Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 1.3e-63 246.1 117 100.0
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 1.8e-60 235.7 116 97.4
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 9.1e-57 223.4 108 96.3
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 6.1e-53 210.7 116 89.7
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 5.2e-52 207.6 101 98.0
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 1.5e-51 206.1 101 97.0
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 2.6e-43 178.7 113 73.5
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 4.4e-43 177.9 114 73.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 4.4e-43 177.9 116 70.7
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 7.5e-43 177.2 108 76.9
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 7.5e-43 177.2 108 76.9
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.7e-42 176.0 116 70.7
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 2.2e-42 175.6 116 69.8
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.8e-42 175.3 115 73.0
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 2.8e-42 175.3 110 73.6
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 2.8e-42 175.3 110 73.6
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 3.7e-42 174.9 108 75.9
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 4.8e-42 174.5 110 75.5
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 1.1e-41 173.3 108 75.9
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 1.1e-41 173.3 108 75.9
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.4e-41 172.9 108 75.0
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.4e-41 172.9 110 70.9
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.8e-41 172.6 112 73.2
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.8e-41 172.6 112 73.2
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 2.4e-41 172.2 108 73.1
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 3.1e-41 171.8 115 71.3
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 3.1e-41 171.8 114 71.9
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 3.1e-41 171.8 114 71.1
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 3.1e-41 171.8 108 74.1
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 4.1e-41 171.4 108 75.0
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 5.4e-41 171.0 108 75.0
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 5.4e-41 171.0 108 75.0
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.4e-41 171.0 110 70.0
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 7.0e-41 170.6 110 70.9
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 7.0e-41 170.6 106 74.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.2e-40 169.9 106 73.6
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.2e-40 169.9 110 71.8
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.6e-40 169.5 108 74.1
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.6e-40 169.5 108 74.1
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.6e-40 169.5 108 70.4
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 1.6e-40 169.5 108 73.1
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.0e-40 169.1 108 72.2
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 2.0e-40 169.1 108 73.1
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 2.0e-40 169.1 110 70.0
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 2.0e-40 169.1 108 71.3
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 2.7e-40 168.7 110 69.1
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 2.7e-40 168.7 108 73.1
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 3.5e-40 168.3 108 73.1
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 3.5e-40 168.3 108 74.1
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 4.5e-40 167.9 108 74.1
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 4.5e-40 167.9 108 73.1
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 4.5e-40 167.9 114 71.9
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 4.5e-40 167.9 114 68.4
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 5.9e-40 167.5 108 73.1
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 5.9e-40 167.5 108 72.2
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 5.9e-40 167.5 110 72.7
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 7.7e-40 167.2 117 68.4
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 7.7e-40 167.2 108 71.3
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 7.7e-40 167.2 114 68.4
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 1.0e-39 166.8 108 72.2
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.3e-39 166.4 110 70.9
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.3e-39 166.4 108 69.4
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.7e-39 166.0 108 73.1
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 2.3e-39 165.6 108 70.4
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.3e-39 165.6 108 70.4
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 2.9e-39 165.2 108 71.3
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 2.9e-39 165.2 108 69.4
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 5.0e-39 164.5 108 70.4
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 5.0e-39 164.5 107 71.0
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 5.0e-39 164.5 108 72.2
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 6.6e-39 164.1 115 69.6
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 8.6e-39 163.7 108 72.2
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 8.6e-39 163.7 108 72.2
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 8.6e-39 163.7 96 83.3
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.1e-38 163.3 108 68.5
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.1e-38 163.3 115 70.4
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.1e-38 163.3 115 70.4
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.5e-38 162.9 108 70.4
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-38 162.5 118 66.1
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.9e-38 162.5 106 71.7
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 1.9e-38 162.5 108 70.4
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 2.5e-38 162.2 108 69.4
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 9.5e-38 160.2 107 67.3
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.2e-37 159.8 111 65.8
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.2e-37 159.8 113 60.2
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.2e-37 159.8 108 68.5
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 2.1e-37 159.1 114 69.3
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 2.1e-37 159.1 108 71.3
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.8e-37 158.7 111 64.9
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 2.8e-37 158.7 108 71.3
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 3.6e-37 158.3 114 69.3
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 4.7e-37 157.9 108 70.4
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 6.1e-37 157.5 114 67.5
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 6.1e-37 157.5 114 67.5
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 8.0e-37 157.1 111 65.8
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 8.0e-37 157.1 111 68.5
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.0e-36 156.8 106 69.8
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.0e-36 156.8 114 69.3
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.4e-36 156.4 114 69.3
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 1.4e-36 156.4 111 64.9
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.8e-36 156.0 113 61.1
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.8e-36 156.0 113 61.1
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 3.0e-36 155.2 111 64.0
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 5.2e-36 154.5 111 64.0
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 6.8e-36 154.1 73 100.0
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 2.0e-35 152.5 106 69.8
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.0e-35 152.5 113 56.6
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.3e-34 149.8 108 68.5
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.3e-34 149.8 113 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 8.3e-34 147.1 106 65.1
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.4e-33 146.4 114 57.9
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 5.4e-33 144.4 108 65.7
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.2e-32 143.3 113 55.8
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 1.2e-32 143.3 109 64.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.6e-32 142.9 153 51.6
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 2.7e-32 142.1 108 62.0
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 6.4e-26 120.9 106 59.4
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 6.4e-26 120.9 81 70.4
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 2.4e-25 119.0 113 51.3
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 4.6e-24 114.8 59 94.9
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 1.0e-23 113.6 72 73.6
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.9e-22 109.4 62 82.3
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 6.2e-21 104.4 69 73.9
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 3.2e-17 92.0 76 60.5
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.3e-14 80.9 114 42.1
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.7e-08 62.4 43 60.5
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 6.0e-08 61.2 26 100.0
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 6.0e-08 61.2 26 100.0
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 3.3e-06 55.5 35 65.7


User provided reference genes

Program Settings