Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 1.3e-78 296.2 143 100.0
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 3.3e-69 265.0 132 97.7
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 1.3e-68 263.1 138 92.8
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.2e-63 246.5 132 92.4
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 8.0e-55 217.2 131 80.2
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.4e-54 216.5 131 77.9
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 3.3e-53 211.8 131 77.9
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 7.5e-53 210.7 131 76.3
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 7.5e-53 210.7 131 76.3
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 9.7e-53 210.3 131 75.6
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 9.7e-53 210.3 131 77.9
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.3e-52 209.9 131 77.9
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 1.7e-52 209.5 131 77.1
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 2.8e-52 208.8 131 76.3
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 3.7e-52 208.4 131 78.6
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 4.8e-52 208.0 131 76.3
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 6.3e-52 207.6 131 74.8
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 6.3e-52 207.6 131 77.9
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.1e-51 206.8 130 76.2
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 1.1e-51 206.8 130 76.9
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.1e-51 206.8 131 75.6
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 1.1e-51 206.8 131 76.3
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.1e-51 206.8 131 74.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.1e-51 206.8 131 74.8
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.4e-51 206.5 131 75.6
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.4e-51 206.5 131 75.6
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.4e-51 206.5 131 77.9
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 1.4e-51 206.5 131 77.1
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 1.8e-51 206.1 131 74.0
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.8e-51 206.1 131 75.6
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 3.1e-51 205.3 132 75.0
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 3.1e-51 205.3 132 75.0
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 3.1e-51 205.3 132 75.0
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 3.1e-51 205.3 130 76.2
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 4.1e-51 204.9 132 75.0
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 4.1e-51 204.9 130 76.9
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 4.1e-51 204.9 131 74.0
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 7.0e-51 204.1 130 76.2
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 9.1e-51 203.8 131 76.3
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 9.1e-51 203.8 131 74.8
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 1.2e-50 203.4 131 72.5
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 1.6e-50 203.0 131 76.3
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 1.6e-50 203.0 132 73.5
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.6e-50 203.0 131 76.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 2.0e-50 202.6 131 74.0
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 2.7e-50 202.2 130 75.4
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 3.5e-50 201.8 131 75.6
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 4.5e-50 201.4 131 73.3
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 4.5e-50 201.4 131 75.6
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 5.9e-50 201.1 131 75.6
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 7.7e-50 200.7 131 72.5
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 7.7e-50 200.7 132 74.2
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 7.7e-50 200.7 130 76.9
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.0e-49 200.3 139 71.9
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 1.0e-49 200.3 131 74.8
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.0e-49 200.3 133 75.9
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.0e-49 200.3 133 75.9
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.3e-49 199.9 130 74.6
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.3e-49 199.9 133 75.2
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.7e-49 199.5 131 71.8
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.7e-49 199.5 131 74.0
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 2.2e-49 199.1 130 75.4
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 2.9e-49 198.7 130 74.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 2.9e-49 198.7 130 74.6
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 5.0e-49 198.0 130 73.1
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 5.0e-49 198.0 131 74.0
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 5.0e-49 198.0 153 66.0
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 6.5e-49 197.6 131 71.8
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 6.5e-49 197.6 132 74.2
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 6.5e-49 197.6 131 72.5
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 8.5e-49 197.2 131 74.8
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 8.5e-49 197.2 131 71.8
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 8.5e-49 197.2 131 74.0
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.1e-48 196.8 130 74.6
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 3.2e-48 195.3 131 73.3
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 4.2e-48 194.9 131 74.8
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 4.2e-48 194.9 131 74.8
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 4.2e-48 194.9 131 74.8
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 4.2e-48 194.9 131 76.3
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 5.5e-48 194.5 130 75.4
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 5.5e-48 194.5 131 72.5
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 5.5e-48 194.5 131 75.6
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 7.2e-48 194.1 131 75.6
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 9.4e-48 193.7 133 69.9
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 9.4e-48 193.7 131 74.0
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.2e-47 193.4 131 74.0
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.2e-47 193.4 131 74.8
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.6e-47 193.0 131 72.5
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.1e-47 192.6 131 75.6
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 2.7e-47 192.2 130 74.6
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 2.7e-47 192.2 131 73.3
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 3.6e-47 191.8 134 73.1
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 4.7e-47 191.4 131 74.8
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 8.0e-47 190.7 132 70.5
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 1.0e-46 190.3 132 69.7
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 1.4e-46 189.9 131 70.2
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.3e-46 189.1 132 69.7
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 3.0e-46 188.7 127 74.8
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 1.2e-45 186.8 133 66.9
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 7.5e-45 184.1 131 66.4
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 9.8e-45 183.7 132 69.7
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.6e-42 176.4 130 61.5
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 1.6e-42 176.4 174 54.0
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.0e-41 171.4 132 59.1
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 8.6e-41 170.6 130 60.8
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-40 169.9 132 59.1
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-40 169.9 132 59.1
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 2.5e-40 169.1 131 61.1
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.3e-40 168.7 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 4.2e-40 168.3 133 59.4
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 5.5e-40 167.9 129 63.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 7.5e-37 157.5 131 64.1
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 3.7e-36 155.2 73 100.0
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 5.6e-32 141.4 68 98.5
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 5.6e-32 141.4 68 98.5
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.2e-30 134.8 85 78.8
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.5e-29 133.3 221 40.3
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 1.3e-28 130.2 131 51.9
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 8.0e-23 110.9 92 59.8
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.1e-22 110.5 79 63.3
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 5.2e-22 108.2 54 96.3
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 6.8e-22 107.8 53 98.1
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 2.6e-21 105.9 91 58.2
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 2.9e-20 102.4 131 47.3
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 5.4e-19 98.2 63 77.8
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 2.7e-18 95.9 131 44.3
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 6.0e-18 94.7 46 97.8
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 2.5e-16 89.4 54 79.6
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 2.5e-16 89.4 54 79.6
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 5.2e-14 81.6 52 84.6
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 2.4e-06 56.2 38 65.8


User provided reference genes

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