Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb110130 Zea mays HOM05D002107 ORTHO05D002067 1.1e-100 370.2 209 100.0
Zm00001eb328350 Zea mays HOM05D002107 ORTHO05D002067 4.7e-72 275.0 212 78.8
Os07g0631700 Oryza sativa ssp. japonica HOM05D002107 ORTHO05D002067 9.2e-44 181.0 211 55.5
THA.LOC104805475 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 2.9e-13 79.7 116 41.4
AT5G39670 Arabidopsis thaliana HOM05D002107 ORTHO05D002067 2.5e-12 76.6 124 39.5
C04p46070 Brassica napus HOM05D002107 ORTHO05D002067 4.2e-12 75.9 129 37.2
BolC4t26192H Brassica oleracea HOM05D002107 ORTHO05D002067 4.2e-12 75.9 129 37.2
Manes.01G092300 Manihot esculenta HOM05D002107 ORTHO05D002067 7.1e-12 75.1 119 39.5
Sp7g02340 Schrenkiella parvula HOM05D002107 ORTHO05D002067 1.6e-11 73.9 129 37.2
A04p12390 Brassica napus HOM05D002107 ORTHO05D002067 2.1e-11 73.6 129 36.4
Thhalv10028351m.g Eutrema salsugineum HOM05D002107 ORTHO05D002067 2.1e-11 73.6 124 39.5
BraA04t16902Z Brassica rapa HOM05D002107 ORTHO05D002067 2.7e-11 73.2 129 36.4
PSO013G0121 Papaver somniferum HOM05D002107 ORTHO05D002067 3.5e-11 72.8 126 38.9
BcaC08g44426 Brassica carinata HOM05D002107 ORTHO05D002067 7.9e-11 71.6 111 38.7
C06p18630 Brassica napus HOM05D002107 ORTHO05D002067 7.9e-11 71.6 111 38.7
BolC6t37076H Brassica oleracea HOM05D002107 ORTHO05D002067 7.9e-11 71.6 111 38.7
PGR083G0803 Punica granatum HOM05D002107 ORTHO05D002067 7.9e-11 71.6 120 38.3
CARHR262620 Cardamine hirsuta HOM05D002107 ORTHO05D002067 1.0e-10 71.2 111 38.7
AL7G50640 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 1.3e-10 70.9 122 38.5
BcaB02g07973 Brassica carinata HOM05D002107 ORTHO05D002067 1.3e-10 70.9 111 37.8
BcaC02g08844 Brassica carinata HOM05D002107 ORTHO05D002067 1.3e-10 70.9 111 38.7
BraA07t29706Z Brassica rapa HOM05D002107 ORTHO05D002067 1.8e-10 70.5 111 38.7
CiPaw.04G016200 Carya illinoinensis HOM05D002107 ORTHO05D002067 1.8e-10 70.5 113 36.3
A04p15610 Brassica napus HOM05D002107 ORTHO05D002067 2.3e-10 70.1 111 38.7
Carub.0007s3628 Capsella rubella HOM05D002107 ORTHO05D002067 2.3e-10 70.1 124 36.3
PSO170G1488 Papaver somniferum HOM05D002107 ORTHO05D002067 2.3e-10 70.1 126 38.1
BraA04t17196Z Brassica rapa HOM05D002107 ORTHO05D002067 3.0e-10 69.7 111 38.7
TWI34G1788 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 3.9e-10 69.3 115 39.1
CSS0029813 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 5.1e-10 68.9 115 37.4
CANSAT64G0045 Cannabis sativa HOM05D002107 ORTHO05D002067 5.1e-10 68.9 158 29.7
BolC4t26580H Brassica oleracea HOM05D002107 ORTHO05D002067 6.7e-10 68.6 111 37.8
Actinidia38783 Actinidia chinensis HOM05D002107 ORTHO05D002067 8.7e-10 68.2 161 33.5
C04p49890 Brassica napus HOM05D002107 ORTHO05D002067 8.7e-10 68.2 127 38.6
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 1.1e-09 67.8 161 33.5
A07p20070 Brassica napus HOM05D002107 ORTHO05D002067 1.1e-09 67.8 111 37.8
BcaC04g23853 Brassica carinata HOM05D002107 ORTHO05D002067 1.5e-09 67.4 126 33.3
C09p04120 Brassica napus HOM05D002107 ORTHO05D002067 1.5e-09 67.4 126 33.3
BolC9t53342H Brassica oleracea HOM05D002107 ORTHO05D002067 1.5e-09 67.4 126 33.3
Sabra17G0074700 Salix brachista HOM05D002107 ORTHO05D002067 2.5e-09 66.6 124 34.7
Manes.02G047200 Manihot esculenta HOM05D002107 ORTHO05D002067 3.3e-09 66.2 79 45.6
Prupe.3G266000 Prunus persica HOM05D002107 ORTHO05D002067 3.3e-09 66.2 126 36.5
MD00G1125300 Malus domestica HOM05D002107 ORTHO05D002067 4.3e-09 65.9 124 35.5
FAN09G2398 Fragaria x ananassa HOM05D002107 ORTHO05D002067 9.7e-09 64.7 126 34.1
PSO832G2801 Papaver somniferum HOM05D002107 ORTHO05D002067 9.7e-09 64.7 126 37.3
THA.LOC104823116 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 9.7e-09 64.7 115 36.5
Atru.chr8.189 Acer truncatum HOM05D002107 ORTHO05D002067 1.6e-08 63.9 119 36.1
FvH4_6g48240 Fragaria vesca HOM05D002107 ORTHO05D002067 1.6e-08 63.9 126 34.1
FAN02G0855 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.6e-08 63.9 126 34.1
FAN05G0674 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.6e-08 63.9 126 34.1
FAN14G4105 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.6e-08 63.9 126 34.1
HPP92_016259 Vanilla planifolia HOM05D002107 ORTHO05D002067 1.6e-08 63.9 128 36.7
FAN05G5651 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.2e-08 63.5 121 34.7
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 2.2e-08 63.5 112 37.5
Sed0001880 Sechium edule HOM05D002107 ORTHO05D002067 2.2e-08 63.5 115 34.8
Dinv33764 Davidia involucrata HOM05D002107 ORTHO05D002067 2.8e-08 63.2 117 35.9
Nn4g23202 Nelumbo nucifera HOM05D002107 ORTHO05D002067 2.8e-08 63.2 120 35.0
Gohir.A12G178250 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.7e-08 62.8 86 39.5
Medtr5g025690 Medicago truncatula HOM05D002107 ORTHO05D002067 4.8e-08 62.4 115 34.8
Gorai.008G193900 Gossypium raimondii HOM05D002107 ORTHO05D002067 6.3e-08 62.0 86 38.4
QL02p082514 Quercus lobata HOM05D002107 ORTHO05D002067 6.3e-08 62.0 133 33.8
Haze_14513 Corylus avellana HOM05D002107 ORTHO05D002067 8.2e-08 61.6 116 35.3
FAN17G0930 Fragaria x ananassa HOM05D002107 ORTHO05D002067 8.2e-08 61.6 114 36.8
Gohir.D04G047800 Gossypium hirsutum HOM05D002107 ORTHO05D002067 8.2e-08 61.6 116 37.9
MBI05_g10775_MAGBIO Magnolia biondii HOM05D002107 ORTHO05D002067 8.2e-08 61.6 115 36.5
TWI32G0278 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 8.2e-08 61.6 124 33.1
A09p03890 Brassica napus HOM05D002107 ORTHO05D002067 1.1e-07 61.2 106 33.0
BraA09t36026Z Brassica rapa HOM05D002107 ORTHO05D002067 1.1e-07 61.2 106 33.0
CARHR152090 Cardamine hirsuta HOM05D002107 ORTHO05D002067 1.1e-07 61.2 121 35.5
Duzib264G1091 Durio zibethinus HOM05D002107 ORTHO05D002067 1.1e-07 61.2 126 34.9
FAN07G1656 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.1e-07 61.2 114 36.8
Cpa.g.sc14.95 Carica papaya HOM05D002107 ORTHO05D002067 1.4e-07 60.8 125 36.0
Gohir.A05G366900 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.4e-07 60.8 116 37.9
SalBow1G3475 Salvia bowleyana HOM05D002107 ORTHO05D002067 1.4e-07 60.8 103 35.9
SalBow1G4949 Salvia bowleyana HOM05D002107 ORTHO05D002067 1.4e-07 60.8 103 35.9
CSS0013301 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 1.8e-07 60.5 181 30.9
Ca_21248_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.8e-07 60.5 122 33.6
Gorai.012G053200 Gossypium raimondii HOM05D002107 ORTHO05D002067 1.8e-07 60.5 116 37.9
Aa31LG2G4190 Aethionema arabicum HOM05D002107 ORTHO05D002067 2.4e-07 60.1 131 32.8
BraA02t08625Z Brassica rapa HOM05D002107 ORTHO05D002067 2.4e-07 60.1 117 34.2
Cc07_g03480 Coffea canephora HOM05D002107 ORTHO05D002067 2.4e-07 60.1 114 36.0
FvH4_4g31200 Fragaria vesca HOM05D002107 ORTHO05D002067 2.4e-07 60.1 114 36.8
FAN12G0510 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.4e-07 60.1 114 36.8
Gohir.A09G014700 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.4e-07 60.1 121 33.9
Gohir.D12G180650 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.4e-07 60.1 86 37.2
Thecc.04G084400 Theobroma cacao HOM05D002107 ORTHO05D002067 3.1e-07 59.7 131 32.8
MSTRG.3332 Avicennia marina HOM05D002107 ORTHO05D002067 4.1e-07 59.3 123 34.1
Gorai.006G015300 Gossypium raimondii HOM05D002107 ORTHO05D002067 4.1e-07 59.3 134 30.6
HPP92_004332 Vanilla planifolia HOM05D002107 ORTHO05D002067 4.1e-07 59.3 115 33.9
Prupe.1G276100 Prunus persica HOM05D002107 ORTHO05D002067 5.3e-07 58.9 117 35.0
Sp2g17630 Schrenkiella parvula HOM05D002107 ORTHO05D002067 5.3e-07 58.9 123 33.3
Ah.02g129610 Amaranthus hybridus HOM05D002107 ORTHO05D002067 6.9e-07 58.5 128 35.2
Ca_02904_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 6.9e-07 58.5 115 33.0
MD09G1052700 Malus domestica HOM05D002107 ORTHO05D002067 9.0e-07 58.2 144 32.6
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.2e-06 57.8 118 33.9
Gorai.012G053700 Gossypium raimondii HOM05D002107 ORTHO05D002067 1.2e-06 57.8 116 37.1
Medtr7g011010 Medicago truncatula HOM05D002107 ORTHO05D002067 1.2e-06 57.8 115 34.8
PGR004G1060 Punica granatum HOM05D002107 ORTHO05D002067 1.2e-06 57.8 104 34.6
SalBow1G3065 Salvia bowleyana HOM05D002107 ORTHO05D002067 1.2e-06 57.8 88 40.9
VMungo1383G0436 Vigna mungo HOM05D002107 ORTHO05D002067 1.2e-06 57.8 91 42.9
A02p36260 Brassica napus HOM05D002107 ORTHO05D002067 1.5e-06 57.4 117 33.3
Glyma.07G229500 Glycine max HOM05D002107 ORTHO05D002067 1.5e-06 57.4 113 35.4
Gohir.D11G074300 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.5e-06 57.4 124 30.6
Actinidia35004 Actinidia chinensis HOM05D002107 ORTHO05D002067 2.0e-06 57.0 110 33.6
Gohir.D04G048200 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.0e-06 57.0 116 36.2
Gohir.D09G013301 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.0e-06 57.0 106 34.0
HanXRQChr02g0043151 Helianthus annuus HOM05D002107 ORTHO05D002067 2.0e-06 57.0 79 38.0
Gorai.007G079700 Gossypium raimondii HOM05D002107 ORTHO05D002067 2.6e-06 56.6 124 30.6
Lsat_1_v5_gn_4_109401 Lactuca sativa HOM05D002107 ORTHO05D002067 2.6e-06 56.6 83 34.9
Phvul.008G037300 Phaseolus vulgaris HOM05D002107 ORTHO05D002067 2.6e-06 56.6 85 41.2
RcHm_v2.0_Chr4g0439581 Rosa chinensis HOM05D002107 ORTHO05D002067 2.6e-06 56.6 114 36.0
Zm00001eb099610 Zea mays HOM05D002107 ORTHO05D002067 2.6e-06 56.6 103 38.8
Gohir.D04G191400 Gossypium hirsutum HOM05D002107 ORTHO05D002067 3.4e-06 56.2 125 33.6
RcHm_v2.0_Chr2g0167751 Rosa chinensis HOM05D002107 ORTHO05D002067 3.4e-06 56.2 126 34.1
Sc04g0008020 Simmondsia chinensis HOM05D002107 ORTHO05D002067 3.4e-06 56.2 84 41.7
GSVIVG01011435001 Vitis vinifera HOM05D002107 ORTHO05D002067 3.4e-06 56.2 133 33.8
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 4.5e-06 55.8 112 33.9
CiPaw.05G133300 Carya illinoinensis HOM05D002107 ORTHO05D002067 4.5e-06 55.8 111 35.1
Cc04_g16480 Coffea canephora HOM05D002107 ORTHO05D002067 4.5e-06 55.8 187 28.3
Lsat_1_v5_gn_2_87480 Lactuca sativa HOM05D002107 ORTHO05D002067 4.5e-06 55.8 112 32.1
Potri.008G087900 Populus trichocarpa HOM05D002107 ORTHO05D002067 4.5e-06 55.8 111 33.3
Potri.017G084800 Populus trichocarpa HOM05D002107 ORTHO05D002067 4.5e-06 55.8 126 32.5
TWI75G1605 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 4.5e-06 55.8 125 38.4
Lj4P111T48 Lonicera japonica HOM05D002107 ORTHO05D002067 5.9e-06 55.5 103 35.0
AL5G18860 Arabidopsis lyrata HOM05D002107 ORTHO05D002067 7.7e-06 55.1 116 34.5
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 7.7e-06 55.1 112 34.8
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 7.7e-06 55.1 112 34.8
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 7.7e-06 55.1 112 34.8
Carub.0005s0759 Capsella rubella HOM05D002107 ORTHO05D002067 7.7e-06 55.1 110 36.4
Glyma.18G260700 Glycine max HOM05D002107 ORTHO05D002067 7.7e-06 55.1 116 34.5
HanXRQChr16g0503101 Helianthus annuus HOM05D002107 ORTHO05D002067 7.7e-06 55.1 84 35.7
Psat0ss2585g0440 Pisum sativum HOM05D002107 ORTHO05D002067 1.0e-05 54.7 128 30.5
Psat3g200360 Pisum sativum HOM05D002107 ORTHO05D002067 1.0e-05 54.7 109 34.9
PGR044G2639 Punica granatum HOM05D002107 ORTHO05D002067 1.0e-05 54.7 116 36.2


User provided reference genes

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