Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 3.5e-55 218.0 108 100.0
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 5.3e-43 177.6 103 84.5
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 1.5e-34 149.4 105 65.7
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 7.6e-34 147.1 103 64.1
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.0e-33 146.7 102 65.7
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 1.7e-33 146.0 104 66.3
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 2.9e-33 145.2 102 66.7
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.8e-33 144.8 103 65.0
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 3.8e-33 144.8 103 65.0
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 3.8e-33 144.8 102 67.6
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 5.0e-33 144.4 102 67.6
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 6.5e-33 144.1 103 65.0
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 6.5e-33 144.1 102 66.7
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 6.5e-33 144.1 103 63.1
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-32 143.3 102 67.6
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 1.1e-32 143.3 102 65.7
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.4e-32 142.9 104 65.4
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 1.4e-32 142.9 103 65.0
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 1.9e-32 142.5 102 64.7
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 3.2e-32 141.7 103 63.1
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 3.2e-32 141.7 102 64.7
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 4.2e-32 141.4 102 63.7
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 4.2e-32 141.4 102 65.7
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 5.5e-32 141.0 103 62.1
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 7.2e-32 140.6 103 64.1
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 7.2e-32 140.6 105 61.9
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 9.3e-32 140.2 103 65.0
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 1.2e-31 139.8 103 63.1
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 1.6e-31 139.4 103 63.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 1.6e-31 139.4 103 63.1
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 2.1e-31 139.0 105 61.9
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 2.1e-31 139.0 103 63.1
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 2.7e-31 138.7 103 63.1
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 2.7e-31 138.7 103 63.1
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 2.7e-31 138.7 102 63.7
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 2.7e-31 138.7 102 62.7
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 3.6e-31 138.3 103 63.1
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 3.6e-31 138.3 102 63.7
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 3.6e-31 138.3 102 63.7
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 3.6e-31 138.3 105 61.0
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 4.6e-31 137.9 102 63.7
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.6e-31 137.9 102 63.7
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.6e-31 137.9 102 63.7
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.6e-31 137.9 102 63.7
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 1.4e-30 136.3 103 59.2
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 1.4e-30 136.3 103 59.2
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 1.4e-30 136.3 102 61.8
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 1.8e-30 136.0 103 61.2
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.8e-30 136.0 104 58.7
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 2.3e-30 135.6 103 58.3
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 2.3e-30 135.6 103 62.1
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 2.3e-30 135.6 103 59.2
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 2.3e-30 135.6 103 60.2
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 3.9e-30 134.8 103 61.2
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 5.1e-30 134.4 103 59.2
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 5.1e-30 134.4 103 59.2
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 6.7e-30 134.0 102 62.7
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 6.7e-30 134.0 103 59.2
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.1e-29 133.3 103 58.3
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.1e-29 133.3 103 58.3
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 1.1e-29 133.3 103 59.2
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 1.5e-29 132.9 105 60.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.9e-29 132.5 105 56.2
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 1.9e-29 132.5 102 57.8
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 2.5e-29 132.1 103 59.2
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 3.3e-29 131.7 105 56.2
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 3.3e-29 131.7 108 59.3
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 3.3e-29 131.7 103 60.2
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 5.7e-29 131.0 103 58.3
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 9.7e-29 130.2 102 54.9
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 9.7e-29 130.2 105 59.0
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 9.7e-29 130.2 103 57.3
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 1.3e-28 129.8 105 58.1
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 2.2e-28 129.0 105 55.2
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 2.2e-28 129.0 103 58.3
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 2.8e-28 128.6 105 57.1
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 4.8e-28 127.9 105 57.1
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 8.2e-28 127.1 106 54.7
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 1.1e-27 126.7 105 58.1
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 1.4e-27 126.3 104 60.6
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 1.4e-27 126.3 104 60.6
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.4e-27 126.3 106 55.7
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 1.8e-27 125.9 102 58.8
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 3.1e-27 125.2 105 57.1
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 4.1e-27 124.8 105 57.1
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 9.1e-27 123.6 105 55.2
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 4.5e-26 121.3 103 53.4
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 5.9e-26 120.9 103 54.4
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 7.7e-26 120.6 105 56.2
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 7.7e-26 120.6 105 56.2
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 7.7e-26 120.6 105 56.2
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 7.7e-26 120.6 105 56.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 7.7e-26 120.6 103 52.4
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 7.7e-26 120.6 105 54.3
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 2.2e-25 119.0 105 49.5
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.4e-24 116.3 101 53.5
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 3.2e-24 115.2 104 52.9
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 7.2e-24 114.0 111 50.5
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 4.7e-23 111.3 105 50.5
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 4.1e-19 98.2 80 53.8
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 2.0e-18 95.9 72 58.3
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 5.9e-18 94.4 100 46.0
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.2e-17 92.4 105 44.8
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.2e-15 86.7 100 40.0
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 2.7e-15 85.5 100 43.0
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 7.4e-13 77.4 60 58.3
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 3.5e-10 68.6 53 50.9
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.9e-08 62.8 49 49.0
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.2e-07 60.1 48 52.1
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 1.2e-07 60.1 49 51.0


User provided reference genes

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