HOM05D002366 ORTHO05D002499 5.4e-06 55.5 136 30.1
Migut.F01504 Erythranthe guttata HOM05D002366 ORTHO05D002499 5.4e-06 55.5 88 39.8
SalBow6G5537 Salvia bowleyana HOM05D002366 ORTHO05D002499 5.4e-06 55.5 136 30.9
Sopen04g005650 Solanum pennellii HOM05D002366 ORTHO05D002499 5.4e-06 55.5 150 34.7
VMungo0464G0502 Vigna mungo HOM05D002366 ORTHO05D002499 5.4e-06 55.5 135 29.6
RcHm_v2.0_Chr7g0177731 Rosa chinensis HOM05D002366 ORTHO05D002499 7.0e-06 55.1 160 33.8
Solyc04g011467.1 Solanum lycopersicum HOM05D002366 ORTHO05D002499 7.0e-06 55.1 150 34.7
TPR.G15505 Trifolium pratense HOM05D002366 ORTHO05D002499 7.0e-06 55.1 105 30.5
FvH4_7g22210 Fragaria vesca HOM05D002366 ORTHO05D002499 9.1e-06 54.7 159 33.3
FAN01G1305 Fragaria x ananassa HOM05D002366 ORTHO05D002499 9.1e-06 54.7 154 33.8
FAN06G1604 Fragaria x ananassa HOM05D002366 ORTHO05D002499 9.1e-06 54.7 159 33.3
Nitab4.5_0004454g0030 Nicotiana tabacum HOM05D002366 ORTHO05D002499 9.1e-06 54.7 122 32.0
Psat3g179160 Pisum sativum HOM05D002366 ORTHO05D002499 9.1e-06 54.7 102 30.4
Sp4g21830 Schrenkiella parvula HOM05D002366 ORTHO05D002499 9.1e-06 54.7 146 34.9
Sopen03g028790 Solanum pennellii HOM05D002366 ORTHO05D002499 9.1e-06 54.7 122 33.6


User provided reference genes

Program Settings