Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1541.2 810 100.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 774 88.6
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1195.3 810 76.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.0e-239 832.4 829 56.9
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 4.0e-236 822.0 832 54.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 4.1e-233 812.0 824 54.5
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 2.7e-232 809.3 816 54.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 7.8e-232 807.7 816 54.2
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.3e-231 806.2 814 54.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 1.2e-229 800.4 832 54.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.2e-229 800.4 830 54.3
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 1.6e-229 800.0 819 54.6
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 8.1e-229 797.7 816 54.3
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.8e-228 796.6 807 54.9
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 4.0e-228 795.4 819 54.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 2.0e-227 793.1 832 53.1
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 4.4e-227 792.0 838 53.8
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 9.9e-227 790.8 829 54.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 1.7e-226 790.0 807 54.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 2.2e-226 789.6 813 54.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 3.8e-226 788.9 825 53.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 6.4e-226 788.1 806 54.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 1.4e-225 786.9 815 53.7
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 2.4e-225 786.2 816 53.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 4.2e-225 785.4 815 53.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 4.2e-225 785.4 817 54.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 9.3e-225 784.3 821 54.0
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 1.2e-224 783.9 811 54.3
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 2.1e-224 783.1 816 53.4
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 2.1e-224 783.1 813 53.3
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.1e-224 783.1 818 53.8
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 3.5e-224 782.3 854 52.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 1.0e-223 780.8 818 53.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 1.7e-223 780.0 826 53.9
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 2.3e-223 779.6 825 53.7
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 2.3e-223 779.6 824 53.5
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.0e-223 779.2 826 53.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 3.9e-223 778.9 811 53.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 6.6e-223 778.1 820 53.2
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 6.6e-223 778.1 820 53.2
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 6.6e-223 778.1 823 53.1
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.1e-222 777.3 808 54.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 1.5e-222 776.9 817 53.2
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 1.5e-222 776.9 817 53.5
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 1.9e-222 776.5 817 53.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.9e-222 776.5 811 53.6
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 2.5e-222 776.2 812 53.1
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 3.3e-222 775.8 822 53.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 5.6e-222 775.0 820 53.5
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 9.6e-222 774.2 815 53.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 9.6e-222 774.2 826 52.5
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 2.1e-221 773.1 817 52.4
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 2.8e-221 772.7 815 53.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.2e-221 771.5 806 53.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.1e-220 770.8 813 52.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 1.8e-220 770.0 809 53.3
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 5.3e-220 768.5 827 52.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 5.3e-220 768.5 817 53.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 9.0e-220 767.7 811 53.3
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 1.2e-219 767.3 828 52.7
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 1.2e-219 767.3 824 52.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 1.5e-219 766.9 817 52.6
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 2.0e-219 766.5 811 53.9
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 2.0e-219 766.5 811 53.6
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 3.4e-219 765.8 770 54.2
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 5.8e-219 765.0 824 52.8
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 2.2e-218 763.1 817 52.5
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 2.9e-218 762.7 818 52.3
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 6.4e-218 761.5 817 52.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 3.2e-217 759.2 822 52.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 4.2e-217 758.8 814 52.9
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 1.2e-216 757.3 820 52.1
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.6e-216 756.9 813 52.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 2.1e-216 756.5 834 51.6
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.6e-216 755.4 815 51.4
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 4.6e-216 755.4 811 52.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 1.3e-215 753.8 816 53.1
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 3.0e-215 752.7 808 52.2
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 8.7e-215 751.1 816 52.8
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 1.9e-214 750.0 818 52.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 3.3e-214 749.2 820 53.2
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 5.6e-214 748.4 798 52.4
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 5.6e-214 748.4 821 51.8
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.6e-214 748.4 828 52.1
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 9.6e-214 747.7 815 52.4
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 1.6e-213 746.9 865 49.6
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.6e-213 746.9 823 52.1
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 3.6e-213 745.7 819 52.3
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 3.6e-213 745.7 814 52.5
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 6.2e-213 745.0 822 52.1
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.4e-212 743.8 822 51.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 1.8e-212 743.4 808 53.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.4e-212 743.0 823 52.4
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.1e-212 742.7 822 52.1
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 3.1e-212 742.7 819 52.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 4.0e-212 742.3 819 51.5
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 5.3e-212 741.9 803 52.6
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 5.3e-212 741.9 831 51.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 6.9e-212 741.5 857 50.4
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 6.9e-212 741.5 806 51.7
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 2.0e-211 740.0 819 52.0
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 2.6e-211 739.6 798 51.8
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 2.6e-211 739.6 796 52.3
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 3.4e-211 739.2 798 51.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 1.7e-210 736.9 796 52.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.2e-210 736.5 792 52.4
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 2.9e-210 736.1 816 51.5
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 4.9e-210 735.3 804 51.5
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 4.9e-210 735.3 804 51.5
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 8.4e-210 734.6 822 50.9
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 8.4e-210 734.6 819 51.4
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.4e-209 733.8 823 51.8
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 1.9e-209 733.4 813 51.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.4e-209 733.0 819 50.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 3.2e-209 732.6 812 51.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 1.2e-208 730.7 821 50.4
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 3.0e-207 726.1 814 52.0
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 3.9e-207 725.7 809 51.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.1e-207 725.3 831 50.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 5.1e-207 725.3 831 50.9
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 7.4e-206 721.5 737 54.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 9.6e-206 721.1 811 50.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 6.2e-205 718.4 815 50.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 6.2e-205 718.4 811 50.9
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 4.9e-202 708.8 827 49.6
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.9e-202 708.8 822 50.2
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 8.4e-194 681.4 829 49.5
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 1.4e-193 680.6 819 48.2
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.5e-190 670.6 850 48.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 4.3e-182 642.5 754 51.9
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.4e-175 620.9 714 49.4
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 7.4e-174 615.1 804 47.8
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 4.5e-171 605.9 857 45.2
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 6.5e-170 602.1 810 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.9e-169 600.5 797 45.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.0e-166 590.5 648 51.5
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-159 567.4 791 44.9
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.7e-157 560.8 693 48.1
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.8e-157 559.3 687 48.3
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.1e-156 556.2 792 44.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.4e-151 541.2 765 44.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.2e-148 528.5 810 43.3
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.5e-147 526.2 808 41.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.6e-136 491.1 577 48.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.1e-132 476.5 787 39.4
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.9e-125 453.0 696 44.3
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.5e-121 440.7 615 44.4
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.5e-118 431.4 614 43.8
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.7e-114 417.9 812 36.8
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.1e-106 389.8 556 43.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.5e-105 388.3 473 47.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.2e-101 374.4 608 39.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.4e-92 344.4 960 32.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.0e-69 269.2 267 55.4
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.5e-68 264.6 650 32.6
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.7e-67 261.2 282 53.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.3e-63 246.9 227 58.1
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.1e-60 239.2 272 51.1
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.7e-48 198.7 509 31.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.6e-43 182.2 245 45.3
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 8.6e-37 159.8 549 27.5
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.0e-34 151.0 150 50.0
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.6e-27 129.0 229 40.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 2.8e-27 128.3 234 37.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.3e-26 125.2 201 36.8
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 4.6e-14 84.3 92 52.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-07 63.2 167 29.3
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.4e-07 62.0 148 30.4


User provided reference genes

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